Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  323  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104098771--104098817
24
2.0
24
83
8
60
31
6
2
59
1.34
104099148--104099189
10
3.9
10
85
14
57
47
11
2
38
1.53
104103643--104103710
32
2.2
30
81
5
73
41
2
13
42
1.59
104106058--104106094
15
2.4
16
82
13
51
27
0
0
72
0.84
104106058--104106110
17
3.1
17
81
10
63
30
0
0
69
0.88
104106060--104106109
25
2.0
26
84
7
68
28
0
0
72
0.86
104109582--104109669
31
2.8
31
81
6
99
43
6
10
39
1.65
104111278--104111353
15
5.1
15
69
6
64
5
27
18
48
1.69
104111269--104111353
30
2.8
30
82
7
109
4
27
18
49
1.67
104113845--104113883
19
2.1
19
85
0
51
46
0
10
43
1.37
104113950--104113996
19
2.4
19
79
17
51
46
0
0
53
1.00
104129153--104129177
5
5.0
5
100
0
50
80
20
0
0
0.72
104134736--104134787
10
5.0
10
77
13
52
78
1
11
7
1.02
104134736--104134783
21
2.2
21
82
10
53
77
2
12
8
1.08
104136930--104136983
28
2.0
27
85
7
74
59
3
1
35
1.26
104141892--104142115
111
2.0
111
95
0
403
26
12
19
41
1.86
104144650--104144701
21
2.4
21
80
3
59
44
1
0
53
1.11
104144669--104144726
16
3.7
15
81
11
64
48
0
0
51
1.00
104144669--104144713
14
3.0
14
87
9
54
46
0
0
53
1.00
104144669--104144726
30
1.9
31
85
3
82
48
0
0
51
1.00
104153209--104153245
17
2.1
18
90
5
58
64
0
0
35
0.94
104154355--104154386
7
4.7
7
96
3
57
75
0
25
0
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104156867--104156934
33
2.0
34
94
2
120
42
5
8
42
1.60
104157973--104158041
31
2.2
31
89
0
102
44
8
13
33
1.74
104164620--104164647
10
2.8
10
100
0
56
57
10
0
32
1.33
104172033--104172079
25
2.0
25
83
8
62
27
14
4
53
1.60
104172350--104172647
46
6.7
46
86
6
371
22
23
14
39
1.91
104172565--104172640
38
2.0
38
92
5
127
22
22
19
35
1.96
104204807--104204863
20
3.1
19
85
10
73
57
3
0
38
1.16
104204807--104204858
19
2.7
20
87
3
61
59
3
0
36
1.16
104204828--104204897
19
3.7
18
72
9
50
60
1
0
38
1.06
104206244--104206279
11
3.3
11
92
0
54
25
16
5
52
1.65
104207484--104207595
47
2.4
47
80
5
138
37
23
14
25
1.92
104209723--104209789
25
2.7
24
73
13
64
64
2
2
29
1.23
104211418--104211470
16
3.2
16
94
5
97
24
0
37
37
1.56
104211451--104211541
45
2.0
45
85
2
121
27
6
28
37
1.82
104211593--104211909
157
2.0
157
94
1
555
43
3
5
47
1.41
104211843--104211884
15
2.7
16
82
14
52
52
2
0
45
1.13
104211852--104211893
15
2.9
15
82
10
52
52
0
0
47
1.00
104211846--104212138
120
2.4
121
94
2
502
50
4
3
41
1.39
104211972--104212013
15
2.9
15
82
10
52
52
0
0
47
1.00
104215675--104215703
6
4.8
6
100
0
58
31
0
68
0
0.89
104216001--104216039
20
2.0
20
89
0
60
74
12
12
0
1.08
104218906--104219052
3
49.3
3
69
18
62
30
2
6
60
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104218951--104219005
26
2.0
26
83
16
67
27
3
3
65
1.26
104219425--104219495
3
23.3
3
72
13
56
32
5
1
60
1.29
104219397--104219495
24
4.2
24
72
12
80
33
7
1
58
1.32
104221008--104221036
2
14.5
2
100
0
58
51
0
0
48
1.00
104221531--104221754
109
2.1
109
100
0
448
34
17
20
27
1.95
104223875--104223904
13
2.3
13
94
0
51
76
6
0
16
0.99
104223916--104223956
7
5.6
7
91
8
64
85
0
12
2
0.70
104223916--104223956
15
2.8
14
92
7
64
85
0
12
2
0.70
104224824--104224906
21
4.4
19
67
22
50
28
2
12
56
1.48
104224824--104224964
55
2.6
55
80
5
135
28
2
14
55
1.51
104226287--104226333
19
2.5
20
75
10
53
38
2
4
55
1.31
104228953--104228996
21
2.2
20
83
4
52
43
29
0
27
1.55
104228954--104228995
14
3.0
14
89
0
57
42
28
0
28
1.56
104229017--104229049
16
2.1
16
100
0
66
39
12
18
30
1.87
104230650--104230762
51
2.2
51
82
3
138
21
34
20
23
1.97
104232780--104232838
30
2.0
30
86
6
84
40
0
38
20
1.53
104237518--104237551
15
2.3
15
90
5
52
55
0
5
38
1.24
104237529--104237562
13
2.7
13
86
4
52
55
0
5
38
1.24
104237525--104237578
25
2.2
24
80
6
65
61
0
7
31
1.24
104237790--104237831
16
2.7
15
85
10
57
61
2
7
28
1.35
104239576--104239601
2
13.0
2
100
0
52
50
0
0
50
1.00
104244737--104244777
21
2.0
21
90
0
64
19
29
21
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104252550--104252589
19
2.1
20
90
9
66
65
2
0
32
1.06
104255615--104255716
48
2.1
49
96
1
188
51
10
8
28
1.66
104256017--104256090
37
2.0
37
83
0
94
33
17
6
41
1.76
104256480--104257194
51
14.2
51
78
8
538
33
26
16
23
1.96
104256480--104257277
102
7.9
101
79
7
673
32
26
16
24
1.96
104256480--104257277
51
15.8
51
78
9
446
32
26
16
24
1.96
104257248--104257317
36
1.9
36
88
0
104
27
28
15
28
1.96
104258219--104258290
32
2.2
32
97
0
135
45
2
11
40
1.54
104260190--104260263
31
2.5
31
82
4
80
47
1
21
29
1.59
104262342--104262375
17
2.1
16
89
10
52
47
0
0
52
1.00
104262758--104262783
13
2.0
13
100
0
52
84
7
0
7
0.77
104280168--104280219
6
8.7
6
100
0
104
34
0
15
50
1.45
104285890--104285927
18
2.1
18
90
0
58
18
47
23
10
1.79
104286551--104286673
30
4.1
30
93
2
194
26
21
6
45
1.76
104286554--104286667
15
7.7
15
67
13
67
26
20
7
46
1.76
104291242--104291335
30
3.1
30
95
1
161
26
25
6
41
1.79
104291252--104291329
15
5.2
15
70
11
70
26
23
7
42
1.81
104291938--104291972
6
5.8
6
93
0
61
34
0
14
51
1.42
104297566--104297594
15
1.9
15
100
0
58
55
10
0
34
1.34
104298807--104298967
3
53.7
3
70
14
75
58
3
8
29
1.46
104300040--104300326
137
2.1
137
94
0
502
33
24
17
25
1.96
104300574--104300626
26
2.0
27
85
7
74
24
15
22
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104302111--104302270
26
6.2
26
87
0
239
36
23
6
33
1.81
104303282--104303320
20
2.0
20
94
0
69
12
0
28
58
1.34
104305726--104305764
18
2.2
18
86
9
53
15
46
25
12
1.81
104306789--104306900
51
2.2
51
93
0
188
33
18
17
29
1.95
104311452--104311490
18
2.2
18
86
9
53
15
46
25
12
1.81
104314515--104314563
17
2.8
17
81
12
55
28
8
2
61
1.36
104319279--104319318
21
1.9
21
89
0
62
10
50
30
10
1.69
104319366--104319651
18
15.9
18
70
10
84
24
44
21
9
1.82
104319385--104319476
48
1.9
48
82
4
114
26
45
20
7
1.77
104319367--104319499
66
2.0
66
84
5
171
24
46
21
7
1.77
104319451--104319562
57
2.0
57
82
3
136
22
45
22
9
1.81
104319426--104319640
74
2.9
75
85
2
272
25
44
20
9
1.82
104319633--104319664
15
2.1
15
94
0
55
18
53
18
9
1.71
104320509--104320539
15
2.1
15
94
5
55
12
9
0
77
0.99
104321529--104321574
24
1.9
24
82
8
58
65
23
6
4
1.35
104322754--104322792
18
2.2
18
90
9
62
23
5
0
71
1.05
104325593--104325648
25
2.3
25
84
9
71
69
0
10
19
1.17
104325674--104325711
15
2.5
15
80
16
51
71
0
5
23
1.07
104325951--104325995
14
2.9
16
81
15
51
64
0
6
28
1.19
104326202--104326244
19
2.5
17
82
17
61
72
0
6
20
1.08
104326355--104326389
3
11.3
3
93
6
61
65
0
2
31
1.07
104326597--104326683
3
29.0
3
74
11
54
63
3
6
26
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104326608--104326677
27
2.6
25
77
8
68
62
4
8
24
1.42
104330049--104330158
3
36.7
3
80
3
123
58
0
7
34
1.26
104334644--104334692
25
1.9
26
83
4
64
18
2
20
59
1.48
104340332--104340468
60
2.3
59
79
10
152
31
17
10
40
1.84
104340627--104340668
6
7.0
6
100
0
84
33
16
33
16
1.92
104343227--104343397
93
1.8
93
92
0
288
27
28
21
22
1.99
104343220--104343394
46
3.8
46
78
13
196
28
28
21
22
1.99
104343228--104343413
46
4.0
46
70
21
129
28
29
19
22
1.98
104348532--104348604
23
3.2
22
75
12
60
38
2
0
58
1.12
104353617--104353696
38
2.1
38
88
0
115
30
10
23
36
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343