Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  327  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105134284--105134327
19
2.4
19
85
7
56
50
0
9
40
1.34
105136751--105136793
21
2.0
21
81
0
50
23
4
55
16
1.59
105137806--105137838
18
1.9
17
88
11
50
42
12
15
30
1.83
105142766--105142816
10
5.1
10
80
17
54
68
1
7
21
1.25
105142766--105142816
20
2.5
21
81
15
63
68
1
7
21
1.25
105144710--105144824
7
16.6
7
72
20
91
72
1
0
25
1.00
105144729--105144799
5
13.0
5
80
11
70
73
2
0
23
0.97
105144729--105144824
8
10.2
9
73
20
72
72
2
0
25
0.95
105144729--105144805
28
2.8
28
100
0
154
72
2
0
24
0.97
105144725--105144847
7
17.0
7
72
18
74
73
1
1
23
1.01
105148481--105148540
29
2.1
29
100
0
120
35
25
6
33
1.82
105148564--105148623
20
3.0
19
79
16
68
66
3
8
21
1.33
105149191--105149220
13
2.2
14
94
5
53
63
0
0
36
0.95
105152640--105153161
132
4.0
131
78
5
469
27
19
18
34
1.95
105152830--105153149
133
2.4
133
78
2
331
26
20
17
35
1.95
105154686--105154730
9
4.8
10
75
25
53
20
20
13
46
1.83
105154686--105154730
19
2.4
18
96
3
81
20
20
13
46
1.83
105157285--105157331
4
12.8
4
86
13
66
78
0
21
0
0.75
105158320--105159573
44
28.5
44
83
2
1212
29
15
29
24
1.96
105162621--105163130
132
3.9
131
81
3
504
28
19
17
34
1.95
105168086--105168142
29
2.0
29
92
0
96
57
3
12
26
1.50
105170293--105170339
22
2.2
21
92
3
76
42
0
2
55
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105170303--105170352
7
7.3
7
77
8
50
50
0
2
48
1.12
105170261--105170346
29
3.0
27
72
21
77
40
0
3
55
1.17
105171425--105171465
21
2.0
21
95
0
73
31
4
4
58
1.40
105173183--105173223
19
2.2
19
100
0
82
21
9
43
24
1.83
105181560--105181621
28
2.2
28
97
0
115
27
16
16
40
1.89
105186144--105186175
15
2.1
15
100
0
64
59
12
6
21
1.55
105186192--105186254
30
2.1
30
96
0
117
60
15
0
23
1.35
105188244--105188274
4
7.8
4
100
0
62
77
0
0
22
0.77
105194986--105195016
16
1.9
16
93
0
53
48
9
6
35
1.62
105197865--105197902
11
3.3
12
82
14
53
36
0
0
63
0.95
105198019--105198076
30
1.9
30
89
0
89
56
12
6
24
1.59
105198114--105198156
22
2.0
22
85
0
59
58
9
11
20
1.61
105198121--105198161
11
3.7
11
80
0
55
56
7
14
21
1.63
105204634--105204737
33
3.2
33
92
0
163
18
30
11
39
1.86
105206539--105206592
26
2.1
26
92
0
90
33
9
16
40
1.80
105214975--105215014
19
2.0
20
85
4
55
42
10
2
45
1.51
105222776--105222837
12
5.9
10
77
18
56
64
4
3
27
1.29
105222790--105222821
3
10.7
3
93
0
55
65
0
3
31
1.08
105224219--105224380
87
1.9
87
84
2
218
25
24
20
29
1.99
105224306--105224604
131
2.3
131
80
9
324
25
23
22
29
1.99
105224309--105224560
87
2.9
90
79
8
250
25
22
21
30
1.99
105224179--105224650
218
2.2
218
95
0
847
26
22
21
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105224269--105224598
87
3.8
87
77
7
242
24
22
22
29
1.99
105224231--105224604
44
8.6
44
74
6
296
25
22
21
30
1.99
105225849--105225874
1
26.0
1
100
0
52
0
0
0
100
0.00
105237273--105237334
12
5.9
10
77
18
56
64
4
3
27
1.29
105237287--105237318
3
10.7
3
93
0
55
65
0
3
31
1.08
105239705--105239754
20
2.5
20
87
3
75
58
4
0
38
1.17
105245667--105245825
52
3.1
52
75
9
162
26
17
25
30
1.97
105267809--105267837
13
2.2
13
100
0
58
34
6
0
58
1.25
105270086--105270125
19
2.1
19
100
0
80
27
15
7
50
1.70
105276246--105276378
48
2.8
48
87
1
169
18
17
30
33
1.94
105281119--105281305
50
3.7
50
84
7
232
29
28
16
24
1.97
105282567--105282596
12
2.5
12
94
0
51
20
0
30
50
1.49
105286222--105286337
40
2.9
41
89
3
164
36
16
10
37
1.83
105287337--105287369
14
2.4
14
94
0
57
33
3
0
63
1.10
105291861--105291894
12
2.8
12
100
0
68
32
5
0
61
1.20
105293748--105293795
21
2.2
22
82
14
64
47
0
16
35
1.47
105294483--105294641
33
4.8
33
77
6
144
34
11
23
30
1.90
105294497--105294624
65
2.0
66
84
4
170
32
12
23
32
1.92
105294489--105294673
98
1.9
98
86
2
264
32
11
23
31
1.91
105294502--105294731
33
7.0
32
77
8
162
33
12
23
31
1.92
105294489--105294731
98
2.5
98
81
5
233
34
11
23
30
1.91
105294672--105294753
33
2.5
33
80
7
87
36
12
23
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105297228--105297305
6
13.0
6
84
0
66
2
44
1
51
1.23
105297237--105297301
9
7.2
9
72
6
51
3
41
1
53
1.25
105297231--105297301
21
3.4
21
84
0
88
2
43
1
52
1.24
105297228--105297304
15
5.3
15
73
9
61
2
45
1
50
1.23
105297234--105297304
27
2.6
27
86
4
99
2
43
1
52
1.24
105297383--105297504
6
20.3
6
87
0
145
1
44
2
51
1.24
105297505--105297541
3
12.3
3
100
0
74
32
0
0
67
0.91
105298450--105298487
16
2.4
16
86
8
51
47
5
0
47
1.24
105299621--105299693
31
2.4
30
77
4
83
34
13
12
39
1.82
105304175--105304268
48
1.9
49
85
8
129
36
24
12
26
1.91
105305847--105305902
28
2.0
28
89
0
85
42
12
14
30
1.82
105310521--105310576
3
18.7
3
100
0
112
33
0
0
66
0.92
105311621--105311663
18
2.4
18
84
0
50
46
20
2
30
1.63
105312415--105312466
3
17.0
3
76
11
52
34
3
1
59
1.27
105312415--105312454
16
2.6
15
88
4
53
32
5
2
60
1.32
105312601--105312656
23
2.3
26
85
14
75
35
10
0
53
1.36
105314052--105314118
31
2.2
31
97
2
127
35
17
17
28
1.93
105317200--105317249
19
2.6
19
90
6
75
68
24
2
6
1.23
105317154--105317228
24
3.1
24
86
0
114
74
17
2
5
1.12
105319656--105319825
25
7.0
24
82
9
193
27
22
20
29
1.98
105319655--105319824
50
3.5
49
88
5
229
27
22
20
29
1.98
105319871--105319941
20
3.5
20
90
0
115
30
21
12
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105319978--105320025
25
1.9
25
86
0
69
25
16
25
33
1.96
105321185--105321257
27
2.7
27
81
10
71
21
20
23
34
1.97
105321302--105321489
27
6.9
27
76
6
121
33
10
17
39
1.83
105321299--105321501
110
1.9
108
80
8
241
33
10
18
37
1.85
105321483--105321692
27
7.8
27
86
2
253
38
7
25
29
1.82
105321698--105321787
27
3.3
27
84
3
110
31
11
16
41
1.83
105323847--105323882
12
3.0
12
95
0
63
27
25
5
41
1.77
105329361--105329394
14
2.4
15
90
9
54
70
2
0
26
1.01
105329390--105329491
30
3.4
31
83
5
122
29
22
3
44
1.71
105329880--105329916
14
2.6
14
100
0
74
67
0
32
0
0.91
105330031--105330069
14
2.8
13
85
14
51
84
12
2
0
0.72
105330044--105330085
20
2.1
20
86
0
57
78
14
7
0
0.95
105330218--105330268
20
2.5
20
78
12
59
80
0
19
0
0.71
105330218--105330272
19
2.9
19
81
7
67
80
0
20
0
0.72
105330218--105330268
9
5.1
9
82
17
57
80
0
19
0
0.71
105330220--105330272
11
4.9
11
79
2
54
81
0
18
0
0.70
105330412--105330449
16
2.3
17
86
4
51
23
0
2
73
0.95
105330602--105331119
17
29.8
18
69
14
220
33
11
11
43
1.77
105330590--105330757
36
4.8
34
72
14
108
30
14
8
45
1.76
105330590--105330668
16
4.6
16
76
10
68
30
16
8
44
1.78
105330625--105330680
18
3.3
16
76
16
51
26
14
8
50
1.72
105330623--105330971
36
9.8
35
70
16
132
33
12
11
42
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105330625--105330972
35
9.8
34
70
14
161
33
12
10
43
1.78
105331137--105331174
16
2.3
17
81
4
51
36
15
10
36
1.82
105331098--105331176
19
4.3
19
70
16
58
40
12
7
39
1.72
105331666--105331747
40
2.0
40
100
0
164
39
12
12
36
1.80
105336878--105337507
74
7.8
83
70
16
342
27
17
21
34
1.96
105337033--105337432
73
5.3
73
71
14
283
26
18
21
33
1.96
105336966--105337393
235
1.8
230
81
8
535
27
17
21
32
1.97
105337621--105337658
20
1.9
20
88
0
58
31
18
23
26
1.97
105338841--105338865
6
4.2
6
100
0
50
0
48
52
0
1.00
105451669--105451726
26
2.2
26
96
0
107
34
3
24
37
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343