Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  337  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107902520--107902572
17
2.8
19
86
13
83
62
32
0
5
1.19
107905120--107905155
12
3.0
12
95
0
63
27
25
5
41
1.77
107913724--107914254
140
3.8
140
97
0
999
25
16
21
36
1.94
107914358--107914393
14
2.7
13
86
4
54
30
13
5
50
1.65
107914137--107914503
168
2.2
164
82
7
436
28
16
19
35
1.93
107914487--107914548
30
2.1
30
87
6
90
20
9
27
41
1.84
107915686--107915728
12
3.4
12
75
12
50
2
11
4
81
0.93
107915956--107916014
20
3.0
20
69
14
52
44
10
0
45
1.37
107923294--107923336
15
2.8
17
86
13
58
41
0
0
58
0.98
107924442--107924540
50
2.0
50
100
0
198
38
15
6
40
1.72
107934817--107934849
11
2.9
12
86
13
52
33
0
0
66
0.92
107941705--107941744
18
2.2
18
86
0
53
27
2
0
70
1.01
107943591--107943622
2
16.0
2
100
0
64
50
0
0
50
1.00
107947761--107947788
14
2.0
14
100
0
56
50
0
0
50
1.00
107952119--107952179
16
3.9
16
82
6
63
50
21
1
26
1.58
107953487--107953564
30
2.5
31
81
6
88
32
7
11
48
1.68
107953832--107953884
22
2.3
23
93
6
90
33
5
7
52
1.53
107956601--107956645
14
3.5
14
71
22
53
11
4
13
71
1.29
107956601--107956651
24
2.1
24
100
0
102
13
3
11
70
1.29
107956680--107956736
28
2.2
25
84
9
69
42
0
3
54
1.17
107956735--107956781
21
2.2
21
88
7
69
34
2
2
61
1.20
107956712--107956803
34
2.9
30
81
13
112
35
2
2
59
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107956757--107956813
14
3.9
14
78
13
69
36
1
0
61
1.07
107956710--107956812
31
3.2
32
85
12
129
36
1
1
59
1.20
107956777--107956840
21
3.0
21
86
6
76
42
1
0
56
1.09
107956860--107956909
22
2.3
22
89
0
82
34
0
6
60
1.21
107956897--107956960
31
2.1
30
80
11
69
39
0
1
59
1.07
107957092--107957116
13
1.9
13
100
0
50
56
0
0
44
0.99
107957203--107957251
20
2.3
20
89
6
71
59
0
0
40
0.98
107957189--107957256
22
3.1
22
83
10
86
54
0
1
44
1.09
107957203--107957264
21
3.0
21
84
11
74
56
1
1
40
1.19
107957244--107957325
23
3.4
24
74
17
80
53
4
1
40
1.30
107957255--107957325
23
3.0
23
77
18
83
53
5
0
40
1.24
107962964--107963102
42
3.3
42
85
5
183
38
23
12
25
1.90
107964064--107964112
5
9.8
5
100
0
98
59
0
0
40
0.98
107966600--107966629
14
2.1
14
93
0
51
50
13
10
26
1.73
107974197--107974244
24
2.0
24
84
11
64
45
0
8
45
1.33
107975826--107975916
45
2.0
45
100
0
182
38
6
13
41
1.70
107977290--107977320
16
1.9
16
93
0
53
58
19
9
12
1.62
107978511--107978540
9
3.3
9
100
0
60
60
0
0
40
0.97
107980594--107980634
20
2.0
20
100
0
82
24
24
12
39
1.89
107984279--107984312
16
2.1
16
100
0
68
41
17
11
29
1.85
107985684--107985712
14
2.1
14
100
0
58
27
0
34
37
1.57
107986584--107986613
3
10.0
3
100
0
60
66
0
33
0
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107991396--107991437
21
1.9
23
85
9
61
45
2
2
50
1.27
108012401--108012444
20
2.2
20
88
8
63
22
9
13
54
1.67
108021527--108021554
10
2.8
10
100
0
56
0
42
39
17
1.50
108022795--108023228
46
10.0
46
82
12
522
23
23
15
37
1.93
108022974--108023217
38
6.0
38
80
14
290
24
24
16
34
1.95
108022928--108023229
84
3.6
84
94
0
532
24
23
16
35
1.95
108022839--108023229
168
2.3
171
91
4
619
23
24
15
36
1.94
108027989--108028044
16
3.4
16
76
16
53
28
0
3
67
1.07
108037197--108037427
118
2.0
118
92
0
381
28
30
18
22
1.98
108038105--108038203
42
2.4
42
87
0
135
26
12
33
28
1.92
108038254--108038318
6
10.5
6
84
15
64
80
0
1
18
0.80
108038254--108038318
7
9.3
7
79
14
55
80
0
1
18
0.80
108044674--108044731
30
1.9
30
82
6
73
37
12
3
46
1.58
108047191--108047227
17
2.1
18
85
14
51
48
5
32
13
1.65
108048627--108048692
28
2.2
28
84
10
78
62
0
0
37
0.96
108053360--108053409
27
1.9
25
84
8
64
44
2
2
52
1.24
108053399--108053491
12
7.9
12
68
23
56
40
1
0
58
1.05
108053448--108053502
20
2.7
20
76
20
60
40
0
0
60
0.97
108053391--108053487
33
2.9
33
90
4
142
40
1
0
58
1.05
108053453--108053502
21
2.4
22
80
12
61
40
0
0
60
0.97
108053453--108053513
19
3.0
20
77
18
54
45
0
0
54
1.00
108053569--108053632
24
2.8
21
80
20
67
32
0
4
62
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108053666--108053720
12
4.0
13
75
25
51
50
1
0
47
1.11
108053774--108053820
24
1.9
25
86
4
69
55
0
0
44
0.99
108053916--108053944
13
2.1
14
93
6
51
75
0
3
20
0.94
108053919--108054011
41
2.3
40
81
10
100
75
5
5
13
1.16
108054439--108054498
19
3.2
18
77
11
59
68
1
3
26
1.15
108055360--108055499
70
2.0
70
98
0
271
40
18
7
33
1.78
108056424--108056509
26
3.4
25
80
7
93
16
13
36
33
1.88
108058990--108059014
13
1.9
13
100
0
50
60
0
0
40
0.97
108060582--108060619
17
2.2
18
85
4
51
55
2
0
42
1.14
108064455--108064704
131
1.9
131
91
0
410
32
18
18
30
1.95
108069128--108069186
18
3.6
18
68
25
58
45
28
22
3
1.68
108069127--108069185
30
2.0
30
100
0
118
45
27
23
3
1.68
108075731--108075771
18
2.5
17
77
14
50
34
0
4
60
1.18
108076495--108076536
12
3.4
12
83
6
57
23
2
0
73
0.94
108080021--108080055
18
1.9
18
94
0
61
28
11
0
60
1.32
108088020--108088065
22
2.1
22
95
0
83
13
41
13
32
1.82
108096424--108096468
22
2.0
22
91
0
72
33
2
15
48
1.57
108100169--108100213
22
2.0
22
91
0
72
33
2
15
48
1.57
108104493--108104540
17
2.7
18
80
6
53
64
4
0
31
1.12
108106207--108106268
31
2.0
31
87
6
90
32
9
9
48
1.69
108107846--108107879
2
16.5
2
87
6
50
47
2
2
47
1.32
108111644--108111689
18
2.5
18
82
3
56
65
2
2
30
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108115933--108115998
21
3.1
22
71
16
68
36
0
0
63
0.95
108116189--108116227
13
3.0
13
92
0
69
7
35
15
41
1.76
108120019--108120079
31
2.0
31
100
0
122
31
6
13
49
1.67
108124105--108124140
19
1.9
19
88
5
56
44
5
0
50
1.25
108124594--108124641
20
2.3
21
79
13
55
52
2
0
45
1.12
108124598--108124649
26
2.0
26
81
7
61
55
3
0
40
1.18
108126302--108126771
203
2.3
207
85
4
607
22
14
25
38
1.91
108128656--108128689
17
1.9
18
94
5
61
20
8
5
64
1.43
108129444--108130098
326
2.0
326
99
0
1301
42
11
18
27
1.84
108133093--108133215
47
2.6
47
88
1
165
31
30
11
26
1.91
108134637--108134689
21
2.5
23
73
14
60
37
3
13
45
1.61
108136388--108136491
51
2.0
51
94
0
181
32
12
23
31
1.92
108141217--108141276
26
2.3
26
82
5
77
61
6
1
30
1.31
108142810--108143118
103
3.0
102
89
2
453
32
21
11
35
1.88
108157437--108157675
120
2.0
120
95
0
433
23
9
29
37
1.87
108157933--108157989
29
2.0
29
85
0
78
35
14
15
35
1.88
108161623--108161653
16
1.9
16
100
0
62
29
6
6
58
1.48
108165902--108166190
148
1.9
150
90
2
467
42
15
16
25
1.88
108167542--108168134
145
4.1
145
80
4
576
39
21
13
25
1.90
108176367--108176399
11
3.1
11
86
8
50
63
0
0
36
0.95
108176367--108176408
21
2.0
21
86
9
59
61
0
2
35
1.09
108177717--108177795
29
2.7
30
75
15
83
39
2
2
55
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108179614--108179659
4
11.5
4
95
0
65
43
23
6
26
1.78
108181967--108182092
60
2.1
59
81
10
148
38
4
17
38
1.71
108186064--108186164
50
2.0
52
82
5
125
60
3
7
27
1.43
108186139--108186181
18
2.4
18
84
0
59
53
2
13
30
1.53
108186262--108186308
25
2.0
24
84
16
62
57
2
17
23
1.50
108186364--108186488
3
43.3
3
73
9
55
61
1
6
30
1.30
108186836--108186867
3
10.7
3
100
0
64
65
0
0
34
0.93
108197307--108197368
7
9.1
7
85
5
83
70
12
1
14
1.23
108200383--108200750
122
3.0
122
79
3
398
27
15
19
38
1.91
108200384--108200753
124
3.0
124
79
4
381
27
14
19
38
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343