genome.fa.s10.2.7.7.80.10.50.1000.335.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  335  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107282852--107283101	100	2.4	104	88	6	357	20	29	24	26	1.99
107283196--107283227	13	2.5	13	94	0	55	56	12	0	31	1.37
107283438--107283495	30	1.9	30	89	0	89	31	24	3	41	1.71
107286149--107286189	9	4.1	10	79	20	50	39	0	0	60	0.96
107286133--107286189	30	1.9	30	85	7	80	35	3	0	61	1.13
107286128--107286201	30	2.5	28	73	16	69	41	4	0	54	1.19
107288724--107288769	22	2.0	23	83	4	58	39	4	0	56	1.19
107288825--107288878	9	6.0	9	80	8	65	27	1	1	68	1.10
107288711--107288878	18	8.8	18	66	20	74	32	2	3	61	1.25
107289040--107289068	3	9.7	3	100	0	58	31	0	0	68	0.89
107289110--107289150	20	2.0	20	100	0	82	51	19	14	14	1.77
107300859--107300890	3	10.7	3	93	0	55	62	0	3	34	1.11
107302128--107302174	21	2.2	22	88	3	69	21	36	19	23	1.95
107311294--107311362	25	2.8	24	75	16	79	60	4	0	34	1.16
107312219--107312434	107	2.0	108	96	0	398	43	5	8	42	1.59
107315726--107315770	23	2.0	23	82	8	56	15	17	13	53	1.73
107316595--107317223	317	2.0	316	94	2	1104	39	18	11	30	1.86
107322126--107322170	19	2.4	19	84	0	54	37	8	2	51	1.46
107322403--107322461	29	2.0	30	87	9	86	44	23	0	32	1.54
107323836--107323912	31	2.5	32	77	14	88	42	14	11	31	1.81
107329761--107329811	18	3.0	17	74	25	54	41	0	0	58	0.98
107329779--107329830	15	3.6	15	80	12	56	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107329908--107329949	15	2.7	16	82	14	52	45	0	2	52	1.13
107329899--107329940	15	2.9	15	82	10	52	47	0	0	52	1.00
107330075--107330184	45	2.6	42	81	8	118	33	28	5	32	1.80
107330165--107330200	16	2.2	16	95	0	63	36	36	2	25	1.70
107330477--107330513	19	1.9	19	94	0	65	35	5	2	56	1.36
107338435--107338477	17	2.5	17	85	14	61	41	0	2	55	1.12
107338434--107338477	8	5.0	9	81	15	56	40	0	2	56	1.11
107338590--107338652	18	3.4	18	70	8	63	17	22	1	58	1.47
107338594--107338658	20	3.3	20	70	8	71	16	24	1	56	1.49
107338582--107338660	38	2.1	38	100	0	158	16	20	2	60	1.47
107349871--107349957	43	2.0	43	100	0	174	37	20	4	36	1.74
107353546--107353598	22	2.4	22	93	6	90	30	18	5	45	1.73
107361837--107361867	15	2.1	15	93	0	53	29	19	19	32	1.96
107369805--107370671	88	9.9	88	93	1	1270	28	22	23	25	1.99
107370875--107371030	43	3.4	43	69	20	127	28	17	25	29	1.97
107370853--107371032	95	1.9	95	94	0	315	28	17	23	30	1.97
107372594--107372645	3	17.3	3	83	0	68	30	3	1	63	1.23
107372776--107372858	35	2.3	35	83	10	105	37	8	1	53	1.39
107377736--107377765	8	3.6	8	91	8	51	73	13	0	13	1.10
107379516--107379621	53	2.0	53	100	0	212	32	11	26	30	1.91
107379936--107380802	88	9.9	88	93	1	1270	28	22	23	25	1.99
107381006--107381161	43	3.4	43	69	20	127	28	17	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107380984--107381163	95	1.9	95	94	0	315	28	17	23	30	1.97
107382721--107382772	3	17.3	3	83	0	68	30	3	1	63	1.23
107386208--107386238	15	2.1	15	93	0	53	29	19	19	32	1.96
107394817--107394874	29	2.0	29	96	0	107	56	10	10	22	1.62
107399998--107400171	59	3.0	60	76	3	156	45	14	14	24	1.84
107409615--107409644	15	1.9	16	93	6	53	66	10	3	20	1.35
107414176--107414209	9	4.0	8	88	11	50	26	0	2	70	1.01
107416264--107416294	12	2.6	12	94	0	53	25	9	22	41	1.84
107422560--107422593	10	3.4	10	83	0	50	61	17	2	17	1.46
107439871--107440030	81	2.0	81	82	2	196	37	17	25	20	1.94
107440022--107440248	60	3.8	60	95	0	418	30	21	14	32	1.94
107443910--107443950	21	2.0	21	90	0	64	19	29	21	29	1.98
107444244--107444292	24	2.0	24	100	0	98	34	24	24	16	1.95
107450758--107450809	24	2.2	24	89	0	77	38	5	7	48	1.56
107450775--107450821	24	2.0	24	86	0	67	38	8	8	44	1.65
107450957--107450985	5	5.8	5	100	0	58	37	0	0	62	0.96
107451244--107451341	19	5.2	19	92	7	164	37	10	16	35	1.82
107451244--107451341	36	2.6	37	90	9	153	37	10	16	35	1.82
107456871--107456916	24	1.9	24	86	8	67	34	10	8	45	1.70
107463968--107464127	81	2.0	81	82	2	196	37	17	25	20	1.94
107464119--107464345	60	3.8	60	97	0	427	30	22	15	31	1.95
107468857--107468903	24	2.0	24	87	8	69	38	6	10	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107473174--107473225	24	2.2	24	89	0	77	36	3	9	50	1.54
107477948--107477988	21	2.0	21	90	0	64	19	29	21	29	1.98
107481487--107481750	103	2.6	103	93	1	440	30	29	21	18	1.97
107481651--107481828	77	2.3	78	96	1	324	33	28	19	19	1.96
107482154--107482217	30	2.1	30	85	5	85	31	26	6	35	1.81
107483242--107483288	24	2.0	24	87	8	69	38	6	10	44	1.65
107487555--107487606	24	2.2	24	89	0	77	36	3	9	50	1.54
107492347--107492387	21	2.0	21	90	0	64	19	29	21	29	1.98
107495273--107495436	60	2.7	60	95	0	292	31	21	15	31	1.95
107500064--107500173	45	2.6	44	81	8	131	31	29	5	33	1.80
107500154--107500202	16	3.1	16	93	0	80	32	36	0	30	1.58
107510248--107510419	36	4.6	38	91	4	262	39	9	13	36	1.79
107510248--107510419	19	9.2	19	88	6	235	39	9	13	36	1.79
107510248--107510419	55	3.1	56	87	8	251	39	9	13	36	1.79
107512246--107512297	24	2.2	24	89	0	77	38	5	7	48	1.56
107512263--107512309	24	2.0	24	86	0	67	38	8	8	44	1.65
107512447--107512494	5	9.6	5	100	0	96	37	0	0	62	0.95
107512750--107512847	19	5.2	19	92	7	164	37	10	16	35	1.82
107512740--107512847	36	2.9	35	78	20	112	37	10	15	36	1.82
107519616--107519675	11	5.9	10	73	11	59	83	0	11	5	0.80
107519627--107519676	21	2.4	21	82	0	64	82	0	10	8	0.86
107520633--107520771	43	3.3	43	67	15	126	31	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107520676--107520813	41	3.3	41	70	18	122	29	24	22	23	1.99
107520623--107520912	84	3.4	84	91	2	440	31	22	22	24	1.98
107521031--107521192	87	1.8	88	86	2	236	33	20	20	25	1.97
107521029--107521225	87	2.2	88	79	8	231	35	19	21	24	1.96
107520915--107521319	220	1.8	220	99	0	801	33	19	20	25	1.97
107521730--107521841	19	5.8	19	86	9	147	37	11	14	36	1.82
107521720--107521815	36	2.6	35	74	21	88	38	12	13	35	1.83
107536686--107536720	12	2.8	13	91	4	54	20	5	2	71	1.19
107546417--107546500	6	14.3	6	89	2	109	78	4	1	15	0.98
107548115--107548180	30	2.2	31	82	17	86	68	1	3	27	1.13
107549989--107550044	29	1.9	29	100	0	112	37	14	26	21	1.92
107550050--107550306	33	7.8	33	85	2	288	29	16	21	31	1.96
107550049--107550314	66	4.1	66	84	4	317	30	16	21	31	1.95
107550094--107550404	33	9.7	32	81	8	167	32	16	19	31	1.94
107550285--107550405	28	4.1	28	81	12	152	38	14	16	31	1.88
107561432--107561486	28	2.0	28	100	0	110	47	14	20	18	1.83
107561794--107561834	23	1.9	21	85	14	57	70	9	2	17	1.25
107579690--107579751	27	2.3	26	76	13	63	38	1	11	48	1.49
107579746--107579793	20	2.5	20	89	3	71	29	4	2	64	1.23
107583681--107583706	11	2.4	11	100	0	52	69	0	0	30	0.89
107590908--107590941	17	2.0	17	94	0	59	44	50	0	5	1.26
107595546--107595579	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107599621--107599645	10	2.5	10	100	0	50	40	36	0	24	1.55
107601830--107601934	50	2.1	50	96	1	194	40	20	7	30	1.81
107602920--107602956	20	1.9	18	89	10	56	35	21	0	43	1.53
107608289--107608313	11	2.3	11	100	0	50	36	20	0	44	1.52
107609912--107610163	129	1.9	130	91	2	409	37	19	15	26	1.93
107611848--107612109	126	2.0	128	94	3	456	23	37	16	22	1.93
107614507--107614566	29	2.1	29	84	6	77	33	11	10	45	1.74
107615989--107616027	15	2.6	15	83	0	51	56	5	10	28	1.54
107618179--107618205	13	2.1	13	100	0	54	48	14	14	22	1.81
107620457--107620503	20	2.4	19	80	16	51	42	2	2	53	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343