genome.fa.s10.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  211  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69388228--69388409	99	1.8	99	92	0	310	27	17	26	29	1.97
69393581--69393620	19	2.1	19	90	0	62	27	20	7	45	1.78
69393823--69393854	9	3.6	9	100	0	64	28	0	9	62	1.26
69394921--69395152	127	1.8	127	89	0	365	31	15	15	37	1.90
69398363--69398407	19	2.4	19	85	7	56	28	22	8	40	1.84
69406513--69406600	46	1.9	46	85	0	122	34	15	25	25	1.95
69407003--69407786	43	17.7	43	69	16	254	31	17	22	28	1.96
69406961--69407796	179	4.7	179	82	4	860	31	17	22	28	1.96
69407623--69407786	45	3.6	45	88	0	229	29	21	23	24	1.99
69407537--69407809	90	3.1	88	78	5	277	31	20	20	27	1.98
69409898--69410129	127	1.8	127	87	1	349	30	15	16	37	1.90
69431017--69431076	31	1.9	32	89	3	95	35	15	15	35	1.88
69435017--69435049	15	2.2	15	100	0	66	39	0	12	48	1.40
69438778--69438832	16	3.3	17	82	14	62	20	3	0	76	0.94
69438778--69438826	5	9.4	5	80	14	55	18	4	0	77	0.92
69440276--69440308	15	2.2	15	100	0	66	39	0	12	48	1.40
69441077--69441114	17	2.1	19	90	9	62	26	13	5	55	1.59
69450645--69450692	16	2.9	16	75	3	51	39	0	0	60	0.97
69450884--69450922	19	2.0	20	90	5	62	20	0	7	71	1.10
69450903--69450948	25	1.9	23	86	8	65	28	0	8	63	1.24
69452881--69452910	10	3.0	10	95	0	51	26	0	0	73	0.84
69452882--69452911	15	2.0	15	93	0	51	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69453380--69453418	17	2.3	17	86	0	51	43	2	2	51	1.29
69453450--69453502	26	2.0	26	89	7	81	41	3	0	54	1.18
69453480--69453512	17	1.9	17	93	0	57	48	0	3	48	1.17
69453536--69453593	17	3.4	16	79	13	62	53	3	1	41	1.28
69456622--69456646	12	2.1	12	100	0	50	24	0	0	76	0.80
69456797--69456852	28	2.0	28	83	16	71	55	1	0	42	1.10
69460812--69460873	31	2.0	32	87	3	90	37	20	11	30	1.88
69465904--69465990	38	2.2	38	95	4	156	36	19	19	24	1.95
69478710--69478774	10	6.8	10	69	20	50	26	1	1	70	1.04
69478720--69478770	13	3.8	13	76	19	59	23	1	1	72	1.05
69478720--69478783	20	3.2	20	80	13	69	23	3	1	71	1.08
69478713--69478781	28	2.5	27	83	6	93	24	2	1	71	1.09
69478713--69478773	12	5.2	11	71	21	52	24	1	1	72	1.03
69482765--69482807	22	2.0	22	95	0	77	44	11	4	39	1.62
69498049--69498073	7	3.6	7	100	0	50	32	0	0	68	0.90
69498165--69498215	24	2.1	24	100	0	102	15	25	21	37	1.93
69502381--69502539	40	4.0	40	82	1	167	18	28	14	38	1.90
69507772--69507898	46	2.7	47	83	9	154	30	16	28	24	1.96
69507856--69508126	142	1.9	145	81	8	340	27	18	27	26	1.98
69507963--69508088	49	2.6	49	88	2	173	30	20	25	23	1.98
69512563--69512601	21	1.9	20	84	5	51	43	12	15	28	1.83
69525726--69525756	16	1.9	16	100	0	62	51	22	6	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69526983--69527022	16	2.5	16	91	0	62	52	20	17	10	1.72
69527242--69527297	29	1.9	29	88	0	85	25	16	33	25	1.95
69527251--69527360	29	3.8	29	86	2	132	26	14	33	25	1.94
69539182--69539223	21	2.0	21	100	0	84	33	4	9	52	1.55
69539316--69539458	68	2.1	68	98	0	277	48	5	6	39	1.54
69541170--69541241	36	2.0	36	100	0	144	38	27	13	19	1.90
69544753--69544794	15	3.0	14	83	10	50	38	14	9	38	1.78
69549707--69549761	28	2.0	27	82	3	65	47	3	21	27	1.68
69551341--69551392	17	2.9	18	83	11	54	23	1	23	51	1.58
69567132--69567158	7	3.9	7	100	0	54	88	0	0	11	0.50
69567861--69567912	3	17.3	3	91	0	86	67	3	0	28	1.08
69573010--69573083	37	2.0	37	100	0	148	43	18	5	32	1.73
69574055--69574088	16	2.1	16	100	0	68	47	17	17	17	1.84
69576480--69576527	24	2.0	24	95	0	87	22	20	10	45	1.81
69580932--69580991	21	2.9	21	90	2	95	1	20	1	76	0.96
69580941--69580991	7	7.3	7	81	16	61	1	21	0	76	0.88
69585856--69585896	20	2.0	21	90	4	66	51	4	0	43	1.23
69586186--69586231	17	2.7	17	77	12	58	21	6	2	69	1.22
69591406--69591476	34	2.1	34	91	0	115	30	11	14	43	1.80
69591567--69591674	45	2.4	45	84	0	126	28	20	12	38	1.88
69593244--69593328	21	4.0	21	76	4	71	37	25	22	14	1.92
69593242--69593316	21	3.4	23	78	12	86	37	26	22	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69593699--69593756	15	3.8	15	88	2	89	51	12	0	36	1.39
69595288--69595312	6	4.2	6	100	0	50	52	0	0	48	1.00
69604601--69604668	23	2.9	23	75	12	59	44	0	4	51	1.21
69606908--69606958	21	2.4	22	86	3	68	31	1	7	58	1.37
69607681--69607741	22	2.6	22	73	21	54	24	21	3	50	1.63
69619843--69620078	88	2.9	76	75	17	206	36	21	21	20	1.95
69619965--69620080	43	2.6	44	76	11	121	37	21	23	17	1.93
69619919--69620119	88	2.3	87	86	4	262	36	20	22	19	1.95
69621851--69621901	21	2.4	22	86	3	68	31	3	7	56	1.46
69622630--69622690	22	2.6	22	73	21	54	24	21	3	50	1.63
69638893--69639059	83	2.0	83	98	0	325	37	10	13	38	1.79
69647019--69647050	6	5.3	6	100	0	64	46	15	18	18	1.84
69647516--69647560	17	2.6	18	82	7	65	42	4	0	53	1.21
69656812--69657126	49	6.6	49	76	9	168	23	26	20	29	1.99
69656807--69657126	94	3.3	96	78	6	276	23	26	20	29	1.99
69656898--69657135	48	5.0	48	79	6	214	22	26	21	29	1.99
69665212--69665472	30	8.8	29	73	9	127	21	25	13	39	1.90
69665218--69665445	119	1.9	119	88	0	339	21	26	13	39	1.90
69665218--69665472	119	2.1	118	85	1	330	21	25	13	39	1.90
69668246--69668350	27	3.9	26	79	7	102	40	16	8	34	1.79
69668261--69668367	54	2.0	54	81	7	128	40	19	9	30	1.83
69668356--69668566	27	7.8	27	83	4	246	29	24	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69668356--69668566	81	2.6	82	85	3	284	29	24	7	38	1.83
69668545--69668684	54	2.6	54	86	4	192	40	21	7	30	1.80
69668302--69668603	81	3.7	81	75	0	246	33	23	7	36	1.83
69668545--69668797	54	4.6	54	75	11	187	39	20	8	31	1.83
69668558--69668796	27	8.8	27	75	7	153	40	19	8	31	1.81
69668815--69668892	27	2.9	27	75	11	79	35	20	20	23	1.96
69670052--69670099	25	1.9	25	91	0	78	35	25	14	25	1.94
69670138--69670194	9	5.9	9	73	15	51	35	8	21	35	1.84
69670136--69670206	20	3.5	20	96	0	133	35	11	19	33	1.88
69670147--69670205	11	5.7	11	73	15	63	35	11	20	32	1.89
69670253--69670364	25	4.6	24	94	3	181	27	21	23	27	1.99
69670590--69670653	31	2.1	31	90	0	101	35	15	23	25	1.94
69683577--69683616	21	2.0	20	85	5	53	20	27	37	15	1.92
69684800--69684922	49	2.5	49	85	4	158	21	29	21	27	1.99
69684897--69685009	44	2.6	44	88	0	172	34	31	15	17	1.92
69687387--69687457	28	2.5	28	73	8	72	22	16	23	36	1.94
69688192--69688235	23	1.9	23	100	0	88	43	9	4	43	1.56
69688192--69688229	13	3.2	13	78	21	55	44	7	5	42	1.56
69689562--69689594	13	2.4	14	95	5	59	57	12	0	30	1.35
69694043--69694196	80	1.9	80	94	0	272	25	21	14	37	1.92
69695920--69696142	119	1.9	120	87	6	337	25	27	22	24	2.00
69695918--69696142	79	2.8	80	81	7	228	25	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69695899--69696142	40	6.1	40	82	8	275	25	27	22	25	2.00
69704102--69704324	119	1.9	120	87	6	337	25	27	22	24	2.00
69704100--69704324	79	2.8	80	81	7	228	25	28	22	24	2.00
69704081--69704324	40	6.1	40	82	8	275	25	27	22	25	2.00
69708150--69708212	28	2.2	29	91	2	101	33	6	17	42	1.74
69731868--69731913	21	2.2	21	96	0	83	32	8	17	41	1.80
69732660--69732711	25	2.1	24	85	3	68	17	21	21	40	1.91
69735415--69735471	30	1.9	29	85	3	78	45	1	7	45	1.40
69742400--69742529	47	2.8	45	76	15	140	29	18	27	24	1.98
69742600--69742712	49	2.3	49	81	7	131	24	19	31	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343