genome.fa.s10.2.7.7.80.10.50.1000.328.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  328  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105457351--105457408	26	2.2	26	96	0	107	34	3	24	37	1.72
105458876--105458928	26	2.0	26	85	7	72	37	22	15	24	1.92
105465523--105465574	25	2.1	25	100	0	104	51	0	11	36	1.38
105467402--105467504	54	1.9	54	93	0	179	31	15	23	30	1.95
105477046--105477085	18	2.2	19	91	8	66	30	7	0	62	1.23
105477616--105477656	10	4.1	10	90	9	66	68	0	0	31	0.90
105477617--105477665	9	5.1	9	82	9	53	69	0	0	30	0.89
105477617--105477665	19	2.5	20	86	6	73	69	0	0	30	0.89
105482615--105482679	28	2.3	28	89	5	96	33	0	6	60	1.22
105487670--105487715	23	2.0	23	100	0	92	43	13	17	26	1.85
105492116--105492195	13	6.3	12	70	17	56	16	6	0	77	0.96
105492118--105492193	30	2.5	31	81	8	95	17	6	0	76	0.99
105492151--105492195	20	2.2	21	92	4	74	17	4	0	77	0.92
105493140--105493370	118	2.0	118	91	0	372	23	17	29	28	1.97
105495780--105495838	21	2.8	22	77	12	61	23	35	16	23	1.95
105496793--105496834	17	2.3	18	88	12	59	59	0	0	40	0.97
105496789--105496829	21	2.0	20	85	4	55	53	0	0	46	1.00
105497926--105498040	58	2.0	57	83	6	144	42	17	5	34	1.72
105502181--105502218	17	2.2	17	100	0	76	84	5	10	0	0.77
105503284--105503337	26	2.1	25	86	3	72	51	5	9	33	1.57
105507224--105507260	10	3.7	10	85	0	56	70	0	2	27	1.01
105508050--105508105	28	2.0	29	96	3	105	53	3	10	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105509602--105509687	35	2.3	37	86	7	113	63	0	0	36	0.94
105509613--105509681	27	2.5	28	78	17	58	59	0	0	40	0.97
105509631--105509688	10	6.6	8	78	21	55	62	0	0	37	0.96
105509631--105509688	17	3.3	17	79	13	64	62	0	0	37	0.96
105510414--105510463	10	5.0	10	76	13	50	22	8	4	66	1.35
105511176--105511214	18	2.2	19	90	9	64	25	10	5	58	1.51
105512208--105512255	25	1.9	25	87	8	71	25	2	2	70	1.09
105515226--105515261	16	2.2	16	90	0	54	55	11	5	27	1.57
105517466--105517504	17	2.2	18	86	4	53	43	25	7	23	1.80
105520604--105520671	33	2.1	33	97	0	127	41	5	1	51	1.35
105524750--105524790	21	2.0	21	85	9	57	9	19	2	68	1.29
105524768--105524793	12	2.2	12	100	0	52	7	15	0	76	0.99
105535741--105535792	13	4.0	13	77	7	61	51	1	0	46	1.12
105535923--105535992	34	2.0	35	81	8	81	50	7	2	40	1.45
105535992--105536419	230	1.9	227	82	8	552	45	6	11	37	1.66
105536939--105536988	9	5.7	9	77	11	50	58	0	4	38	1.17
105538677--105538760	26	3.2	26	96	0	150	33	4	25	36	1.77
105544363--105544446	26	3.2	26	96	0	150	33	4	25	36	1.77
105548750--105548791	22	2.0	21	85	4	57	59	2	14	23	1.47
105548803--105548868	33	2.0	34	82	8	82	53	7	6	33	1.54
105548938--105549066	24	5.2	25	71	17	85	53	4	8	33	1.52
105549048--105549095	21	2.3	20	82	3	51	52	10	6	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105549368--105549637	124	2.2	124	97	1	515	58	8	3	29	1.46
105550204--105550237	15	2.1	17	89	10	54	23	0	0	76	0.79
105551446--105551925	54	8.7	54	91	5	744	37	18	14	29	1.90
105551446--105551925	115	4.3	108	90	5	753	37	18	14	29	1.90
105551893--105551960	34	2.0	34	94	0	118	22	22	13	42	1.87
105551839--105552013	88	2.0	88	93	2	298	32	19	13	34	1.91
105551927--105552251	54	5.9	55	91	4	512	37	17	13	31	1.89
105551789--105552068	142	2.0	142	94	1	499	35	18	13	32	1.91
105551724--105552124	196	2.0	198	92	4	664	35	19	13	31	1.91
105552200--105552401	73	2.8	71	87	6	262	34	21	15	28	1.94
105552318--105552600	93	3.1	89	78	9	320	41	17	16	24	1.89
105552479--105552510	14	2.3	14	94	0	55	65	6	15	12	1.44
105552577--105552614	14	2.7	14	84	8	51	68	2	13	15	1.32
105552663--105552713	14	3.6	14	89	0	66	54	5	17	21	1.63
105552765--105552799	14	2.5	14	90	0	52	60	5	14	20	1.54
105552678--105552853	86	2.0	86	90	1	271	37	19	17	25	1.93
105561316--105561357	22	2.0	21	85	4	57	59	2	14	23	1.47
105561506--105561632	24	5.2	25	71	17	81	53	4	8	33	1.52
105561614--105561661	21	2.3	20	82	3	51	52	10	6	31	1.60
105562047--105562095	3	16.0	3	95	4	89	65	2	0	32	1.04
105562648--105562686	18	2.1	19	90	4	62	12	7	0	79	0.93
105566593--105566631	17	2.3	17	100	0	78	25	0	20	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105567966--105568081	57	2.1	54	91	4	187	32	12	10	44	1.75
105568996--105569153	80	2.0	81	81	8	189	39	5	2	51	1.39
105572786--105572819	18	2.0	17	88	11	52	52	0	0	47	1.00
105573249--105573291	16	2.6	17	82	14	54	46	6	0	46	1.30
105573037--105573504	230	2.0	231	84	6	610	46	6	9	37	1.63
105573558--105573600	21	2.2	19	83	8	50	9	6	0	83	0.80
105573894--105573921	13	2.2	13	100	0	56	32	7	14	46	1.71
105574186--105574281	48	2.0	48	97	0	183	35	22	15	26	1.94
105578560--105578593	17	1.9	18	94	5	61	26	5	5	61	1.42
105579143--105579185	16	2.6	17	82	14	54	46	6	0	46	1.30
105583198--105583258	30	2.0	30	83	0	77	32	22	6	37	1.80
105586934--105587017	26	3.2	26	91	3	134	33	25	5	35	1.80
105588217--105588264	9	5.1	9	75	9	51	56	0	4	39	1.19
105588288--105588384	46	2.1	47	96	1	178	31	7	10	50	1.64
105589201--105589238	16	2.4	17	82	13	53	47	7	0	44	1.32
105589689--105589753	32	2.0	32	100	0	130	30	6	24	38	1.80
105591263--105591315	26	2.0	26	85	7	72	37	22	15	24	1.92
105597735--105597799	32	2.0	32	100	0	130	30	6	24	38	1.80
105599325--105599377	26	2.0	26	85	7	72	35	22	15	26	1.93
105600123--105600166	21	2.1	21	83	8	54	59	6	4	29	1.44
105605392--105605430	18	2.1	19	85	4	53	25	12	7	53	1.65
105605550--105605610	18	3.1	20	78	17	65	44	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105605723--105605769	15	3.3	15	86	13	57	31	0	14	53	1.42
105605996--105606086	28	3.3	28	70	17	75	35	14	3	47	1.60
105607682--105607721	18	2.1	20	86	9	57	55	0	7	37	1.29
105607457--105607879	229	1.8	225	82	8	539	47	5	9	36	1.61
105609698--105609799	30	3.4	30	86	2	143	29	21	3	45	1.70
105610186--105610227	3	13.7	3	80	14	50	64	0	35	0	0.94
105610186--105610213	10	2.8	10	100	0	56	64	0	35	0	0.94
105610182--105610239	24	2.5	22	81	13	71	68	0	31	0	0.89
105610339--105610379	14	2.8	15	82	14	50	82	14	2	0	0.76
105610529--105610595	12	6.3	11	77	19	54	79	0	20	0	0.74
105610529--105610595	21	3.1	21	78	16	75	79	0	20	0	0.74
105610735--105610782	21	2.2	21	85	3	60	25	0	2	72	0.95
105610722--105610783	5	11.4	5	83	11	52	27	0	1	70	0.96
105610958--105611459	17	28.5	18	70	15	248	33	11	11	43	1.77
105610922--105611014	34	2.7	34	85	5	107	30	16	7	46	1.74
105610958--105611310	38	9.7	37	72	15	197	33	12	11	42	1.78
105610958--105611199	36	6.7	38	73	12	172	33	13	10	42	1.78
105610992--105611166	74	2.4	73	82	5	192	36	13	9	41	1.76
105611070--105611176	54	1.9	55	83	7	137	36	13	11	39	1.80
105610958--105611303	35	9.6	35	71	14	179	32	13	11	42	1.79
105611108--105611460	35	10.1	34	71	9	137	33	10	11	43	1.76
105611438--105611491	21	2.6	20	80	8	72	44	9	7	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105619623--105620236	192	3.2	192	96	1	1133	30	13	20	35	1.92
105620255--105620288	16	2.1	17	88	5	52	17	11	5	64	1.45
105620195--105620443	91	2.8	87	82	10	292	26	18	18	35	1.94
105620195--105620452	85	2.9	88	81	10	307	26	17	18	37	1.93
105620551--105620768	54	4.1	55	86	8	306	29	16	16	37	1.91
105620559--105620768	106	2.0	104	89	3	323	30	16	17	36	1.91
105621039--105621140	30	3.4	31	83	5	122	30	22	2	44	1.68
105621539--105621576	18	2.1	18	85	9	51	68	0	31	0	0.90
105621525--105621584	24	2.5	24	86	2	77	68	0	30	1	0.99
105621525--105621571	13	3.8	12	78	21	53	63	0	34	2	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343