genome.fa.s10.2.7.7.80.10.50.1000.291.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  291  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96080472--96080509	19	2.0	20	84	5	51	63	5	7	23	1.42
96086708--96086767	29	2.1	29	100	0	120	46	26	0	26	1.53
96110497--96110550	12	4.6	12	78	17	51	74	1	16	7	1.14
96110732--96110807	31	2.5	31	85	6	102	23	11	21	43	1.85
96114817--96114933	40	2.9	39	83	1	126	33	23	18	24	1.97
96115508--96115559	14	3.6	14	74	5	59	17	1	36	44	1.60
96115508--96115547	21	1.9	21	84	0	53	15	2	37	45	1.59
96115508--96115561	15	3.7	15	78	7	67	16	1	37	44	1.59
96115563--96115603	15	2.7	15	88	0	64	19	4	51	24	1.66
96115919--96115972	23	2.3	23	83	6	63	46	5	1	46	1.37
96116251--96116329	7	10.4	8	83	15	57	67	2	0	30	1.04
96116277--96116341	7	9.7	7	93	6	100	75	0	0	24	0.81
96116463--96116505	19	2.2	20	80	19	56	67	0	6	25	1.15
96116501--96116591	42	2.2	41	86	2	119	47	10	15	26	1.78
96117481--96117515	3	11.7	3	100	0	70	0	0	31	68	0.90
96119210--96119274	31	2.1	31	97	0	121	44	10	7	36	1.68
96120814--96120865	18	2.7	19	70	8	52	26	5	3	63	1.34
96121932--96122579	126	5.1	126	87	2	877	37	16	16	29	1.91
96126151--96126185	18	1.9	18	94	0	61	40	11	28	20	1.87
96126242--96126308	30	2.3	29	81	2	80	8	20	40	29	1.83
96126805--96126854	7	7.0	7	88	2	73	56	12	4	28	1.54
96128041--96128090	25	2.0	25	100	0	100	44	20	4	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96128193--96128259	27	2.5	27	92	0	116	20	25	11	41	1.87
96130793--96130875	26	3.4	26	70	20	88	61	2	7	28	1.35
96130821--96130897	22	3.3	22	68	19	66	58	1	9	31	1.37
96130797--96130901	48	2.2	48	98	0	201	59	1	7	31	1.37
96130805--96130883	26	3.2	26	69	20	87	59	2	7	30	1.38
96143203--96143227	13	1.9	13	100	0	50	64	0	20	16	1.30
96146731--96146761	12	2.6	12	94	0	53	77	0	16	6	0.97
96146940--96147061	13	10.6	13	73	21	89	36	48	0	14	1.44
96146949--96146974	9	2.9	9	100	0	52	34	53	0	11	1.37
96146980--96147061	35	2.3	35	87	8	130	37	48	0	13	1.42
96146939--96147055	48	2.6	44	80	10	153	37	47	0	14	1.44
96147457--96147539	3	27.3	3	73	20	59	30	3	1	65	1.17
96147461--96147543	18	4.4	18	81	13	87	31	3	1	63	1.19
96147742--96147788	12	4.0	12	80	2	51	31	0	6	61	1.21
96150366--96150412	19	2.5	19	89	6	69	27	21	8	42	1.81
96154801--96154925	61	2.0	60	90	7	196	32	16	12	37	1.87
96155070--96155453	205	1.9	205	90	1	608	31	18	21	27	1.97
96155544--96156648	132	8.4	132	92	0	1773	31	18	23	26	1.97
96156948--96157041	13	7.5	13	68	20	74	36	48	0	14	1.44
96156948--96157028	22	3.9	22	81	15	109	35	49	0	14	1.44
96156957--96156993	9	4.1	9	100	0	74	35	54	0	10	1.36
96157455--96157521	9	7.1	9	73	21	50	29	4	1	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96157450--96157525	24	2.9	24	72	23	64	30	3	1	64	1.20
96161970--96162050	31	2.6	30	77	9	83	44	13	7	34	1.72
96162685--96162739	20	2.8	20	71	23	53	56	0	1	41	1.10
96165909--96165960	24	2.1	25	82	3	61	40	5	0	53	1.25
96169783--96169912	17	7.7	17	67	20	67	50	3	2	44	1.30
96169776--96169911	68	2.0	70	89	2	213	49	4	2	44	1.34
96171761--96171817	27	2.1	27	86	3	78	57	5	5	31	1.43
96172438--96172486	23	2.1	23	85	7	64	65	10	8	16	1.46
96172596--96172650	24	2.4	23	88	11	78	56	0	9	34	1.31
96174472--96174662	75	2.6	75	94	0	339	26	21	18	34	1.96
96187241--96187305	33	2.0	33	96	0	121	44	3	10	41	1.55
96187249--96187319	33	2.2	33	86	0	97	50	4	8	36	1.52
96187610--96187657	26	2.0	25	88	12	73	68	10	6	14	1.37
96187767--96187823	22	2.6	22	86	8	73	57	0	8	33	1.29
96190947--96191120	87	2.0	86	92	3	287	33	27	4	33	1.77
96191306--96191366	13	4.6	13	74	10	61	36	1	1	60	1.16
96191764--96191823	30	1.9	33	83	12	83	51	3	0	45	1.17
96201171--96201195	12	2.1	12	100	0	50	40	0	8	52	1.31
96201216--96201268	27	2.0	27	89	7	83	43	0	5	50	1.25
96201223--96201277	27	2.2	24	81	12	58	50	0	5	43	1.25
96203014--96203053	8	5.0	8	81	0	53	55	22	20	2	1.56
96203014--96203053	16	2.5	16	91	0	71	55	22	20	2	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96203663--96203708	20	2.3	21	82	14	62	26	17	28	28	1.98
96205664--96205889	111	2.0	110	80	5	251	29	19	19	31	1.96
96206085--96206110	12	2.2	12	100	0	52	0	7	15	76	0.99
96208935--96209007	22	3.4	21	74	11	58	27	26	34	12	1.92
96208948--96209027	21	3.8	21	75	3	70	25	30	33	11	1.90
96208940--96209024	43	2.0	43	88	0	125	27	28	34	10	1.90
96211359--96211389	15	2.1	15	100	0	62	19	19	0	61	1.35
96211391--96211581	44	4.3	44	97	0	355	50	12	0	36	1.43
96211980--96212094	20	5.4	21	74	17	78	59	1	14	24	1.45
96212024--96212094	23	3.0	23	85	6	90	57	2	15	23	1.51
96212061--96212094	12	2.8	12	81	0	50	58	0	14	26	1.36
96213613--96214028	90	4.6	90	89	2	597	51	13	6	27	1.67
96213613--96214028	179	2.3	180	84	5	572	51	13	6	27	1.67
96213662--96214075	179	2.3	178	85	5	489	51	14	7	27	1.67
96214684--96214915	113	2.1	114	87	3	335	31	21	19	28	1.97
96215797--96215822	9	2.9	9	100	0	52	19	11	11	57	1.63
96221124--96221265	40	3.6	39	83	3	160	34	17	27	20	1.95
96223958--96223993	18	2.0	18	88	0	54	33	0	0	66	0.92
96230064--96230831	155	4.8	158	76	10	618	31	9	22	37	1.85
96230092--96230831	316	2.3	320	78	9	733	31	8	22	37	1.84
96237172--96237273	30	3.4	31	83	5	122	29	22	3	44	1.71
96237661--96237732	3	24.0	3	76	16	53	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96237661--96237720	24	2.4	25	83	13	79	68	0	31	0	0.90
96237661--96237732	18	4.2	17	76	15	67	70	0	29	0	0.87
96237662--96237732	29	2.4	29	81	9	81	71	0	28	0	0.86
96237664--96237731	35	2.0	34	88	2	100	70	0	29	0	0.87
96237675--96237727	24	2.2	24	83	6	63	73	0	26	0	0.83
96237809--96237860	15	3.4	14	80	15	59	82	13	3	0	0.80
96237821--96237860	20	2.0	20	85	5	53	82	12	5	0	0.82
96237995--96238064	11	6.3	11	83	3	77	80	0	20	0	0.72
96237999--96238062	14	4.4	14	69	19	51	81	0	18	0	0.70
96238198--96238235	16	2.3	17	86	4	51	23	0	2	73	0.95
96238622--96238730	16	6.2	18	78	15	86	32	11	8	48	1.68
96238617--96238783	17	9.5	17	75	14	126	30	12	8	47	1.72
96238642--96238782	35	4.1	35	80	4	155	31	12	9	47	1.72
96238621--96238783	35	4.7	34	78	8	141	31	12	9	47	1.72
96238744--96238872	39	3.4	38	71	14	106	37	9	11	41	1.74
96250503--96250678	71	2.5	69	84	5	203	30	14	22	32	1.93
96250558--96250801	123	2.0	120	82	5	294	30	13	19	36	1.90
96250442--96252077	192	8.5	192	94	3	2827	29	13	20	36	1.91
96250960--96251185	121	1.9	121	84	5	305	30	14	21	34	1.93
96251343--96251951	121	4.8	122	67	20	319	30	13	20	36	1.91
96251458--96251834	71	5.6	69	72	14	252	29	14	20	35	1.92
96251590--96251696	54	2.0	52	83	3	133	28	11	16	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96250442--96252077	769	2.1	768	94	3	2866	29	13	20	36	1.91
96251921--96252192	119	2.3	118	95	3	494	29	13	22	34	1.93
96251729--96252383	306	2.1	312	95	4	1186	29	14	21	34	1.93
96252342--96252519	66	2.6	68	79	11	177	30	14	21	33	1.93
96251518--96252572	496	2.1	502	93	5	1820	29	13	20	35	1.91
96252608--96252824	118	1.8	118	82	3	276	31	13	21	34	1.92
96252040--96254491	769	3.2	768	97	1	4638	29	13	20	35	1.92
96254141--96254367	122	1.9	122	83	3	296	30	14	21	33	1.92
96254408--96254613	54	3.5	54	67	17	160	27	14	21	36	1.92
96254331--96254649	123	2.6	123	94	1	548	26	14	21	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343