Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  136  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45605544--45605638
29
3.3
29
83
4
104
28
32
13
25
1.94
45605857--45605889
16
2.1
16
94
0
57
18
24
15
42
1.88
45616336--45616378
18
2.4
18
92
0
68
20
27
20
30
1.98
45616902--45616957
28
2.0
28
92
0
94
30
8
30
30
1.88
45620539--45620651
6
18.3
6
74
15
97
51
15
15
17
1.77
45620565--45620610
13
3.6
13
77
16
60
50
17
17
15
1.79
45620553--45620623
25
2.8
25
100
0
142
52
16
15
15
1.76
45620539--45620651
31
3.9
29
80
16
119
51
15
15
17
1.77
45621054--45621464
27
15.3
26
83
4
340
25
18
19
36
1.94
45621053--45621464
54
7.6
54
84
3
402
25
18
19
36
1.94
45621072--45621464
81
4.9
81
84
5
472
25
18
19
36
1.94
45638781--45638964
67
2.8
64
78
7
201
29
16
29
23
1.97
45642317--45642368
27
2.0
26
88
3
77
34
19
26
19
1.95
45645093--45645129
19
1.9
19
94
0
65
56
13
8
21
1.63
45647943--45647980
10
3.5
11
86
13
53
18
5
7
68
1.34
45649341--45649403
18
3.4
18
80
8
74
68
3
15
12
1.33
45650008--45650104
30
3.2
30
76
2
106
27
27
15
28
1.96
45653284--45653321
20
1.9
20
88
0
58
31
36
13
18
1.89
45655958--45656063
48
2.2
47
85
9
135
59
1
24
14
1.45
45657734--45657780
20
2.3
20
85
0
67
29
36
12
21
1.91
45661793--45662860
533
2.0
533
100
0
2136
24
22
19
33
1.97
45669122--45669186
20
3.3
19
73
16
51
38
16
21
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45670960--45671019
32
1.9
32
83
12
81
11
26
6
55
1.60
45671022--45671136
6
19.3
6
72
19
82
3
19
0
77
0.91
45671022--45671138
11
10.5
11
72
22
93
3
19
0
76
0.92
45671022--45671138
5
22.0
5
73
21
80
3
19
0
76
0.92
45672173--45672218
11
4.1
11
82
2
56
13
10
4
71
1.27
45672174--45672251
28
3.3
22
71
23
61
15
8
5
70
1.30
45674068--45674154
19
4.7
19
69
13
65
44
14
6
33
1.72
45674058--45674186
54
2.4
54
86
2
179
41
16
7
34
1.77
45674122--45674160
19
2.1
19
90
0
60
48
12
7
30
1.69
45676490--45676543
20
2.7
20
82
0
63
24
20
18
37
1.94
45676490--45676563
30
2.5
30
86
8
98
21
20
18
39
1.93
45676490--45676554
20
3.2
20
71
16
53
23
21
16
38
1.93
45677419--45677443
13
1.9
13
100
0
50
84
8
0
8
0.79
45677533--45677585
13
3.7
14
79
18
56
79
3
13
3
1.01
45678601--45678714
6
18.5
6
71
7
77
72
4
16
6
1.21
45678571--45678663
18
5.3
18
74
8
75
70
4
16
8
1.28
45678668--45678725
14
4.1
15
70
18
52
72
1
17
8
1.18
45678670--45678726
13
4.2
13
73
20
53
73
1
15
8
1.16
45678669--45678726
27
2.1
27
87
6
82
72
1
17
8
1.18
45678577--45678706
12
10.8
12
72
17
74
70
3
17
8
1.25
45678723--45678785
33
1.9
33
84
12
85
53
6
26
12
1.62
45680559--45680612
20
2.7
20
82
0
63
24
20
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45680559--45680632
30
2.5
30
86
8
98
21
20
18
39
1.93
45680559--45680623
20
3.2
20
71
16
53
23
21
16
38
1.93
45681471--45681522
20
2.5
20
79
11
61
42
17
23
17
1.89
45683402--45683498
30
3.2
30
71
8
90
27
14
28
28
1.95
45686818--45686900
30
2.7
30
81
9
89
13
21
1
63
1.35
45686851--45686906
18
3.1
18
76
5
51
7
19
3
69
1.27
45686876--45686900
12
2.1
12
100
0
50
8
16
0
76
1.02
45686969--45687025
5
11.0
5
78
17
55
3
17
0
78
0.88
45689561--45689659
30
3.3
30
72
8
94
28
14
29
28
1.95
45691465--45691506
19
2.3
19
83
4
50
14
14
2
69
1.30
45691472--45691522
19
2.7
19
82
8
61
11
17
0
70
1.16
45691527--45691578
16
3.1
16
84
10
68
7
26
3
61
1.41
45691527--45691577
18
2.9
18
88
5
70
7
25
3
62
1.40
45715648--45715681
15
2.3
15
89
0
50
35
29
32
2
1.73
45720744--45720796
23
2.4
22
76
20
56
9
18
1
69
1.25
45724130--45724173
22
2.0
22
95
0
79
25
36
4
34
1.76
45725766--45725805
19
2.2
18
90
4
62
55
15
0
30
1.41
45725870--45725962
19
5.1
19
72
12
77
46
13
8
31
1.74
45725860--45725988
54
2.4
54
93
0
213
42
15
8
33
1.77
45729112--45729265
53
2.9
54
84
1
193
35
16
25
22
1.94
45730120--45730164
14
3.3
14
78
6
56
35
0
15
48
1.45
45730746--45730805
29
2.1
29
90
0
93
41
28
0
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45730752--45730799
15
3.3
15
73
5
53
43
25
0
31
1.55
45731615--45731649
17
2.1
17
88
0
52
45
0
2
51
1.16
45733991--45734144
28
5.5
28
96
0
265
33
28
12
25
1.92
45733991--45734169
56
3.2
55
90
3
268
33
28
12
25
1.92
45745986--45746030
18
2.5
17
85
3
54
8
17
2
71
1.23
45749685--45749734
13
3.6
14
84
10
59
74
2
18
6
1.12
45749698--45749738
14
2.9
15
85
10
59
73
2
19
4
1.13
45749832--45749874
12
3.6
12
90
0
59
62
2
20
13
1.42
45749873--45749933
31
2.0
31
83
3
79
55
0
27
16
1.41
45752598--45752820
46
4.8
46
79
7
213
30
26
20
23
1.98
45754477--45754537
10
6.1
10
74
12
54
32
13
24
29
1.93
45754478--45754538
20
3.0
20
83
9
79
32
13
26
27
1.93
45756602--45756636
18
1.9
18
88
11
54
22
20
0
57
1.41
45756675--45756710
12
3.1
12
92
4
56
0
13
5
80
0.88
45762517--45762560
22
2.0
22
95
0
79
34
4
36
25
1.76
45764116--45764146
10
3.1
10
100
0
62
0
9
0
90
0.46
45764139--45764163
11
2.3
11
100
0
50
16
0
8
76
1.02
45764116--45764157
20
2.1
20
86
0
57
4
7
2
85
0.80
45764240--45764269
11
2.6
12
94
5
53
6
3
6
83
0.90
45765524--45765584
20
3.0
20
79
9
61
34
13
24
27
1.93
45768006--45768462
47
9.6
47
92
1
680
32
8
29
29
1.86
45769737--45769797
20
3.1
19
81
13
61
34
13
22
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45769741--45769797
10
5.6
10
75
4
51
31
14
24
29
1.94
45775290--45775368
29
2.7
29
100
0
158
27
32
20
18
1.96
45776751--45776783
16
2.1
16
100
0
66
33
6
24
36
1.80
45776757--45776807
16
3.2
16
83
5
50
23
3
27
45
1.70
45788931--45789117
49
3.8
48
80
9
225
26
19
25
28
1.98
45788917--45789112
99
2.0
101
92
3
333
25
19
26
28
1.99
45794019--45794116
30
3.3
30
72
4
90
27
26
16
29
1.97
45798300--45798487
49
3.8
49
81
5
243
27
19
25
28
1.99
45798295--45798482
100
1.9
100
96
0
349
26
20
25
28
1.99
45808535--45808706
93
1.8
93
94
0
308
28
29
20
21
1.98
45808528--45808703
46
3.8
46
76
12
198
29
28
20
21
1.98
45814151--45814187
4
9.0
4
88
5
56
24
0
0
75
0.80
45820176--45820238
21
3.0
21
90
2
90
30
1
33
34
1.67
45820177--45820238
10
5.9
10
76
10
61
30
1
32
35
1.68
45823231--45823264
10
3.3
10
91
4
50
76
8
0
14
1.01
45823231--45823265
11
3.3
11
96
4
63
77
8
0
14
0.99
45823216--45823284
21
3.3
21
76
6
61
81
4
7
7
0.99
45824315--45824434
6
19.0
6
67
19
50
73
2
15
8
1.18
45824328--45824434
6
16.5
6
68
20
56
74
2
14
7
1.15
45824389--45824426
13
2.8
13
82
17
51
73
0
18
7
1.06
45824328--45824427
13
7.7
13
68
21
50
75
2
15
8
1.13
45827848--45827912
20
3.2
20
77
0
67
23
21
16
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45827848--45827921
30
2.5
30
80
12
89
22
20
18
37
1.94
45829483--45829514
12
2.7
12
90
0
55
71
6
3
18
1.20
45829521--45829554
13
2.8
12
90
4
50
85
2
2
8
0.80
45829534--45829598
31
2.1
31
83
11
80
75
4
15
4
1.13
45831705--45831751
20
2.3
20
85
0
67
21
12
36
29
1.91
45833438--45833480
17
2.6
18
85
10
56
9
20
2
67
1.30
45835297--45835353
21
2.7
21
91
2
87
31
29
5
33
1.80
45835980--45836032
19
2.8
19
83
11
56
3
13
5
77
1.09
45837546--45837592
20
2.3
20
81
0
58
23
12
34
29
1.92
45848146--45848198
23
2.4
22
76
20
56
9
18
1
69
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343