genome.fa.s10.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  167  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55221060--55221200	48	2.9	48	82	0	183	31	20	24	22	1.98
55221075--55221255	48	3.8	48	81	0	191	30	21	23	24	1.99
55221060--55221252	96	2.0	96	82	0	233	30	21	24	23	1.99
55221451--55221627	48	3.7	48	84	3	239	25	17	29	27	1.97
55221444--55221713	48	5.8	47	74	11	150	27	17	27	27	1.98
55224451--55224531	42	2.0	42	85	4	112	13	35	25	24	1.92
55225462--55225627	46	3.6	45	75	10	158	23	29	19	27	1.98
55234730--55234873	49	2.9	49	83	4	191	27	27	19	25	1.99
55236064--55236168	53	2.0	53	83	3	131	20	23	20	36	1.95
55236087--55236270	55	3.4	54	74	5	165	19	22	20	38	1.94
55240707--55240825	27	4.4	27	83	0	139	33	17	21	27	1.96
55240707--55240837	54	2.4	54	85	0	172	32	19	20	28	1.97
55240705--55240837	27	5.0	26	74	17	87	32	18	20	28	1.96
55244545--55244659	49	2.5	47	85	7	155	25	28	20	25	1.99
55247921--55247959	20	2.0	20	85	10	53	35	17	0	46	1.49
55254290--55254470	48	3.8	48	75	1	148	30	21	23	24	1.99
55254670--55254841	48	3.6	48	87	0	218	26	15	30	28	1.96
55257750--55257806	28	2.0	28	100	0	114	54	7	10	28	1.60
55272993--55273028	16	2.2	17	90	5	56	58	19	2	19	1.52
55278890--55279114	40	5.7	40	85	5	278	24	22	28	25	2.00
55278890--55279147	80	3.2	80	82	7	224	25	21	27	24	1.99
55278890--55279147	119	2.2	119	79	6	265	25	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55286870--55287094	40	5.7	40	83	5	260	25	21	27	25	1.99
55286944--55287117	80	2.2	79	83	6	210	26	21	27	25	1.99
55291286--55291312	7	3.9	7	100	0	54	59	0	14	25	1.36
55302796--55302840	22	2.0	22	95	0	81	44	0	11	44	1.39
55310284--55310308	13	1.9	13	100	0	50	40	0	0	60	0.97
55310744--55310799	25	2.1	27	87	6	80	60	1	5	32	1.29
55312511--55312773	40	6.6	40	89	1	341	26	28	23	21	1.99
55312491--55312773	80	3.5	79	87	3	381	25	28	23	21	1.99
55312503--55312773	120	2.3	120	88	0	382	25	29	23	21	1.99
55319851--55319880	14	2.1	14	93	0	51	50	0	0	50	1.00
55338935--55339017	23	3.4	23	71	14	69	25	21	16	36	1.94
55345543--55345596	27	2.0	27	88	0	81	25	16	29	27	1.97
55354668--55354692	6	4.2	6	100	0	50	16	0	0	84	0.63
55355891--55355927	18	2.0	19	89	5	58	8	35	2	54	1.44
55359013--55359056	15	2.9	15	82	0	52	18	0	2	79	0.83
55362579--55362698	39	3.1	39	88	0	195	20	22	32	25	1.98
55364951--55365107	29	5.4	29	71	7	131	16	15	36	31	1.91
55364921--55365107	57	3.2	57	92	1	284	17	16	35	31	1.92
55368155--55368272	39	3.0	39	88	2	184	22	22	29	26	1.99
55369973--55370160	40	4.7	40	88	3	290	24	26	23	25	2.00
55369940--55370160	119	1.9	119	85	5	313	23	26	23	26	2.00
55376437--55376492	28	2.0	28	82	0	67	41	7	0	51	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55386289--55386428	27	5.2	28	88	5	175	35	22	24	18	1.96
55388048--55388157	26	4.2	26	95	2	177	36	24	4	34	1.76
55392875--55392914	21	1.9	21	84	0	53	15	25	27	32	1.95
55404614--55404756	51	2.9	50	81	3	171	29	25	19	25	1.99
55409797--55409943	41	3.6	41	92	0	222	35	26	18	19	1.95
55425038--55425138	27	3.7	27	81	9	116	30	15	15	37	1.90
55425457--55425491	18	1.9	18	88	0	52	22	17	17	42	1.88
55431040--55431104	26	2.5	26	87	0	94	30	13	27	27	1.94
55437485--55437543	28	2.1	28	90	0	91	42	6	15	35	1.73
55439688--55439902	67	3.3	65	72	11	188	32	16	27	22	1.96
55442455--55442603	26	5.7	26	68	15	85	30	10	22	36	1.88
55442483--55442643	78	2.1	78	98	0	313	32	13	20	33	1.91
55444286--55444423	50	2.7	50	93	3	224	38	14	15	31	1.87
55444258--55444433	50	3.5	50	84	6	221	36	13	14	34	1.86
55452895--55453033	27	5.2	26	83	7	154	37	21	23	17	1.94
55461023--55461198	46	3.8	46	78	10	187	22	21	27	28	1.99
55461020--55461190	93	1.8	93	89	0	270	23	21	26	28	1.99
55463153--55463264	27	4.2	26	86	10	145	35	23	25	16	1.94
55463153--55463264	54	2.1	54	88	6	165	35	23	25	16	1.94
55465517--55465671	43	3.7	43	79	5	154	27	16	22	34	1.95
55465562--55465671	41	2.6	42	84	5	134	25	14	23	36	1.93
55466256--55466318	32	2.0	32	100	0	126	36	6	19	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55469182--55469367	40	4.7	40	87	5	225	24	20	27	27	1.99
55469235--55469400	80	2.1	79	85	5	219	25	19	27	27	1.99
55471399--55471423	13	1.9	13	100	0	50	32	4	24	40	1.73
55473169--55473254	27	3.2	26	81	4	100	34	22	25	17	1.95
55475329--55475456	42	3.0	42	69	10	107	24	12	25	37	1.91
55481478--55481577	45	2.2	45	89	0	155	38	28	11	23	1.88
55500256--55500902	47	13.8	47	96	1	1100	31	8	29	29	1.88
55500256--55500866	330	1.9	329	96	0	1125	32	8	29	29	1.87
55500882--55500938	25	2.3	24	93	3	96	36	7	31	24	1.82
55501058--55501136	37	2.1	37	88	4	115	25	18	30	25	1.98
55503000--55503189	43	4.4	43	97	0	362	23	14	35	27	1.93
55503171--55503244	29	2.6	29	89	4	105	25	16	32	25	1.96
55503683--55503749	23	3.2	23	60	24	56	26	25	25	22	2.00
55503638--55503871	40	5.8	40	89	4	337	26	22	26	24	2.00
55507142--55507659	47	11.1	47	94	1	862	32	9	29	28	1.88
55507776--55507854	37	2.1	37	88	4	115	25	18	30	25	1.98
55511717--55511871	47	3.3	47	88	1	231	28	30	9	32	1.88
55524714--55524970	40	6.5	40	84	4	292	22	22	28	27	1.99
55524716--55524931	119	1.8	119	88	1	333	21	22	29	27	1.99
55529626--55529658	16	2.0	17	88	5	50	0	21	21	57	1.41
55531029--55531089	27	2.3	27	94	0	104	36	18	19	26	1.94
55543048--55543280	48	4.8	48	93	2	385	36	7	25	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55544656--55544839	40	4.7	40	83	6	216	25	27	22	25	2.00
55544656--55544839	78	2.3	80	81	9	216	25	27	22	25	2.00
55558518--55558693	56	3.1	56	99	0	343	44	9	23	22	1.81
55559823--55560046	79	2.8	79	84	5	283	24	21	27	25	1.99
55559823--55560046	40	5.7	40	85	6	278	24	21	27	25	1.99
55559862--55560079	79	2.8	79	82	5	219	26	20	27	25	1.99
55562952--55563148	27	7.3	27	90	0	259	25	20	17	36	1.94
55565403--55565539	24	5.6	24	71	6	89	27	16	29	26	1.97
55568657--55568726	27	2.6	26	95	2	95	31	28	12	27	1.93
55568657--55568754	28	3.5	28	90	2	135	31	28	13	26	1.94
55576294--55576379	24	3.5	24	77	3	91	26	17	27	27	1.98
55580554--55580681	29	4.5	28	88	2	175	32	25	12	28	1.92
55580553--55580681	57	2.3	57	87	2	188	32	26	12	28	1.92
55585326--55585379	27	2.0	26	85	3	72	38	18	20	22	1.93
55585383--55585552	27	6.3	27	82	2	198	25	22	17	34	1.96
55585383--55585552	54	3.1	54	86	1	234	25	22	17	34	1.96
55585398--55585551	81	1.9	81	86	0	218	24	21	18	35	1.96
55589716--55589833	39	3.0	39	89	0	191	26	31	22	19	1.98
55599410--55599786	47	7.9	47	91	1	583	32	8	29	29	1.86
55599410--55599786	143	2.6	142	91	3	582	32	8	29	29	1.86
55599410--55599786	190	2.0	190	91	0	619	32	8	29	29	1.86
55599905--55599983	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55602037--55602095	10	5.9	10	84	7	66	23	8	1	66	1.29
55605855--55605894	15	2.5	16	92	8	64	25	2	0	72	0.97
55606698--55606877	100	1.8	100	87	2	272	31	16	23	27	1.96
55606865--55606914	10	5.0	10	76	13	50	84	4	12	0	0.76
55606866--55606910	22	2.0	23	86	8	65	84	4	11	0	0.76
55607538--55607596	10	5.9	10	78	7	57	23	10	1	64	1.34
55609577--55609613	3	12.0	3	94	5	65	67	0	0	32	0.91
55612288--55612331	23	2.0	22	81	4	52	31	27	4	36	1.77
55614382--55614449	33	2.1	33	88	5	102	25	33	8	32	1.86
55616739--55616779	19	2.2	19	91	8	66	41	4	9	43	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343