Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  139  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46402740--46402772
16
2.1
16
94
0
57
6
33
6
54
1.50
46404179--46404356
27
6.6
27
82
6
180
29
28
15
26
1.96
46407315--46407425
27
4.2
26
79
8
116
17
24
22
36
1.95
46412648--46412702
20
2.8
20
88
0
83
25
29
16
29
1.97
46413036--46413229
45
4.3
45
89
0
280
41
15
19
24
1.89
46415708--46415751
21
2.0
22
86
4
63
34
34
6
25
1.82
46428325--46428368
22
2.0
22
95
0
79
25
36
4
34
1.76
46430435--46430485
15
3.3
15
76
13
50
78
5
11
3
1.06
46430422--46430485
30
2.1
30
82
5
76
78
4
12
4
1.07
46431488--46431581
18
5.4
18
77
7
95
69
3
19
8
1.29
46431487--46431622
12
11.5
12
71
16
72
69
2
19
8
1.25
46431585--46431642
13
4.3
13
73
16
55
70
1
18
8
1.21
46431639--46431701
33
1.9
33
84
12
85
53
6
26
12
1.62
46440479--46440525
20
2.3
20
85
0
67
29
36
12
21
1.91
46442268--46442312
20
2.2
20
88
7
65
80
4
6
8
1.03
46445489--46445535
20
2.3
20
85
0
67
29
36
12
21
1.91
46448095--46448200
48
2.2
47
85
9
135
59
1
24
14
1.45
46449868--46449914
20
2.3
20
85
0
67
29
36
12
21
1.91
46454445--46454483
11
3.7
10
86
10
51
5
7
2
84
0.84
46454457--46454483
10
2.7
10
100
0
54
7
7
0
85
0.75
46454436--46454498
24
2.6
24
80
5
65
6
14
3
76
1.11
46456033--46456079
20
2.3
20
81
0
58
23
12
34
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46461638--46461925
158
1.8
158
100
0
576
38
23
5
31
1.79
46467674--46467729
24
2.3
24
93
0
94
17
7
7
67
1.37
46467674--46467729
11
4.6
13
82
12
75
17
7
7
67
1.37
46472247--46472278
16
2.0
16
100
0
64
12
12
25
50
1.75
46472431--46472578
72
2.0
73
84
3
192
26
16
27
29
1.97
46473735--46473760
11
2.4
11
100
0
52
76
7
0
15
0.99
46476222--46476281
18
3.2
18
78
7
66
73
3
16
6
1.18
46478301--46478332
16
2.0
16
100
0
64
12
12
25
50
1.75
46478519--46478691
72
2.4
73
78
6
192
26
16
29
27
1.97
46482452--46482485
16
2.1
17
89
10
54
29
11
0
58
1.33
46487749--46487815
34
2.0
34
100
0
134
29
23
19
26
1.98
46493976--46494059
13
6.1
13
74
17
64
71
2
22
3
1.13
46494023--46494060
6
6.2
6
87
6
58
78
0
18
2
0.86
46494012--46494060
11
4.2
11
80
14
53
75
0
20
4
0.96
46496726--46496822
30
3.2
30
75
2
106
28
26
15
28
1.96
46498520--46498554
13
2.7
13
95
0
61
80
5
0
14
0.89
46499456--46499526
37
1.9
37
86
11
101
76
2
18
2
1.04
46499466--46499515
6
8.2
6
83
14
50
76
2
20
2
0.99
46499576--46499606
12
2.6
12
100
0
62
45
12
16
25
1.83
46501786--46501882
30
3.2
30
75
2
106
28
26
15
28
1.96
46504461--46504516
24
2.4
23
72
3
58
23
3
32
41
1.71
46507835--46507881
20
2.3
20
85
0
67
21
12
36
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46509548--46509653
48
2.2
48
85
9
137
14
24
1
59
1.45
46509629--46509696
18
3.6
18
70
14
55
17
27
2
51
1.60
46510792--46510826
11
3.2
11
83
0
52
17
8
2
71
1.23
46510747--46510811
32
2.1
30
83
13
78
4
15
4
75
1.13
46510804--46510860
12
4.4
12
79
16
69
19
3
5
71
1.19
46512348--46512394
20
2.3
20
85
0
67
21
12
36
29
1.91
46518620--46518681
10
5.9
10
74
10
52
33
32
3
30
1.74
46518620--46518682
21
3.0
21
88
2
90
33
33
3
30
1.74
46519368--46519407
16
2.4
18
80
16
50
15
25
5
55
1.60
46520128--46520174
20
2.3
20
85
0
67
29
36
12
21
1.91
46522308--46522363
24
2.4
23
75
3
67
21
3
32
42
1.70
46524761--46524805
12
3.5
13
81
9
56
15
6
2
75
1.11
46524758--46524805
25
1.9
25
87
8
71
18
8
2
70
1.22
46538598--46538654
12
4.8
12
89
2
71
15
7
3
73
1.18
46538600--46538654
24
2.3
24
90
0
83
12
7
3
76
1.12
46548018--46548082
20
3.3
19
73
16
51
38
16
21
23
1.93
46548889--46548945
11
5.5
10
73
22
55
77
1
17
3
1.00
46548889--46548945
5
11.0
5
77
17
55
77
1
17
3
1.00
46548889--46548945
16
3.7
14
80
17
60
77
1
17
3
1.00
46549007--46549088
30
2.7
31
81
5
96
65
1
21
10
1.30
46549012--46549081
24
2.9
24
74
6
61
62
1
24
11
1.36
46552338--46552368
15
2.1
14
94
5
53
67
9
6
16
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46554619--46554672
23
2.2
25
78
15
60
62
3
22
11
1.43
46561959--46562055
30
3.2
30
71
8
90
27
27
15
28
1.96
46562432--46562476
14
3.3
14
84
6
65
37
0
13
48
1.42
46562990--46563034
14
3.3
14
78
6
56
35
0
15
48
1.45
46562073--46563179
558
2.0
558
97
0
2108
28
15
18
37
1.91
46564016--46564063
15
3.3
15
73
5
53
43
27
0
29
1.55
46564010--46564069
29
2.1
29
90
0
93
41
28
0
30
1.56
46565220--46565269
18
2.8
18
87
0
73
58
0
28
14
1.37
46565213--46565294
24
3.4
24
79
0
92
59
0
28
12
1.33
46567987--46568083
30
3.2
30
75
2
97
28
27
15
27
1.96
46570639--46570701
21
3.0
21
88
2
90
30
3
33
33
1.74
46573787--46573835
9
5.2
9
83
16
64
10
2
4
83
0.85
46573787--46573829
8
4.9
8
86
13
50
9
2
2
86
0.76
46575146--46575198
9
5.7
9
85
14
72
9
1
3
84
0.81
46575146--46575198
28
1.9
27
96
3
97
9
1
3
84
0.81
46575146--46575199
17
2.9
17
89
10
72
11
1
3
83
0.85
46575550--46575597
14
3.4
14
85
0
60
43
6
31
18
1.75
46578403--46578464
10
5.9
10
74
10
52
33
32
3
30
1.74
46578403--46578465
21
3.0
21
88
2
90
33
33
3
30
1.74
46579390--46579455
33
2.0
33
84
0
87
25
16
30
27
1.97
46587254--46587281
10
2.8
10
100
0
56
17
0
7
75
1.03
46587667--46587706
14
2.9
14
92
0
62
52
7
30
10
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46589339--46589435
30
3.2
30
73
2
88
29
27
13
28
1.94
46592448--46592512
20
3.3
19
73
16
51
38
16
21
23
1.93
46594285--46594347
33
1.9
33
84
12
85
12
26
6
53
1.62
46594345--46594400
21
2.7
21
72
5
51
8
17
1
71
1.21
46594344--46594400
14
4.1
14
75
16
57
8
17
1
71
1.19
46594407--46594458
18
2.9
18
82
0
68
5
19
5
69
1.30
46594362--46594458
6
15.7
6
68
4
59
7
20
3
69
1.27
46597081--46597137
5
11.0
5
77
17
55
77
3
17
1
1.00
46597074--46597124
25
2.0
27
85
14
72
74
7
17
0
1.05
46597081--46597137
16
3.7
14
80
17
60
77
3
17
1
1.00
46597206--46597287
30
2.7
31
79
5
96
64
1
20
13
1.34
46599400--46599496
30
3.2
30
76
2
97
29
26
13
29
1.94
46601305--46601350
20
2.3
20
84
0
56
23
19
17
39
1.92
46601297--46601370
30
2.5
30
84
8
80
22
20
18
37
1.94
46605711--46605773
10
6.2
11
77
20
66
42
22
17
17
1.89
46605715--46605773
20
2.9
20
94
2
100
40
23
18
16
1.91
46608502--46608548
20
2.3
20
85
0
67
21
12
36
29
1.91
46610406--46610490
30
2.8
30
78
7
100
11
21
1
65
1.31
46610493--46610523
12
2.6
12
94
0
53
25
16
9
48
1.76
46610571--46610639
5
13.0
5
78
17
61
1
17
4
76
1.02
46610584--46610639
6
9.2
6
79
14
53
0
17
5
76
0.96
46610571--46610646
22
3.9
19
73
22
68
2
17
3
76
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46611862--46611928
20
3.2
20
67
29
59
35
14
8
40
1.78
46611833--46611938
42
2.5
42
96
1
194
33
12
13
40
1.81
46611840--46611909
22
3.3
22
66
28
60
35
11
14
38
1.82
46611858--46611923
22
3.1
22
65
30
61
34
16
10
37
1.83
46611921--46611965
14
3.3
14
84
6
65
37
0
13
48
1.42
46614765--46614861
30
3.2
30
71
8
90
27
15
28
27
1.96
46617376--46617420
14
3.3
14
78
6
56
35
0
15
48
1.45
46617603--46617657
20
2.8
20
88
0
83
25
29
16
29
1.97
46620271--46620367
30
3.2
30
72
8
99
28
16
26
27
1.97
46622499--46622529
12
2.6
12
100
0
62
25
16
12
45
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343