genome.fa.s10.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  150  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49796085--49796151	26	2.5	27	85	2	91	43	23	5	26	1.77
49796135--49796195	27	2.3	27	82	0	68	40	18	16	24	1.90
49800893--49800990	27	3.6	28	78	10	96	39	22	11	26	1.87
49800943--49800996	27	2.0	27	92	0	90	35	22	14	27	1.93
49800946--49801004	27	2.2	27	87	0	82	38	22	15	23	1.92
49802327--49802495	93	1.8	93	90	0	275	30	26	20	23	1.98
49802319--49802542	46	4.8	46	81	5	263	29	25	20	24	1.99
49805683--49805741	27	2.2	27	93	0	100	38	20	16	23	1.92
49806225--49806303	39	2.0	39	100	0	158	22	17	21	37	1.94
49808094--49808278	79	2.3	82	83	7	229	24	27	22	24	2.00
49808075--49808278	40	5.1	40	81	8	229	24	27	22	25	2.00
49816143--49816327	79	2.3	82	83	7	229	24	27	22	24	2.00
49816124--49816327	40	5.1	40	81	8	229	24	27	22	25	2.00
49821754--49821905	29	5.4	28	74	9	114	28	30	13	26	1.94
49828197--49828251	26	2.1	27	86	3	76	16	14	20	49	1.80
49828510--49828569	28	2.1	28	85	11	79	28	28	13	30	1.94
49836696--49836748	27	2.0	27	88	0	79	22	30	11	35	1.89
49851750--49851788	13	2.9	13	88	3	60	84	0	15	0	0.62
49858594--49858618	6	4.2	6	100	0	50	68	0	32	0	0.90
49862233--49862282	21	2.3	22	75	21	52	10	22	2	66	1.32
49867718--49867825	28	3.9	28	78	8	112	26	31	15	25	1.96
49867900--49867936	19	2.0	19	89	5	58	16	37	18	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49867909--49867945	19	1.9	19	88	0	56	16	35	18	29	1.93
49870720--49870998	141	2.0	141	96	0	513	26	11	23	38	1.89
49871065--49871131	30	2.2	30	97	0	125	28	11	16	43	1.83
49871079--49871135	18	3.5	18	64	26	54	31	15	14	38	1.87
49872563--49872661	27	3.7	27	87	4	130	28	10	22	39	1.86
49884082--49884341	81	3.2	82	78	4	258	40	23	8	28	1.83
49884076--49884341	27	9.9	27	79	4	198	39	23	8	28	1.83
49884334--49884409	27	2.9	27	80	2	91	35	18	22	23	1.96
49884761--49884819	22	2.7	22	78	5	57	22	25	22	30	1.99
49884977--49885040	27	2.4	27	81	5	76	17	20	25	37	1.93
49885184--49885303	6	19.3	6	68	19	68	20	15	13	50	1.78
49885184--49885294	31	3.5	31	88	1	141	20	16	12	50	1.77
49909980--49910238	68	3.9	64	75	13	206	24	28	15	30	1.96
49912090--49912262	27	6.4	27	85	2	222	23	20	20	35	1.96
49912090--49912262	54	3.2	54	86	3	258	23	20	20	35	1.96
49918851--49918910	27	2.3	26	85	2	75	35	20	23	21	1.96
49918949--49919000	27	2.0	26	84	3	68	32	19	28	19	1.96
49918878--49919019	67	2.1	68	85	5	187	30	21	28	19	1.98
49919654--49919822	27	6.3	27	81	2	117	24	17	20	38	1.93
49919654--49919826	54	3.2	54	81	3	213	24	17	19	38	1.93
49919672--49919825	81	1.9	81	84	5	204	23	16	20	39	1.92
49921254--49921426	27	6.3	27	81	9	183	39	20	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49921254--49921426	53	3.1	54	85	8	208	39	20	10	30	1.86
49921499--49921849	27	13.0	27	85	1	443	35	18	20	25	1.95
49922215--49922279	22	3.0	22	75	8	60	21	23	21	33	1.97
49922438--49922568	27	4.9	27	89	3	165	19	22	20	37	1.94
49922663--49922729	6	10.8	6	78	12	73	17	19	14	47	1.82
49922666--49922729	25	2.6	25	92	0	101	17	20	15	46	1.83
49923474--49923512	21	1.9	20	89	5	60	46	20	0	33	1.51
49931361--49931426	27	2.4	27	80	5	80	30	21	24	24	1.99
49955664--49955841	27	6.6	27	84	3	205	29	28	15	26	1.96
49955685--49955840	82	1.9	81	88	3	233	29	28	15	26	1.96
49966180--49966383	40	5.3	40	80	8	208	24	21	27	26	1.99
49966205--49966345	39	3.7	37	84	6	169	24	21	26	26	1.99
49966180--49966366	79	2.4	75	84	4	230	24	21	27	26	1.99
49973691--49973833	77	1.9	77	83	2	189	36	24	17	21	1.95
49976561--49976820	27	9.6	27	76	8	183	40	23	8	28	1.83
49976561--49976823	54	4.9	55	75	5	207	39	23	8	28	1.84
49976561--49976823	81	3.2	82	76	6	250	39	23	8	28	1.84
49976813--49976919	27	4.0	27	81	0	124	34	19	21	24	1.96
49976803--49976920	54	2.2	54	83	6	157	37	17	19	25	1.94
49977267--49977325	22	2.7	22	81	5	66	20	27	22	30	1.98
49977483--49977546	27	2.4	27	84	5	85	17	21	25	35	1.95
49977690--49977809	6	19.3	6	69	19	77	20	15	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49977690--49977800	31	3.5	31	91	1	150	19	16	13	50	1.78
49997489--49997542	27	2.0	27	85	3	74	25	37	16	20	1.93
49997746--49997997	43	5.9	42	88	2	342	32	32	22	11	1.91
50007840--50008098	68	3.9	64	75	13	206	24	28	15	30	1.96
50017553--50017730	27	6.6	27	85	3	205	29	29	14	26	1.95
50017553--50017730	54	3.3	54	85	3	232	29	29	14	26	1.95
50017574--50017729	81	1.9	82	88	3	235	29	29	14	26	1.95
50021672--50021742	37	1.9	37	97	0	133	26	26	18	28	1.98
50026337--50026561	96	2.4	96	86	2	301	36	27	15	21	1.93
50026318--50026559	48	5.1	48	81	3	272	34	28	16	20	1.94
50027754--50028013	27	9.6	27	86	2	267	40	20	9	30	1.84
50027754--50028016	109	2.4	108	81	6	293	39	20	9	30	1.85
50028001--50028431	27	16.0	27	79	5	372	39	18	17	25	1.91
50027945--50028390	108	4.1	107	80	4	342	40	18	15	26	1.89
50027998--50028434	54	8.1	54	85	1	491	39	18	16	25	1.91
50027972--50028407	81	5.4	80	80	6	448	40	18	15	25	1.90
50028557--50028599	11	4.0	11	75	6	52	34	13	20	30	1.92
50028559--50028607	21	2.3	21	89	0	80	34	10	20	34	1.86
50028656--50028725	25	2.8	25	91	0	113	27	22	21	28	1.99
50032197--50032354	40	4.0	40	83	3	210	28	26	21	23	1.99
50032197--50032354	80	2.0	80	89	2	246	28	26	21	23	1.99
50034769--50034937	27	6.4	27	81	6	195	24	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50034769--50034937	54	3.2	53	83	5	218	24	20	19	36	1.95
50039243--50039276	16	2.1	16	100	0	68	41	29	11	17	1.85
50044380--50044492	27	4.2	26	78	10	111	38	19	22	20	1.94
50044380--50044492	54	2.1	54	83	3	138	38	19	22	20	1.94
50053321--50053492	6	27.8	6	73	16	129	48	13	18	19	1.81
50053321--50053492	25	7.0	24	75	12	129	48	13	18	19	1.81
50053332--50053489	19	7.8	19	69	21	99	47	14	18	18	1.83
50053323--50053408	37	2.3	37	85	0	118	47	15	18	18	1.82
50053327--50053491	62	2.7	62	94	0	285	48	13	18	18	1.81
50053389--50053461	37	2.0	37	86	0	101	49	13	17	19	1.80
50053610--50053675	27	2.5	26	85	7	87	37	22	22	16	1.93
50053610--50053683	27	2.8	27	78	13	82	36	21	24	17	1.95
50053813--50053864	27	1.9	27	84	7	70	36	13	23	26	1.92
50053848--50053906	22	2.7	22	81	0	64	32	22	25	20	1.98
50053994--50054076	27	3.1	26	86	5	112	37	21	21	19	1.94
50054275--50054470	27	7.3	27	80	1	178	27	19	16	35	1.94
50054277--50054461	81	2.3	82	83	3	223	27	20	16	36	1.94
50054475--50054721	81	3.0	80	85	5	320	41	10	20	27	1.85
50054475--50054724	27	9.3	27	79	6	256	41	10	20	27	1.85
50056734--50056872	17	8.3	17	76	21	118	51	11	17	19	1.76
50056734--50056872	6	24.8	6	77	16	131	51	11	17	19	1.76
50056734--50056872	11	12.4	12	77	17	131	51	11	17	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50056717--50056872	50	3.2	49	82	12	162	50	12	17	19	1.77
50056987--50057052	27	2.5	26	85	7	87	37	22	22	16	1.93
50056987--50057060	27	2.8	27	78	13	82	36	21	24	17	1.95
50057011--50057068	27	2.1	27	84	6	73	36	27	20	15	1.93
50057225--50057283	22	2.7	22	81	0	64	32	22	25	20	1.98
50057371--50057453	27	3.1	26	87	5	112	37	21	21	19	1.94
50057651--50057841	26	7.3	27	82	5	203	26	18	17	36	1.94
50057653--50057841	79	2.4	79	84	4	240	26	19	16	37	1.93
50057651--50057841	52	3.6	53	82	5	228	26	18	17	36	1.94
50057846--50058086	27	9.2	27	83	11	306	40	10	21	26	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343