Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  338  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108206661--108207004
172
2.0
172
98
0
661
32
22
20
23
1.98
108207908--108207956
26
1.9
26
83
4
64
22
12
12
53
1.71
108210415--108210485
31
2.3
31
77
18
76
36
12
12
38
1.82
108213459--108213490
14
2.4
14
94
5
57
40
6
6
46
1.54
108218222--108218261
16
2.5
17
76
15
50
57
0
5
37
1.21
108219842--108220126
139
2.1
139
81
4
324
38
17
15
28
1.90
108220856--108220901
23
2.0
23
84
16
60
43
0
4
52
1.21
108227935--108227964
13
2.3
13
94
0
51
46
0
10
43
1.37
108231618--108231681
30
2.1
30
85
5
85
35
6
26
31
1.81
108232006--108232189
78
2.4
77
95
1
332
20
17
28
33
1.96
108232163--108232214
26
2.0
26
96
0
95
13
23
34
28
1.92
108232087--108232350
103
2.6
103
92
2
449
18
20
30
30
1.97
108232267--108232318
26
2.0
26
96
0
95
13
23
34
28
1.92
108241570--108241840
107
2.5
105
81
11
338
19
21
29
29
1.98
108249052--108249223
74
2.3
75
94
3
303
18
19
28
33
1.95
108249125--108249380
97
2.6
99
90
6
394
19
20
30
30
1.97
108249296--108249347
27
1.9
27
96
0
95
13
25
32
28
1.93
108253566--108253811
126
2.0
126
89
0
375
28
15
19
36
1.93
108253866--108253934
31
2.4
30
81
16
83
46
23
0
30
1.53
108257670--108257710
16
2.6
16
96
0
73
36
9
12
41
1.76
108260931--108261031
49
2.0
50
86
5
143
46
6
8
37
1.62
108262539--108262574
16
2.2
16
90
9
56
0
44
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108263098--108263131
17
2.0
17
94
0
59
32
0
0
67
0.91
108263095--108263131
14
2.6
15
83
8
51
29
0
0
70
0.88
108263510--108263549
21
1.9
21
85
10
55
30
10
7
52
1.62
108267739--108267855
59
2.0
59
89
1
182
30
26
9
33
1.88
108271745--108271917
64
2.8
62
89
6
251
52
13
16
17
1.76
108277005--108277054
21
2.3
21
83
10
57
58
8
6
28
1.51
108283471--108283556
9
9.6
9
83
5
93
44
19
9
26
1.81
108283471--108283556
18
4.8
18
83
0
109
44
19
9
26
1.81
108283576--108283616
6
6.5
6
83
10
55
17
0
4
78
0.93
108288542--108288584
3
14.3
3
100
0
86
67
0
0
32
0.91
108289110--108289151
20
2.2
19
87
8
59
64
0
33
2
1.07
108289560--108289594
18
2.0
18
94
5
63
68
2
5
22
1.24
108289561--108289598
18
2.2
18
90
4
60
73
2
5
18
1.14
108290344--108290381
11
3.3
11
86
13
58
34
0
0
65
0.93
108290343--108290381
13
3.2
12
86
13
62
33
0
0
66
0.92
108295509--108295685
50
3.5
50
90
2
275
35
16
22
25
1.94
108295661--108295801
31
4.5
31
92
0
228
26
19
29
24
1.99
108295835--108295967
47
2.8
47
89
0
194
32
13
23
30
1.93
108295963--108296068
49
2.2
49
91
3
169
27
13
27
32
1.94
108295975--108296138
42
3.7
43
79
9
154
28
12
27
31
1.93
108298010--108298205
95
2.0
99
91
4
319
15
14
5
64
1.45
108298040--108298228
95
2.0
94
80
6
211
20
12
6
60
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108298335--108298407
38
1.9
38
94
0
128
26
19
10
43
1.83
108303145--108303205
30
2.0
30
96
0
113
13
9
26
50
1.72
108307482--108307511
11
2.6
11
94
5
51
10
6
3
80
1.01
108314614--108314654
21
2.0
21
90
0
64
29
21
29
19
1.98
108323110--108323477
132
2.8
132
79
5
354
35
19
16
28
1.94
108328753--108328789
15
2.4
16
90
4
58
45
0
0
54
1.00
108330838--108330964
7
17.7
7
78
4
74
21
0
33
44
1.52
108330838--108330944
15
7.4
15
81
9
89
21
0
36
42
1.53
108330835--108330908
22
3.4
22
78
9
80
22
0
32
44
1.53
108330838--108330964
14
8.9
14
78
6
94
21
0
33
44
1.52
108331605--108331712
7
15.4
7
73
12
53
44
34
0
20
1.58
108331600--108331712
21
5.3
21
71
8
77
43
34
0
21
1.59
108331978--108332229
115
2.2
115
86
2
355
32
18
14
34
1.91
108332346--108332488
62
2.3
61
81
10
173
19
32
4
43
1.70
108333542--108333659
38
2.9
43
80
12
174
33
9
10
47
1.69
108338591--108338645
26
2.1
26
96
0
101
20
14
14
50
1.77
108342080--108342117
12
3.2
12
88
3
60
50
0
0
50
1.00
108342309--108342349
3
13.3
3
84
5
55
29
0
4
65
1.13
108346741--108346811
27
2.7
26
80
14
74
38
1
0
60
1.06
108349971--108350020
20
2.5
21
72
18
52
56
4
6
34
1.43
108357920--108357946
14
1.9
14
100
0
54
44
7
11
37
1.68
108367548--108367622
18
4.2
18
84
0
96
33
13
22
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108373532--108373572
21
2.0
21
81
18
50
21
26
19
31
1.97
108380783--108381301
189
2.7
189
91
0
840
30
19
19
31
1.96
108382265--108382303
20
1.9
21
84
5
53
17
17
5
58
1.56
108385486--108385555
33
2.1
33
86
0
95
20
40
4
35
1.72
108388599--108388660
27
2.3
26
76
13
63
38
1
11
48
1.49
108397808--108397878
3
23.7
3
88
5
108
63
0
32
4
1.14
108397807--108397893
18
4.7
18
84
8
111
59
0
31
9
1.28
108397808--108397893
15
5.7
15
88
0
109
60
0
31
8
1.26
108397965--108398000
9
4.0
9
92
0
63
41
13
22
22
1.89
108397966--108398004
18
2.2
18
100
0
78
38
17
20
23
1.93
108402356--108402412
28
2.0
28
93
0
96
36
5
19
38
1.74
108403187--108403236
17
2.7
20
78
18
70
10
0
44
46
1.37
108407815--108407864
17
2.7
20
78
18
70
10
0
44
46
1.37
108411473--108411504
11
2.9
11
100
0
64
46
0
28
25
1.53
108418413--108418447
16
2.1
17
89
5
54
31
2
2
62
1.24
108425195--108425254
29
2.1
29
96
0
111
21
25
13
40
1.89
108430336--108430372
18
2.1
18
100
0
74
29
16
27
27
1.97
108440454--108440500
22
2.1
22
84
7
60
51
6
6
36
1.53
108443081--108443120
21
1.9
21
100
0
80
37
17
15
30
1.90
108443793--108443835
22
2.0
22
85
0
59
65
6
4
23
1.37
108445296--108445373
40
2.0
40
86
0
111
15
35
19
29
1.92
108448176--108448592
138
3.0
135
82
4
467
23
22
18
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108448176--108448592
207
2.0
207
80
0
467
23
22
18
35
1.96
108448183--108448592
69
5.9
69
79
1
381
22
22
19
35
1.96
108456243--108456307
21
3.2
21
74
12
82
13
26
20
40
1.89
108456225--108456319
39
2.4
39
92
0
154
14
25
22
37
1.92
108459915--108459947
15
2.2
15
89
10
50
6
24
6
63
1.40
108460233--108460276
3
14.7
3
100
0
88
31
0
0
68
0.90
108464607--108464638
3
10.7
3
100
0
64
31
0
0
68
0.90
108464639--108464824
73
2.5
73
99
0
363
27
6
24
40
1.80
108467987--108468013
13
2.1
13
100
0
54
66
0
7
25
1.17
108470343--108470377
16
2.1
17
89
5
54
31
2
2
62
1.24
108470663--108470695
16
2.1
16
100
0
66
24
6
6
63
1.40
108478384--108478432
23
2.1
23
92
0
80
30
6
44
18
1.74
108479796--108479864
28
2.6
26
84
9
77
42
1
0
56
1.08
108480662--108480818
51
3.1
51
96
1
280
15
31
7
45
1.72
108482428--108482516
27
3.0
30
85
9
121
26
22
6
43
1.78
108484588--108484768
72
2.5
74
84
4
224
32
34
13
19
1.91
108484757--108484795
18
2.2
18
95
0
69
48
17
25
7
1.74
108484892--108484960
16
4.2
16
94
3
120
26
0
36
37
1.57
108484892--108484960
33
2.1
32
94
2
120
26
0
36
37
1.57
108484941--108485031
45
2.0
45
85
2
121
27
6
28
37
1.82
108485176--108485230
15
3.4
16
80
16
53
54
1
0
43
1.10
108485182--108485230
16
2.9
18
80
20
61
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108485352--108485386
18
2.0
17
88
5
52
54
0
0
45
0.99
108485090--108485410
156
2.1
156
96
0
588
43
3
6
47
1.44
108485276--108485534
137
1.9
138
90
0
412
44
3
4
47
1.41
108485290--108485568
137
2.0
136
81
5
321
45
5
3
45
1.45
108488137--108488192
21
2.6
21
91
2
85
41
25
12
21
1.88
108489263--108489396
33
4.2
33
77
12
163
61
11
17
8
1.56
108489283--108489368
15
5.7
15
65
13
50
65
12
15
6
1.46
108489329--108489381
18
3.1
18
73
15
67
62
13
15
9
1.54
108490927--108490951
2
12.5
2
100
0
50
48
0
0
52
1.00
108498454--108498681
46
5.0
46
91
0
339
23
23
14
38
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343