genome.fa.s10.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  108  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36301319--36301750	96	4.5	97	95	2	664	31	9	31	28	1.88
36301316--36301750	143	3.0	143	91	2	676	31	9	31	28	1.88
36307295--36307465	93	1.8	93	89	2	272	28	26	21	22	1.99
36307294--36307462	46	3.7	46	74	12	166	28	26	21	23	1.99
36307869--36307928	30	2.0	30	86	0	84	30	25	6	38	1.81
36312353--36312524	67	2.6	66	81	7	170	31	16	29	22	1.96
36312377--36312560	67	2.8	64	78	8	203	28	16	30	23	1.96
36319035--36319097	33	1.9	33	90	0	99	17	22	12	47	1.81
36319040--36319132	33	2.8	32	83	3	96	20	18	13	47	1.82
36319270--36319500	109	2.1	109	82	1	275	24	25	12	37	1.91
36321963--36321992	15	1.9	16	93	6	53	43	0	0	56	0.99
36324101--36324136	17	2.1	17	94	0	63	36	11	5	47	1.63
36325974--36326028	24	2.3	24	78	6	58	16	27	20	36	1.93
36326011--36326069	25	2.4	25	81	13	68	22	18	22	37	1.94
36326119--36326173	25	2.2	25	77	6	58	21	25	23	29	1.99
36329097--36329292	40	4.9	40	93	1	324	30	26	21	22	1.99
36330669--36330694	13	2.0	13	100	0	52	61	7	0	30	1.24
36337189--36337353	79	2.1	79	90	2	260	28	26	22	22	1.99
36337189--36337353	40	4.2	40	91	2	262	28	26	22	22	1.99
36338728--36338753	13	2.0	13	100	0	52	61	7	0	30	1.24
36341492--36341581	29	3.1	29	91	1	137	31	28	12	27	1.93
36348468--36348631	24	6.7	24	73	6	114	19	25	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36349228--36349267	21	1.9	21	85	10	55	35	0	27	37	1.57
36362297--36362558	40	6.6	40	93	1	438	23	22	25	28	1.99
36390465--36390527	16	4.1	16	80	12	78	55	3	0	41	1.16
36390469--36390528	8	7.6	8	71	17	54	53	3	0	43	1.17
36390663--36390708	21	2.2	21	88	7	67	34	0	34	30	1.58
36390669--36390714	14	3.3	14	82	11	58	39	0	30	30	1.57
36390676--36390754	7	11.4	7	76	2	52	44	2	25	27	1.67
36394105--36394163	26	2.3	27	82	8	77	16	23	20	38	1.92
36394213--36394286	24	3.1	25	82	5	100	17	22	18	40	1.91
36404513--36404582	21	3.2	21	66	18	61	21	12	25	40	1.89
36408473--36408583	40	2.8	39	87	4	159	22	23	26	27	1.99
36411749--36411785	20	1.9	19	89	10	58	51	16	27	5	1.66
36415203--36415232	13	2.3	13	100	0	60	40	16	6	36	1.75
36415307--36415409	50	2.1	50	96	0	188	36	19	6	36	1.78
36415483--36415643	43	3.7	43	73	9	114	31	23	19	25	1.98
36423716--36423875	24	6.6	23	71	13	115	31	30	13	23	1.93
36423716--36423875	50	3.3	48	73	12	119	31	30	13	23	1.93
36425813--36426037	40	5.7	40	83	5	251	25	28	21	24	1.99
36425815--36426037	119	1.9	120	82	6	283	25	27	21	25	1.99
36432578--36432602	8	3.1	8	100	0	50	12	0	0	88	0.53
36439417--36439517	42	2.4	42	81	1	112	35	24	15	23	1.94
36439447--36439548	42	2.4	43	81	6	109	34	27	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36439407--36439548	43	3.3	43	75	10	130	34	26	16	22	1.95
36452269--36452442	46	3.8	46	75	13	176	21	19	28	29	1.98
36460052--36460138	45	1.9	45	90	0	138	21	11	24	42	1.86
36463556--36463669	45	2.5	45	88	0	174	21	17	28	32	1.96
36466472--36466672	108	1.8	110	85	4	282	22	25	18	32	1.97
36466425--36466679	55	4.8	52	77	8	223	21	25	17	34	1.95
36467892--36467916	12	2.1	12	100	0	50	40	16	28	16	1.89
36477031--36477080	23	2.2	23	82	13	59	42	22	14	22	1.88
36477143--36477204	26	2.3	26	86	2	88	20	22	17	38	1.93
36477143--36477228	27	3.2	27	86	1	111	22	18	18	40	1.91
36477185--36477241	27	2.1	27	80	6	62	26	12	22	38	1.89
36477225--36477344	27	4.4	27	82	0	141	40	15	12	31	1.85
36477225--36477553	54	6.3	54	81	8	376	37	14	14	32	1.87
36477225--36477553	81	4.2	80	80	9	365	37	14	14	32	1.87
36477330--36477359	15	2.0	15	100	0	60	26	20	6	46	1.75
36477345--36477553	27	7.7	27	87	0	310	36	14	15	33	1.88
36477225--36477494	150	1.8	150	88	0	414	37	14	13	33	1.86
36478502--36478526	13	1.9	13	100	0	50	56	8	32	4	1.47
36480469--36480555	37	2.4	37	82	5	97	37	26	13	21	1.91
36481955--36481995	21	2.0	20	90	4	64	29	0	21	48	1.50
36487953--36488146	43	4.5	43	92	0	307	30	32	24	11	1.91
36506486--36506526	21	2.0	20	85	4	55	29	0	19	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36514337--36514608	92	2.9	91	78	11	268	24	28	18	27	1.98
36514384--36514609	44	4.9	45	76	11	192	24	29	18	27	1.98
36514426--36514596	94	1.8	92	87	7	256	24	30	18	26	1.98
36528706--36528730	13	1.9	13	100	0	50	64	8	0	28	1.22
36531129--36531168	19	2.0	20	95	4	73	0	22	5	72	1.04
36532061--36532146	43	2.0	43	97	0	163	52	10	18	18	1.73
36533376--36533400	13	1.9	13	100	0	50	64	8	0	28	1.22
36541078--36541128	13	3.9	13	77	10	59	31	5	25	37	1.80
36546830--36546915	27	3.2	26	86	4	118	37	23	22	17	1.94
36549143--36549321	43	4.2	43	86	2	137	35	25	13	25	1.93
36549123--36549320	86	2.3	87	80	3	213	34	24	13	27	1.93
36556896--36557062	43	3.9	43	91	0	271	35	25	13	26	1.92
36558406--36558437	12	2.7	12	95	0	55	0	50	0	50	1.00
36561177--36561214	19	2.0	19	94	0	67	47	13	10	28	1.76
36561219--36561254	14	2.5	14	90	4	54	41	13	13	30	1.84
36561508--36561669	43	3.8	43	84	2	209	33	24	14	27	1.94
36578467--36578687	40	5.6	40	84	6	272	27	28	21	22	1.99
36578467--36578687	80	2.8	79	87	4	311	27	28	21	22	1.99
36586942--36587122	40	4.6	40	86	5	244	25	29	22	22	1.99
36586942--36587122	80	2.3	79	92	1	292	25	29	22	22	1.99
36587020--36587139	39	3.1	38	76	10	100	25	30	22	21	1.99
36593615--36593639	8	3.1	8	100	0	50	40	12	12	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36593649--36593865	114	1.9	114	97	0	407	43	14	11	30	1.80
36597631--36597680	15	3.4	16	81	10	54	60	10	18	12	1.59
36597640--36597680	15	2.7	15	88	0	64	58	9	19	12	1.61
36600552--36600730	46	3.8	49	79	14	200	28	28	21	21	1.99
36600559--36600730	93	1.8	93	91	2	283	27	28	21	22	1.99
36603050--36603197	51	2.9	51	89	2	226	29	13	27	29	1.94
36608469--36608594	39	3.2	39	89	0	189	22	19	28	29	1.98
36608469--36608632	39	4.2	39	83	0	186	22	20	28	28	1.99
36616144--36616456	38	8.2	38	87	1	394	32	24	19	22	1.97
36616167--36616456	114	2.5	114	90	0	445	32	24	21	22	1.98
36619116--36619163	25	1.9	25	86	0	69	33	25	14	27	1.94
36619202--36619278	9	7.9	9	72	16	64	35	7	22	35	1.83
36619211--36619282	11	7.1	11	70	17	57	36	11	20	31	1.88
36619200--36619282	20	4.2	20	93	0	148	36	10	20	32	1.87
36619335--36619477	23	6.0	24	89	8	204	30	20	20	27	1.98
36619670--36619733	31	2.1	31	90	0	101	35	15	23	25	1.94
36621759--36621866	48	2.2	47	82	8	128	21	25	19	33	1.97
36623246--36623475	114	2.0	113	86	0	316	32	24	20	22	1.98
36623272--36623475	38	5.4	38	87	0	291	32	25	20	22	1.97
36645199--36645837	47	13.6	47	94	2	1084	32	8	29	29	1.87
36645199--36645837	189	3.4	189	95	1	1115	32	8	29	29	1.87
36645199--36645837	236	2.7	238	95	2	1139	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36647968--36648042	38	2.0	38	86	5	107	30	18	26	24	1.98
36648096--36648375	40	7.1	40	90	1	411	24	22	28	24	2.00
36648096--36648375	119	2.3	120	88	1	420	24	22	28	24	2.00
36651794--36652246	47	9.6	47	93	1	753	32	8	29	29	1.87
36651794--36652246	96	4.8	94	93	2	753	32	8	29	29	1.87
36651794--36652246	143	3.2	143	94	0	775	32	8	29	29	1.87
36654009--36654121	41	2.7	40	80	10	111	28	27	17	26	1.98
36665514--36665755	43	5.7	43	72	8	154	26	18	23	31	1.97
36665509--36665760	85	3.0	84	85	4	310	25	18	23	32	1.97
36671035--36671206	44	3.7	47	78	10	167	23	29	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343