genome.fa.s10.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  121  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40592853--40593015	55	2.9	55	85	4	186	27	11	26	33	1.91
40598718--40598898	40	4.6	40	79	9	158	24	19	28	27	1.99
40598718--40598895	80	2.2	81	81	10	199	24	20	28	26	1.99
40606496--40606678	40	4.6	39	82	8	192	24	20	27	27	1.99
40606496--40606675	79	2.3	81	83	8	219	23	21	27	27	1.99
40606549--40606714	79	2.1	78	83	3	199	25	20	27	26	1.99
40611863--40612013	28	5.4	28	92	1	223	25	11	28	33	1.92
40620792--40620997	40	5.2	40	92	1	308	22	21	27	28	1.99
40623997--40624093	51	1.9	51	87	4	142	34	13	25	26	1.93
40629439--40629482	16	2.8	16	85	0	52	50	18	20	11	1.77
40629693--40629807	29	4.0	28	82	8	133	27	16	28	26	1.97
40641099--40641148	18	2.8	18	77	14	59	42	10	16	32	1.81
40642581--40642627	19	2.5	20	75	10	53	8	29	2	59	1.39
40643856--40643985	27	4.9	26	85	7	138	40	19	9	30	1.83
40643857--40643986	53	2.4	55	83	6	169	40	20	9	30	1.83
40644851--40644889	16	2.4	16	95	0	69	43	17	15	23	1.87
40645737--40645834	29	3.4	29	83	6	119	26	17	28	27	1.98
40653690--40653773	27	3.1	27	81	5	82	38	23	8	29	1.84
40653701--40653779	27	2.9	27	88	0	104	39	20	8	31	1.83
40653728--40653787	27	2.2	27	93	0	102	41	16	13	28	1.86
40654146--40654205	22	2.7	22	79	7	68	23	25	21	30	1.99
40657970--40658099	27	4.9	26	85	7	138	40	19	9	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40657971--40658100	53	2.4	55	83	6	169	40	20	9	30	1.83
40661453--40661538	43	2.0	43	88	0	127	47	2	22	27	1.63
40663469--40663601	53	2.7	52	81	8	143	30	27	18	24	1.98
40666262--40666327	33	2.0	33	96	0	123	21	10	33	34	1.88
40673236--40673302	33	2.0	33	94	0	116	41	22	5	29	1.77
40673751--40673824	28	2.6	28	91	0	112	29	28	16	25	1.97
40673805--40673897	40	2.3	40	81	3	107	32	24	16	26	1.96
40676681--40676795	44	2.7	41	80	9	131	32	26	17	23	1.97
40682201--40682385	79	2.3	82	83	7	229	24	27	22	24	2.00
40682182--40682385	40	5.1	40	81	8	229	24	27	22	25	2.00
40690056--40690182	38	3.3	40	84	7	147	24	27	22	25	2.00
40690056--40690226	39	4.4	40	79	10	169	24	26	21	26	1.99
40690081--40690188	38	2.8	39	87	7	148	25	26	19	27	1.99
40691997--40692213	40	5.5	40	91	3	316	24	23	27	24	2.00
40691993--40692213	119	1.9	119	87	5	331	25	22	27	24	2.00
40700073--40700300	40	5.7	40	92	4	372	25	21	27	25	2.00
40704521--40704586	30	2.2	30	91	0	105	25	33	21	19	1.97
40706334--40706376	22	2.0	22	100	0	86	46	23	4	25	1.71
40717143--40717306	40	4.1	40	92	0	258	28	27	20	23	1.99
40720998--40721156	43	3.7	42	77	10	144	26	17	23	32	1.97
40742758--40742796	18	2.1	19	85	4	53	7	23	2	66	1.30
40742790--40742856	30	2.2	30	83	0	80	11	23	0	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40742814--40742865	18	2.9	18	82	0	59	13	19	1	65	1.36
40742832--40742856	12	2.1	12	100	0	50	8	16	0	76	1.02
40742858--40742890	13	2.6	13	95	4	59	27	15	12	45	1.81
40742936--40742994	5	11.4	5	73	20	50	3	18	1	76	1.02
40742936--40742994	16	3.8	15	78	14	57	3	18	1	76	1.02
40742937--40742983	15	3.1	14	85	11	58	4	17	2	76	1.04
40742956--40742999	20	2.2	20	88	12	63	0	18	4	77	0.94
40773449--40773492	22	2.0	22	95	0	79	36	25	11	27	1.90
40776718--40776873	43	3.7	42	82	8	181	25	16	25	33	1.96
40777058--40777095	18	2.1	19	90	5	60	50	0	15	34	1.45
40782747--40782793	18	2.6	18	82	0	58	17	23	14	44	1.85
40782783--40782873	40	2.3	40	79	9	105	31	21	18	27	1.97
40784213--40784245	18	1.9	17	88	11	50	30	15	12	42	1.83
40784927--40785022	34	2.9	33	77	13	99	30	25	20	23	1.99
40792556--40792685	66	1.9	68	84	10	176	34	16	29	20	1.94
40794294--40794358	28	2.3	28	86	0	94	38	9	23	29	1.85
40794431--40794682	39	6.5	39	91	0	389	19	22	28	29	1.98
40796814--40796911	28	3.5	28	95	1	171	32	28	12	26	1.92
40801670--40801752	29	2.9	29	92	0	139	25	27	18	28	1.98
40808063--40808251	41	4.7	40	79	10	181	19	28	16	36	1.93
40822481--40822612	47	2.8	48	88	3	196	34	28	14	22	1.93
40822484--40822612	48	2.7	47	89	3	188	34	28	13	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40823068--40823117	25	2.0	25	96	0	91	50	18	4	28	1.65
40825373--40825731	49	7.4	49	96	1	658	33	7	28	30	1.85
40825857--40825935	37	2.1	37	90	0	122	24	18	31	25	1.98
40827149--40827407	40	6.5	40	93	0	430	24	19	27	27	1.99
40829614--40829638	13	1.9	13	100	0	50	32	16	16	36	1.90
40831334--40831946	49	12.7	49	96	2	1084	32	8	29	29	1.87
40831334--40831946	194	3.2	194	96	1	1099	32	8	29	29	1.87
40832063--40832141	37	2.1	37	88	0	113	25	18	30	25	1.98
40832529--40832559	9	3.4	9	95	0	53	0	25	16	58	1.38
40835519--40835741	43	5.2	43	88	4	333	29	28	17	25	1.97
40839322--40839477	40	3.9	40	88	1	224	30	25	13	30	1.94
40840566--40840625	30	2.0	30	96	0	111	23	25	20	31	1.98
40846319--40846522	40	5.1	40	78	8	202	26	26	22	24	2.00
40854340--40854517	40	4.6	39	78	14	158	26	28	20	24	1.99
40870384--40870561	27	6.6	27	83	3	205	26	15	28	29	1.96
40870385--40870540	82	1.9	81	88	3	233	26	15	28	29	1.96
40870381--40870561	82	2.2	81	83	2	229	27	15	27	29	1.96
40872613--40872667	23	2.3	23	93	3	92	16	10	3	69	1.32
40875928--40876082	28	5.5	28	76	3	141	19	22	16	41	1.90
40875951--40876084	56	2.4	56	86	5	189	18	25	16	39	1.91
40880879--40880945	28	2.4	28	90	5	100	34	25	11	28	1.91
40882813--40882928	43	2.7	43	87	2	153	34	26	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40884744--40884851	42	2.6	42	83	4	121	32	24	12	30	1.93
40885576--40885778	104	2.0	104	97	0	388	30	17	23	29	1.97
40886199--40886236	16	2.2	17	86	13	51	76	0	7	15	1.01
40886263--40886304	11	3.7	11	78	15	50	71	2	23	2	1.10
40886248--40886323	34	2.2	35	79	11	86	71	2	23	2	1.12
40893519--40893546	3	9.3	3	100	0	56	32	0	0	67	0.91
40893739--40893771	17	1.9	17	88	11	50	75	0	18	6	1.00
40896493--40896713	40	5.6	40	87	2	295	23	26	22	27	1.99
40901234--40901283	21	2.4	21	100	0	100	34	20	4	42	1.70
40903981--40904036	22	2.5	22	91	0	85	30	21	30	17	1.96
40907030--40907087	18	3.2	18	75	0	62	51	5	37	5	1.46
40907036--40907093	6	9.7	6	80	0	62	55	3	37	3	1.34
40907030--40907094	12	5.4	12	79	0	67	52	4	36	6	1.47
40914763--40914894	39	3.2	39	81	15	174	35	23	28	12	1.92
40914784--40914881	47	2.1	47	92	0	160	34	24	29	11	1.90
40914907--40914957	21	2.4	21	100	0	102	41	23	21	13	1.89
40918906--40918989	16	5.2	15	84	13	105	44	1	2	52	1.21
40918909--40918984	33	2.3	33	100	0	152	43	0	2	53	1.14
40919959--40919991	16	1.9	18	88	11	52	48	6	12	33	1.65
40920480--40920508	14	2.0	15	93	6	51	27	0	24	48	1.51
40921630--40921760	43	3.1	42	78	7	140	23	17	26	32	1.97
40924691--40924778	25	3.5	25	73	14	83	27	23	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40928610--40928742	27	5.0	27	83	5	146	39	20	11	29	1.87
40933336--40933451	41	2.8	41	81	0	133	25	27	24	23	2.00
40933726--40933957	54	4.3	54	76	10	206	30	8	18	43	1.79
40933696--40933957	27	9.7	27	75	9	178	30	8	18	41	1.81
40933718--40933957	81	3.0	80	81	7	272	31	8	17	42	1.80
40936083--40936127	17	2.6	18	79	10	58	42	17	20	20	1.90
40937693--40937783	42	2.2	42	97	0	173	16	24	37	21	1.94
40945072--40945123	23	2.3	22	75	21	54	9	23	1	65	1.32
40948912--40948951	20	2.0	21	85	5	55	17	15	0	67	1.23
40951023--40951082	27	2.3	26	85	2	75	35	20	23	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343