genome.fa.s10.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  125  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41810818--41810939	61	2.0	61	100	0	244	34	21	11	32	1.89
41818365--41818394	9	3.2	9	95	4	51	13	0	23	63	1.29
41823513--41823666	28	5.5	28	97	0	274	25	11	28	33	1.91
41823488--41823666	56	3.2	56	91	1	279	25	11	28	34	1.91
41831724--41831818	27	3.4	28	86	2	120	25	12	29	32	1.93
41831749--41831831	27	3.0	27	85	5	87	28	12	26	32	1.92
41838150--41838192	19	2.3	18	81	14	52	18	4	16	60	1.52
41839875--41840025	28	5.4	28	88	1	196	33	27	11	26	1.92
41844710--41844832	50	2.7	43	77	16	131	26	20	26	26	1.99
41844733--41844885	50	3.1	49	85	3	193	26	20	27	26	1.99
41845904--41845937	13	2.6	13	100	0	68	23	26	44	5	1.76
41849535--41849611	37	2.1	37	100	0	154	42	5	16	35	1.71
41850279--41850371	6	15.2	6	78	12	91	46	13	19	20	1.84
41850283--41850381	31	3.2	31	91	0	144	46	14	19	20	1.84
41850531--41850625	27	3.5	26	85	5	118	36	20	23	20	1.95
41850791--41850855	22	3.0	22	77	8	69	33	20	23	23	1.97
41851282--41851405	27	4.6	27	83	5	135	25	22	16	34	1.95
41851428--41851504	27	2.9	27	80	0	82	31	7	27	33	1.85
41851473--41851732	27	9.6	27	86	0	304	29	9	21	40	1.84
41859182--41859211	15	2.0	15	93	0	51	56	30	0	13	1.37
41861350--41861466	43	2.8	41	76	7	117	31	17	23	28	1.96
41863556--41863627	27	2.7	27	73	0	72	40	25	5	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41863612--41863710	27	3.7	27	88	0	144	40	18	13	28	1.88
41864584--41864816	27	8.7	27	83	1	299	39	20	8	30	1.83
41864588--41864816	54	4.3	54	90	2	345	39	20	8	30	1.83
41864574--41864816	107	2.3	108	91	0	398	39	20	9	31	1.83
41864584--41864897	27	11.6	27	77	6	242	40	21	8	29	1.83
41864584--41864950	27	13.6	27	75	7	199	38	22	8	30	1.84
41864935--41865157	27	8.3	27	85	0	275	36	20	19	24	1.95
41864943--41865158	81	2.7	81	87	1	308	36	19	19	24	1.95
41865402--41865453	27	2.0	26	84	3	68	17	26	21	34	1.95
41865469--41865531	33	1.9	32	87	3	90	23	23	15	36	1.94
41865494--41865552	27	2.2	26	84	3	73	25	23	15	35	1.94
41865672--41865870	6	32.3	6	73	17	151	19	18	14	48	1.81
41865671--41865861	25	7.7	25	76	11	98	19	18	13	48	1.81
41865701--41865776	37	2.1	37	89	0	116	18	18	15	47	1.83
41865672--41865870	62	3.2	62	86	3	269	19	18	14	48	1.81
41866516--41866692	27	6.6	27	85	0	228	32	19	23	24	1.98
41867078--41867142	22	3.0	22	80	8	78	20	23	23	33	1.97
41867301--41867434	27	5.0	27	84	8	141	19	21	21	37	1.95
41875921--41875977	31	1.9	29	82	10	71	31	24	14	29	1.94
41882457--41882542	46	1.9	45	85	4	120	31	27	19	20	1.97
41884145--41884214	27	2.6	27	84	8	81	18	25	21	34	1.96
41891466--41891688	40	5.6	39	83	5	232	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41891541--41891723	79	2.3	80	81	1	217	25	20	28	25	1.99
41893542--41893585	19	2.3	19	96	0	79	36	25	25	13	1.92
41894793--41894991	38	5.0	38	78	10	209	31	25	15	28	1.95
41897692--41897725	15	2.3	15	89	0	50	50	17	14	17	1.79
41900955--41901123	38	4.2	38	71	12	113	30	24	14	30	1.95
41900962--41901201	86	2.8	86	86	0	320	29	25	15	30	1.96
41901080--41901171	48	1.9	48	93	0	157	30	22	14	32	1.93
41905293--41905318	13	2.0	13	100	0	52	61	30	0	7	1.24
41907430--41907556	50	2.6	50	82	3	141	33	29	16	21	1.95
41913146--41913197	26	2.0	26	96	0	95	28	34	23	13	1.92
41912909--41913272	103	3.6	103	93	2	592	31	29	19	19	1.97
41946284--41946482	39	4.9	39	78	17	178	24	27	23	25	2.00
41954255--41954447	40	5.0	40	82	11	233	24	27	22	24	2.00
41954256--41954447	73	2.5	78	82	11	225	25	27	22	24	2.00
41956292--41956381	22	3.9	22	81	12	101	30	21	17	31	1.96
41956290--41956383	49	2.0	46	86	10	129	31	20	18	29	1.96
41956292--41956503	27	8.2	27	78	9	173	37	18	16	27	1.92
41956282--41956480	54	3.9	54	80	9	247	37	19	16	27	1.93
41956336--41956503	81	2.1	81	81	6	198	39	18	14	26	1.90
41963226--41963271	18	2.6	18	82	6	58	50	13	13	23	1.76
41963594--41963908	54	5.8	54	82	3	321	39	18	15	26	1.91
41963599--41963893	81	3.6	81	82	5	344	38	18	15	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41963594--41963908	27	11.7	27	82	4	287	39	18	15	26	1.91
41973220--41973402	39	4.7	39	85	2	208	22	18	28	30	1.97
41990540--41990669	43	3.0	43	73	14	115	24	18	25	31	1.97
41994182--41994248	25	2.7	25	76	4	73	34	20	16	28	1.95
41996746--41996776	14	2.3	14	94	5	55	29	6	19	45	1.75
41999057--41999215	43	3.7	42	84	5	169	24	16	26	32	1.97
41999050--41999247	86	2.3	87	78	8	201	27	15	25	31	1.96
42005154--42005237	22	3.7	22	71	17	73	39	13	20	27	1.89
42009711--42009741	16	1.9	16	100	0	62	25	6	9	58	1.54
42017211--42017394	29	6.3	29	77	9	176	39	11	26	22	1.88
42017174--42017311	59	2.4	57	84	11	190	40	10	23	24	1.87
42017211--42017394	59	3.1	58	81	8	185	39	11	26	22	1.88
42017209--42017394	88	2.1	89	86	5	254	39	11	26	22	1.88
42017826--42017858	16	2.1	16	94	0	57	42	0	3	54	1.15
42020074--42020145	36	2.0	35	81	2	81	34	23	12	29	1.92
42023287--42023353	26	2.6	26	83	9	75	38	8	23	28	1.85
42023291--42023462	56	3.2	54	81	6	179	41	8	22	28	1.82
42023287--42023459	27	6.4	27	74	9	165	42	8	22	26	1.81
42024700--42024738	18	2.2	18	90	4	62	12	28	43	15	1.83
42027267--42027397	67	2.0	67	90	0	208	19	18	32	30	1.95
42029690--42029865	47	3.8	47	73	12	173	22	30	18	28	1.97
42029690--42029861	93	1.8	95	85	5	242	23	29	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42031459--42031624	40	4.2	40	87	3	235	26	30	22	20	1.98
42034838--42034897	24	2.5	24	97	0	111	31	0	36	31	1.58
42036329--42036440	27	4.2	26	82	12	127	17	24	21	36	1.95
42036329--42036440	54	2.1	54	86	3	154	17	24	21	36	1.95
42037494--42037527	10	3.3	10	84	8	50	29	8	8	52	1.62
42042694--42042764	24	3.0	24	95	0	124	35	1	38	25	1.65
42042694--42042787	48	1.9	48	81	10	111	35	4	37	23	1.75
42044184--42044295	27	4.1	27	84	7	138	15	24	23	37	1.93
42044184--42044295	54	2.1	54	88	3	163	15	24	23	37	1.93
42047729--42047845	55	2.1	55	87	0	162	15	31	29	23	1.95
42053186--42053224	21	1.9	20	84	5	51	20	30	35	12	1.90
42055540--42055716	49	3.6	49	85	3	255	30	26	18	24	1.98
42055529--42055721	100	1.9	100	93	0	332	29	25	19	25	1.98
42056413--42056528	56	2.1	55	91	1	187	45	7	24	22	1.78
42057976--42058332	47	7.6	47	93	2	576	33	8	29	27	1.86
42058205--42058283	25	3.3	25	66	16	76	34	5	29	31	1.79
42065698--42065760	26	2.4	25	80	17	67	30	4	36	28	1.78
42067190--42067283	27	3.5	26	74	20	77	13	23	22	40	1.90
42076157--42076195	21	1.9	20	84	5	51	17	33	35	12	1.88
42079368--42079487	54	2.2	54	84	8	147	47	6	24	21	1.74
42080916--42080985	24	3.0	24	93	2	115	35	1	37	25	1.65
42082354--42082465	27	4.1	27	84	7	138	15	24	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42082354--42082465	54	2.1	54	88	3	163	15	24	23	37	1.93
42083515--42083548	10	3.3	10	84	8	50	29	8	8	52	1.62
42088703--42088771	22	3.0	24	87	8	106	34	1	37	26	1.65
42090132--42090243	27	4.1	27	84	7	138	15	24	23	37	1.93
42090132--42090243	54	2.1	54	88	3	163	15	24	23	37	1.93
42093673--42093789	55	2.1	55	87	0	162	15	31	29	23	1.95
42099118--42099156	21	1.9	20	84	5	51	20	30	35	12	1.90
42101469--42101645	49	3.6	49	85	3	255	30	26	18	24	1.98
42101458--42101650	100	1.9	100	93	0	332	29	25	19	25	1.98
42102344--42102460	56	2.1	56	93	0	198	46	7	23	22	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343