genome.fa.s10.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  192  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63724238--63724457	80	2.8	78	82	10	259	27	28	21	23	1.99
63737038--63737195	24	6.6	24	71	7	115	32	29	13	23	1.93
63746425--63746545	43	2.8	43	80	5	120	32	23	17	26	1.97
63753429--63753527	32	3.1	32	89	0	135	28	23	10	38	1.87
63753603--63753676	28	2.6	28	87	6	105	22	24	21	31	1.99
63753575--63753703	28	4.6	28	73	12	95	24	30	19	26	1.98
63761485--63761669	79	2.3	82	83	7	229	24	27	22	24	2.00
63761466--63761669	40	5.1	40	81	8	229	24	27	22	25	2.00
63763556--63763668	56	2.0	56	96	0	208	32	18	18	30	1.95
63773382--63773420	20	2.0	20	94	0	69	17	28	33	20	1.96
63773509--63773544	13	2.8	13	86	0	54	8	38	27	25	1.84
63787711--63787748	19	2.0	20	85	15	53	39	23	0	36	1.55
63787973--63788141	46	3.7	46	73	10	155	31	27	17	23	1.97
63787978--63788148	93	1.8	93	85	0	243	30	27	18	22	1.97
63795113--63795240	46	2.7	47	80	11	156	23	21	26	28	1.99
63798178--63798261	42	2.0	42	88	0	123	21	29	26	22	1.99
63803549--63803614	15	4.4	15	82	0	60	30	13	3	53	1.55
63810313--63810421	53	2.1	53	100	0	218	23	9	32	34	1.87
63810966--63811007	18	2.3	18	87	0	57	83	0	11	4	0.79
63819174--63819220	15	3.2	15	71	17	53	70	6	2	21	1.20
63820432--63820469	13	2.7	14	84	12	51	52	0	7	39	1.31
63832885--63832935	27	1.9	27	84	4	68	52	7	9	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63837856--63837895	21	1.9	21	84	0	53	60	0	5	35	1.19
63838828--63838858	2	16.0	2	93	6	55	48	0	0	51	1.00
63844248--63844418	93	1.8	93	92	0	288	28	29	20	21	1.98
63844239--63844414	46	3.8	46	75	15	182	29	28	20	21	1.98
63845851--63845884	17	1.9	18	94	5	61	58	11	8	20	1.59
63847533--63847573	21	2.0	21	85	9	57	26	36	12	24	1.91
63853031--63853179	55	2.8	53	82	6	183	34	19	26	19	1.96
63853048--63853191	53	2.7	53	84	2	180	35	18	25	20	1.95
63854137--63854162	13	2.0	13	100	0	52	38	15	7	38	1.76
63856348--63856399	22	2.3	22	86	6	68	32	0	0	67	0.91
63859961--63860045	37	2.2	36	82	12	100	25	7	1	65	1.25
63859980--63860304	3	107.0	3	70	9	133	27	7	4	61	1.41
63860101--63860345	115	2.1	116	99	0	483	27	6	4	61	1.39
63862529--63862572	23	1.9	23	81	9	54	59	0	4	36	1.18
63864066--63864101	19	1.9	19	88	5	56	47	2	11	38	1.54
63868664--63868739	40	1.9	40	88	0	116	15	11	34	38	1.84
63886259--63886450	44	4.4	44	85	1	242	38	21	13	26	1.91
63886259--63886659	88	4.4	88	74	12	306	35	20	15	28	1.93
63886540--63886674	44	3.1	44	80	6	139	34	18	17	29	1.94
63889989--63890059	30	2.3	31	92	2	117	29	15	9	45	1.78
63891724--63891773	23	2.1	24	82	10	59	2	22	2	74	1.03
63892682--63892752	37	1.9	37	94	0	124	23	16	14	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63899860--63899913	24	2.3	24	81	15	60	59	0	1	38	1.08
63901141--63901198	25	2.3	26	84	3	73	43	0	0	56	0.99
63905840--63905892	26	2.0	26	82	7	63	26	15	20	37	1.92
63907377--63907434	26	2.2	26	96	0	107	36	25	5	32	1.78
63911810--63912006	41	4.9	41	89	4	276	28	21	25	24	1.99
63912560--63912689	7	18.3	7	69	15	63	17	2	39	40	1.62
63912615--63912682	29	2.3	29	87	0	100	19	1	41	38	1.60
63912615--63912733	29	4.1	28	78	5	94	18	0	37	42	1.56
63912711--63912756	14	3.4	14	71	17	51	26	2	32	39	1.68
63912926--63913030	28	3.9	28	69	21	73	30	0	27	40	1.63
63912951--63912991	21	2.0	21	95	0	73	24	0	31	43	1.54
63912899--63913012	49	2.2	51	87	6	160	29	0	28	40	1.63
63912745--63913215	256	1.9	252	93	1	816	27	2	26	43	1.66
63913107--63913165	28	2.1	28	84	6	75	15	1	33	49	1.55
63913142--63913203	21	3.0	21	79	4	65	25	1	30	41	1.65
63913162--63913233	29	2.5	30	80	10	89	27	1	29	41	1.64
63914593--63914715	44	2.7	45	82	5	140	33	14	23	28	1.94
63916300--63916329	6	5.0	6	100	0	60	0	66	0	33	0.92
63918183--63918551	183	2.0	183	97	0	693	27	15	14	43	1.85
63919443--63919547	53	2.1	49	82	7	120	44	6	3	44	1.48
63922145--63922188	19	2.3	19	96	0	79	34	13	18	34	1.90
63925473--63925554	44	1.9	41	92	7	137	34	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63925473--63925594	41	2.9	42	84	9	142	31	18	21	29	1.96
63925478--63925723	42	5.7	42	77	9	180	28	19	21	30	1.97
63925478--63925678	42	4.7	41	78	7	188	28	19	21	30	1.97
63925478--63925723	84	2.9	83	78	10	237	28	19	21	30	1.97
63932633--63932699	24	2.7	23	80	17	64	58	7	4	29	1.46
63932659--63932749	46	2.0	46	88	0	137	63	6	1	28	1.26
63932548--63932980	26	17.7	24	68	18	155	60	4	5	29	1.39
63932779--63932971	25	8.0	24	68	15	71	62	1	5	30	1.28
63932926--63932980	25	2.1	27	86	6	78	61	5	3	29	1.35
63932933--63932987	25	2.2	25	87	9	76	54	3	5	36	1.41
63934707--63935150	44	10.0	44	73	8	299	28	21	18	31	1.97
63934709--63935152	133	3.3	131	83	3	516	28	21	18	31	1.97
63943272--63943318	19	2.5	20	89	6	71	48	6	19	25	1.72
63944318--63944352	15	2.3	15	100	0	70	22	28	14	34	1.93
63947019--63947127	46	2.3	48	84	6	132	60	6	3	29	1.39
63946925--63947127	26	8.2	24	70	16	130	60	6	4	28	1.43
63947167--63947225	30	2.0	30	89	0	91	66	0	1	32	1.02
63947315--63947369	25	2.1	27	86	6	78	61	5	5	27	1.40
63947314--63947376	25	2.5	24	80	10	72	57	4	6	31	1.45
63956204--63956238	17	2.1	17	88	0	52	2	17	20	60	1.49
63960750--63960778	14	2.0	15	93	6	51	31	13	13	41	1.84
63964592--63964632	19	2.2	18	91	4	64	65	0	4	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63969908--63970028	15	7.7	15	66	22	54	29	9	2	58	1.42
63969991--63970017	3	9.0	3	100	0	54	33	0	0	66	0.92
63970192--63970220	7	4.3	7	95	4	51	10	0	0	89	0.48
63971268--63971298	9	3.4	9	95	0	53	58	12	25	3	1.50
63971741--63971847	37	2.9	37	95	0	187	26	31	18	23	1.97
63972012--63972197	47	4.0	46	88	2	246	26	29	10	33	1.89
63972048--63972123	23	3.2	25	65	24	63	23	34	11	30	1.91
63972097--63972168	22	3.1	22	64	24	58	23	29	13	33	1.93
63975705--63975734	5	6.0	5	100	0	60	0	0	20	80	0.72
63979846--63979904	24	2.4	24	86	10	84	86	1	10	1	0.72
63980340--63980440	49	2.1	48	90	1	157	19	20	9	49	1.77
63981019--63981602	181	3.2	181	87	0	839	34	16	20	28	1.94
63983507--63983531	7	3.6	7	100	0	50	12	0	0	88	0.53
63983922--63983977	28	2.0	28	96	0	103	28	10	19	41	1.85
63984230--63984271	22	1.9	22	90	0	66	23	30	38	7	1.82
63985364--63985626	46	5.6	47	78	12	217	22	30	19	27	1.98
63985364--63985629	94	2.8	93	80	10	269	22	30	19	27	1.98
63988872--63989042	40	4.3	40	88	5	258	22	22	28	26	1.99
63996220--63996393	94	1.9	92	87	4	260	24	27	20	28	1.99
63999110--63999156	24	1.9	25	86	4	69	51	14	6	27	1.67
64000117--64000144	5	5.6	5	100	0	56	17	0	0	82	0.68
64004471--64004503	5	6.6	5	100	0	66	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64006641--64006688	22	2.2	22	85	7	62	33	0	8	58	1.28
64010419--64010486	31	2.2	31	86	5	93	41	5	14	38	1.70
64012378--64012423	17	2.7	17	80	10	58	39	0	0	60	0.97
64012574--64012618	24	1.9	24	90	4	74	48	20	15	15	1.80
64012900--64013788	131	6.6	135	84	7	910	25	18	23	32	1.97
64012962--64013744	261	2.9	263	85	4	986	25	18	24	32	1.97
64014058--64014134	7	10.4	7	75	8	64	15	0	35	49	1.45
64014708--64014758	9	5.9	8	75	24	50	60	3	0	35	1.15
64014797--64014846	23	2.3	21	82	6	55	70	0	6	24	1.10
64015407--64015527	35	3.5	35	94	0	215	11	45	23	19	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343