genome.fa.s10.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  209  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68843281--68843412	19	7.4	17	68	20	58	59	0	5	34	1.25
68843269--68843320	22	2.4	22	80	0	68	63	0	5	30	1.18
68843338--68843395	12	4.8	12	73	23	50	58	1	5	34	1.30
68843336--68843414	25	2.9	29	82	17	98	59	1	5	34	1.27
68846275--68846307	17	1.9	17	93	0	57	39	0	30	30	1.57
68848400--68848431	8	4.0	8	91	0	55	46	25	25	3	1.67
68848669--68848719	27	1.9	26	84	4	66	41	17	13	27	1.87
68849131--68849264	60	2.2	62	82	9	168	28	17	25	28	1.98
68858434--68858472	20	2.0	20	89	0	60	43	0	5	51	1.24
68858437--68858480	21	2.0	22	86	4	63	40	0	6	52	1.28
68858417--68858471	28	2.0	27	86	13	76	43	0	3	52	1.18
68858727--68858765	16	2.5	16	84	16	55	38	5	7	48	1.54
68862522--68862580	28	2.1	28	90	0	91	22	16	5	55	1.60
68864345--68864377	11	2.8	12	86	4	50	33	3	12	51	1.54
68865916--68866014	44	2.2	44	87	0	153	38	16	11	34	1.84
68868223--68868270	25	1.9	25	91	0	78	47	0	0	52	1.00
68869316--68869365	25	2.0	25	100	0	100	24	28	20	28	1.99
68872176--68872495	46	6.8	49	74	12	179	25	19	30	24	1.98
68877731--68877904	46	3.7	46	81	6	199	27	17	29	25	1.98
68879796--68879837	20	2.1	20	100	0	84	40	4	4	50	1.45
68882457--68882577	48	2.5	49	87	4	165	28	19	28	23	1.99
68905494--68905569	6	12.5	6	74	10	57	76	2	2	18	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68905466--68905573	5	20.2	5	76	14	69	74	1	3	20	1.07
68905494--68905573	18	4.8	16	81	12	65	76	2	2	18	1.02
68907379--68907578	53	3.8	53	77	8	194	35	17	24	23	1.95
68907386--68907578	108	1.8	105	86	5	280	35	17	24	23	1.95
68907822--68907852	16	1.9	16	93	0	53	41	0	22	35	1.54
68914944--68915194	55	4.8	54	77	12	233	36	17	25	21	1.95
68914954--68915148	105	1.8	109	86	7	292	34	17	25	22	1.95
68915385--68915415	16	1.9	16	93	0	53	41	0	22	35	1.54
68916689--68916722	12	2.8	12	90	0	50	26	47	20	5	1.73
68923075--68923106	16	1.9	17	93	6	57	43	0	21	34	1.53
68930272--68930526	55	4.8	53	75	12	195	36	17	25	21	1.94
68930718--68930748	16	1.9	16	93	0	53	41	0	22	35	1.54
68932032--68932065	12	2.8	12	90	0	50	26	47	20	5	1.73
68936270--68936376	3	35.7	3	74	5	83	64	3	5	26	1.32
68936270--68936375	18	5.7	18	76	6	95	65	3	5	25	1.32
68937509--68937559	26	2.0	26	88	0	75	7	1	41	49	1.43
68937970--68938677	143	5.0	143	84	1	830	27	21	20	30	1.98
68938276--68938375	44	2.2	44	83	1	119	24	21	25	30	1.99
68938463--68938671	44	4.5	44	69	14	141	30	23	18	27	1.98
68938557--68938705	45	3.3	45	74	3	131	29	26	16	27	1.97
68938546--68938716	89	1.9	89	82	0	216	30	24	16	27	1.97
68938546--68938749	89	2.3	89	81	1	212	29	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68939816--68939879	19	3.4	18	77	12	67	1	15	1	81	0.85
68939816--68939872	16	3.6	15	78	19	62	1	14	1	82	0.83
68939819--68939874	17	3.4	16	81	18	71	1	14	1	82	0.84
68939819--68939880	32	1.9	32	90	0	97	1	14	1	82	0.83
68939837--68939909	13	5.6	12	76	22	51	4	13	2	79	0.99
68939820--68939879	5	12.8	5	79	10	56	1	15	1	81	0.85
68944207--68944244	18	2.1	18	100	0	76	42	10	13	34	1.78
68946348--68946406	26	2.4	24	80	8	73	6	3	40	49	1.46
68947489--68947529	12	3.4	12	82	0	55	14	4	4	75	1.14
68954680--68954727	24	2.0	24	100	0	96	25	16	8	50	1.73
68969569--68969685	49	2.4	48	78	4	128	34	18	23	23	1.96
68970374--68970418	22	2.0	22	91	0	72	31	4	20	44	1.71
68976351--68976527	47	3.8	46	84	6	214	22	32	20	23	1.98
68976216--68976527	94	3.3	93	74	11	269	23	29	19	27	1.98
68981453--68981499	14	3.6	14	72	21	57	57	4	6	31	1.43
68981450--68981500	24	2.1	24	96	0	93	56	3	5	33	1.42
68986810--68986920	55	2.0	55	98	0	213	40	26	5	27	1.78
68994269--68994379	55	2.0	55	96	0	204	40	27	6	25	1.79
69005707--69005833	46	2.7	47	79	2	121	31	25	15	26	1.96
69008317--69008422	46	2.3	46	83	1	122	32	26	14	27	1.94
69015394--69015496	44	2.3	44	91	6	181	33	18	19	29	1.96
69015498--69015594	50	1.9	50	91	0	158	27	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69015482--69015614	50	2.7	51	75	9	148	27	20	21	30	1.98
69015604--69016312	44	15.3	44	68	20	272	32	17	20	29	1.96
69015332--69016346	94	10.9	94	77	8	756	32	18	20	29	1.96
69015484--69016250	44	16.3	48	67	20	233	31	17	20	30	1.96
69015932--69016266	50	7.1	49	65	20	149	31	18	21	28	1.97
69017423--69017469	23	2.0	23	87	0	67	38	4	12	44	1.62
69017433--69017487	23	2.3	23	90	3	83	30	3	10	54	1.52
69017472--69017513	13	3.4	13	90	9	70	38	0	0	61	0.96
69017476--69017518	13	3.6	12	87	9	61	37	2	0	60	1.10
69023494--69023569	3	24.7	3	74	15	50	64	2	5	27	1.28
69023480--69023523	15	2.9	15	86	10	54	61	4	6	27	1.41
69025465--69025581	49	2.4	48	84	5	153	28	33	22	16	1.95
69028398--69028526	27	4.8	28	74	7	90	34	5	3	55	1.41
69028575--69028674	24	4.2	23	71	13	71	32	6	4	58	1.41
69030862--69030945	26	3.2	26	96	0	150	33	4	25	36	1.77
69034356--69034487	67	2.0	67	95	0	237	37	19	7	34	1.80
69034611--69034657	21	2.2	22	81	11	53	46	10	2	40	1.50
69046882--69046922	20	2.0	20	100	0	82	24	9	29	36	1.87
69051336--69051488	42	3.6	42	73	5	144	30	17	22	29	1.97
69051286--69051488	87	2.3	87	87	0	280	32	18	20	29	1.96
69051291--69051445	45	3.5	45	73	5	145	32	20	20	27	1.97
69056363--69056472	26	4.2	26	97	0	184	33	5	24	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69058080--69058219	27	5.2	27	88	2	183	17	24	22	35	1.96
69058080--69058219	54	2.6	55	89	2	203	17	24	22	35	1.96
69061557--69061720	3	54.7	3	73	13	124	29	6	2	62	1.32
69066269--69066299	14	2.1	15	94	5	55	19	19	6	54	1.65
69066277--69066328	10	5.4	10	80	17	65	25	21	5	48	1.72
69066275--69066329	19	2.8	20	91	5	87	25	20	5	49	1.70
69066500--69066527	12	2.3	12	100	0	56	39	17	35	7	1.78
69068246--69068458	40	5.3	40	82	5	216	28	26	20	24	1.99
69068246--69068458	80	2.7	80	82	2	277	28	26	20	24	1.99
69076409--69076618	40	5.2	40	86	4	253	29	26	20	24	1.99
69081105--69081144	17	2.4	17	87	8	55	57	2	37	2	1.26
69086069--69086181	45	2.5	45	80	4	122	27	16	24	30	1.97
69087981--69088029	18	2.7	18	70	0	53	14	8	10	67	1.42
69088093--69088150	23	2.5	23	82	0	71	32	5	3	58	1.37
69088019--69088182	3	54.7	3	70	16	99	28	5	3	62	1.35
69088724--69088779	24	2.3	24	93	0	94	37	12	3	46	1.59
69090575--69090747	46	3.7	46	76	14	185	28	30	20	20	1.98
69090582--69090753	93	1.8	93	93	2	301	27	29	21	20	1.98
69092945--69092992	12	4.1	12	83	5	62	43	0	0	56	0.99
69092947--69092992	23	2.0	23	91	0	74	43	0	0	56	0.99
69111609--69111634	12	2.2	12	100	0	52	7	15	30	46	1.74
69111670--69111927	40	6.4	40	84	2	320	32	18	25	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69111671--69111917	81	3.0	81	84	4	320	32	18	25	23	1.97
69111987--69112111	48	2.7	46	83	6	151	48	30	1	19	1.58
69116404--69116451	20	2.4	21	82	10	64	25	0	6	68	1.12
69116392--69116451	20	3.1	20	77	13	63	25	0	5	70	1.08
69132574--69132690	48	2.4	48	89	0	189	19	13	29	37	1.90
69144666--69144856	48	4.0	48	82	5	226	21	16	28	33	1.95
69144666--69144846	96	1.9	96	86	4	258	21	17	26	34	1.95
69146705--69146770	29	2.3	29	81	0	87	22	22	31	22	1.98
69146762--69146799	17	2.2	17	95	0	67	23	21	23	31	1.98
69153767--69153822	15	3.8	15	76	2	51	35	5	19	39	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343