genome.fa.s10.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  177  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58637035--58637085	3	17.3	3	76	11	52	62	1	35	0	1.06
58637634--58637776	59	2.4	59	88	1	216	37	10	20	31	1.86
58638168--58638222	21	2.7	20	91	5	83	25	7	41	25	1.81
58638233--58638272	21	1.9	21	89	0	62	7	22	35	35	1.82
58638940--58639117	43	4.2	43	85	2	229	43	18	8	28	1.80
58638944--58639117	85	2.1	83	86	6	235	44	18	9	28	1.80
58640754--58640787	15	2.2	16	94	5	61	35	41	5	17	1.74
58641081--58641183	46	2.2	46	94	0	179	46	10	11	31	1.74
58641187--58641341	48	3.2	48	89	0	229	45	16	12	25	1.82
58641295--58641397	34	3.1	34	61	29	78	42	15	17	24	1.88
58641283--58641415	64	2.1	64	92	0	230	43	15	18	22	1.87
58641555--58641594	12	3.3	12	89	6	55	50	15	5	30	1.65
58641599--58641638	18	2.2	18	86	0	53	52	5	12	30	1.60
58641554--58641636	42	2.0	42	83	9	107	48	13	8	30	1.72
58641659--58641721	18	3.6	18	82	2	74	61	11	4	22	1.47
58641666--58641716	6	8.5	6	87	8	77	64	13	3	17	1.42
58642243--58642315	31	2.4	29	77	8	83	23	9	19	47	1.78
58651556--58651860	46	6.6	46	88	0	394	41	13	24	20	1.87
58651557--58651628	21	3.2	21	66	21	56	41	8	23	26	1.82
58651567--58651860	138	2.1	138	89	1	446	42	13	24	19	1.87
58659348--58659596	50	4.8	50	85	4	284	20	29	24	26	1.99
58659347--58659596	100	2.4	104	88	6	357	20	29	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58659691--58659722	13	2.5	13	94	0	55	56	12	0	31	1.37
58659934--58659991	30	1.9	30	89	0	89	31	24	3	41	1.71
58664332--58664359	14	2.0	14	100	0	56	42	21	14	21	1.88
58668598--58668822	40	5.7	40	84	5	278	24	21	28	26	1.99
58668598--58668845	119	2.1	119	80	7	272	25	20	27	26	1.99
58674540--58674689	41	3.7	41	77	5	142	22	20	27	29	1.99
58691099--58691267	40	4.2	40	88	0	214	25	27	24	22	2.00
58691107--58691306	80	2.5	81	80	9	239	25	28	24	22	2.00
58699122--58699264	40	3.6	40	91	0	214	24	28	23	23	1.99
58699109--58699303	80	2.4	82	78	10	233	26	28	22	23	1.99
58702946--58703047	43	2.4	43	86	3	134	27	14	24	33	1.94
58705316--58705361	24	2.0	23	86	4	65	45	8	13	32	1.73
58707343--58707620	48	5.7	48	77	5	245	24	30	18	26	1.98
58707436--58707620	98	1.9	98	82	2	237	26	31	17	24	1.97
58707436--58707620	50	3.8	48	84	2	199	26	31	17	24	1.97
58713300--58713409	43	2.6	43	86	2	141	24	14	27	33	1.94
58723738--58724031	50	5.8	50	77	5	270	29	25	18	26	1.98
58727297--58727336	18	2.2	18	86	8	55	65	22	2	10	1.35
58730332--58730384	26	2.0	27	85	7	74	24	15	22	37	1.92
58733135--58733174	18	2.2	18	86	8	55	45	27	12	15	1.82
58737402--58737481	32	2.5	30	75	13	70	26	26	22	25	2.00
58738324--58738372	23	2.1	23	96	0	89	28	24	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58741952--58742246	40	7.4	40	89	2	382	27	27	19	25	1.99
58741950--58742246	119	2.5	119	86	3	391	27	27	19	25	1.99
58749634--58749658	13	1.9	13	100	0	50	4	24	8	64	1.38
58753156--58753404	118	2.1	117	84	5	324	26	28	20	24	1.99
58753158--58753404	39	6.3	40	85	8	310	26	28	20	24	1.99
58757047--58757117	24	3.0	24	91	0	115	33	1	39	25	1.65
58758514--58758625	27	4.1	27	84	7	138	15	24	23	37	1.93
58758514--58758625	54	2.1	54	88	3	163	15	24	23	37	1.93
58759669--58759702	10	3.3	10	84	8	50	29	8	8	52	1.62
58764850--58764920	24	3.0	24	89	0	106	35	1	38	25	1.65
58766336--58766447	27	4.1	27	73	16	97	18	22	21	37	1.94
58768318--58768375	29	2.0	29	96	0	107	13	15	10	60	1.59
58769456--58769538	33	2.5	33	80	1	96	26	13	12	48	1.77
58769866--58769918	13	4.1	13	75	0	52	37	5	16	39	1.73
58771934--58771988	28	2.0	27	82	10	67	3	41	3	50	1.37
58772045--58772084	20	2.0	20	85	0	53	5	30	0	65	1.14
58775002--58775054	25	2.1	25	100	0	106	52	15	24	7	1.68
58789795--58789836	16	2.6	16	96	0	75	47	21	19	11	1.81
58790064--58790139	29	2.6	29	87	0	107	25	15	27	31	1.96
58790055--58790163	29	3.9	27	76	7	92	26	14	28	30	1.95
58790064--58790174	57	1.9	58	87	1	161	26	14	28	30	1.95
58792816--58792858	8	5.4	8	85	0	59	44	18	20	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58793077--58793172	29	3.3	29	86	1	113	28	16	26	29	1.97
58794438--58794502	28	2.3	28	84	5	87	38	9	21	30	1.85
58794575--58794797	39	5.7	39	91	1	340	17	21	30	30	1.97
58797582--58797656	36	2.1	36	100	0	150	44	14	10	30	1.79
58799198--58799284	43	2.0	43	84	0	111	29	32	13	24	1.94
58802860--58803044	79	2.3	81	84	7	236	24	22	27	25	2.00
58802861--58803044	40	4.6	40	83	9	216	24	22	27	25	2.00
58802913--58803077	79	2.1	79	84	6	210	26	21	27	25	1.99
58809910--58810094	79	2.3	82	83	7	229	24	21	27	26	1.99
58809912--58810094	40	4.6	41	81	11	211	24	21	27	26	1.99
58809963--58810117	79	2.0	79	82	7	190	25	19	27	27	1.99
58812180--58812215	18	1.9	19	88	5	56	41	0	16	41	1.48
58812647--58812775	67	1.9	66	84	7	172	33	17	28	20	1.95
58814997--58815038	18	2.4	18	84	4	50	21	42	21	14	1.88
58816676--58816709	17	1.9	17	88	5	50	44	2	14	38	1.61
58834287--58834418	29	4.7	29	85	1	171	31	29	13	25	1.94
58834476--58834509	18	1.9	18	88	5	52	20	38	23	17	1.93
58839174--58839274	27	3.6	28	83	4	123	31	22	25	19	1.98
58846977--58847077	28	3.6	27	79	4	103	31	19	25	22	1.98
58846988--58847077	27	3.2	27	79	7	92	32	21	24	22	1.98
58848508--58848538	8	3.9	8	91	0	53	3	22	25	48	1.66
58851551--58851797	40	6.2	40	89	1	327	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58858813--58858960	79	1.9	80	90	4	237	24	22	27	25	2.00
58858813--58858960	40	3.7	40	90	5	237	24	22	27	25	2.00
58858813--58858983	79	2.2	79	86	6	231	25	22	26	24	2.00
58862999--58863196	46	4.3	45	80	11	197	29	18	29	22	1.97
58865053--58865120	30	2.3	30	82	5	75	27	20	5	45	1.74
58869445--58869512	30	2.3	29	82	10	75	30	16	4	48	1.65
58872899--58873043	40	3.6	40	96	0	263	22	23	28	25	1.99
58873302--58873346	22	2.0	21	84	16	56	33	17	13	35	1.89
58897216--58897268	20	2.7	20	96	0	97	11	30	30	28	1.91
58898132--58898328	99	2.0	99	93	0	340	41	17	14	26	1.88
58903319--58903387	26	2.6	26	88	2	93	30	14	27	27	1.95
58903318--58903469	56	2.8	54	78	10	166	28	16	28	26	1.97
58903372--58903442	28	2.6	27	82	6	79	28	19	29	22	1.98
58903319--58903474	27	5.7	26	77	8	125	27	16	28	27	1.97
58908282--58908351	28	2.6	27	86	2	86	28	20	28	22	1.98
58908227--58908378	55	2.8	53	81	4	178	28	16	27	26	1.97
58908228--58908383	27	5.7	27	78	6	145	28	16	28	27	1.97
58916270--58916294	9	2.8	9	100	0	50	8	0	32	60	1.26
58917747--58917790	14	2.9	15	80	13	54	31	6	22	38	1.81
58921883--58922037	43	3.6	41	77	10	125	25	18	27	29	1.98
58921883--58922041	86	1.8	86	82	2	203	25	17	27	29	1.97
58928453--58928502	9	5.6	9	79	13	50	32	0	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58928453--58928505	8	6.1	8	82	10	52	35	0	1	62	1.06
58928454--58928494	19	2.2	19	86	8	57	26	0	2	70	0.99
58928453--58928502	18	2.8	18	79	8	57	32	0	2	66	1.03
58942906--58943021	37	3.1	37	94	0	196	25	31	18	24	1.98
58943140--58943574	47	9.1	49	91	4	701	28	30	8	31	1.88
58943140--58943571	96	4.5	96	96	0	774	28	30	9	31	1.88
58946452--58946618	45	3.6	45	83	11	189	23	31	18	25	1.97
58971671--58971712	22	1.9	22	85	9	59	26	11	33	28	1.92
58980490--58980606	46	2.6	44	89	8	164	28	18	29	23	1.98
58988025--58988191	46	3.6	46	76	13	180	29	28	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343