Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  138  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46182826--46182869
20
2.2
20
91
0
70
22
9
36
31
1.86
46183410--46183449
19
2.1
19
85
0
53
25
35
17
22
1.95
46185863--46185909
20
2.3
20
85
0
67
21
12
36
29
1.91
46186164--46186193
14
2.1
14
93
0
51
13
23
6
56
1.60
46187312--46187556
49
5.0
49
84
4
321
28
26
18
26
1.98
46187312--46187556
100
2.5
98
84
3
330
28
26
18
26
1.98
46189172--46189227
24
2.3
24
87
0
76
35
28
8
26
1.87
46189400--46189454
26
2.2
25
78
15
60
34
16
12
36
1.87
46190791--46190847
10
5.6
10
79
4
60
29
24
14
31
1.94
46190791--46190850
20
3.0
20
85
2
84
28
23
13
35
1.92
46192195--46192231
12
3.1
12
92
0
56
75
5
5
13
1.15
46192225--46192260
15
2.4
15
95
0
63
72
5
13
8
1.27
46194820--46194871
21
2.4
22
75
15
54
71
1
17
9
1.22
46196214--46196244
6
5.3
6
92
7
55
16
0
0
83
0.64
46196214--46196248
11
3.2
11
92
8
54
17
0
0
82
0.66
46198156--46198223
31
2.3
29
82
5
73
69
4
16
10
1.33
46199113--46199150
13
3.0
13
80
7
51
65
0
21
13
1.26
46201940--46201986
14
3.4
14
91
8
78
80
6
6
6
1.01
46214747--46214798
23
2.3
22
75
21
54
9
23
1
65
1.32
46221657--46221713
11
5.5
10
73
22
55
77
1
17
3
1.00
46221646--46221713
21
3.2
20
80
12
66
76
2
17
2
1.04
46221657--46221713
5
11.0
5
77
17
55
77
1
17
3
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46221657--46221713
16
3.7
14
80
17
60
77
1
17
3
1.00
46221754--46221784
12
2.6
12
100
0
62
45
12
16
25
1.83
46221788--46221823
18
2.1
18
89
5
56
72
0
13
13
1.13
46221781--46221823
18
2.3
19
80
15
54
72
2
13
11
1.22
46221787--46221868
30
2.7
31
77
5
87
65
1
19
13
1.32
46235669--46235732
30
2.1
30
85
5
85
76
4
14
4
1.11
46235695--46235732
14
2.6
15
87
4
51
81
2
13
2
0.90
46236734--46236874
6
22.3
6
65
12
59
70
2
19
7
1.24
46236735--46236828
18
5.4
18
75
7
86
70
3
18
8
1.27
46236734--46236872
12
11.5
12
69
17
74
70
2
19
7
1.24
46236850--46236886
14
2.5
15
95
4
67
75
5
18
0
0.99
46236889--46236951
33
1.9
33
84
12
85
53
6
26
12
1.62
46240187--46240248
21
3.0
21
87
0
88
32
3
32
32
1.74
46240202--46240248
10
4.5
11
78
7
53
27
2
34
36
1.69
46243520--46243566
21
2.2
22
84
3
60
14
25
2
57
1.49
46246008--46246050
22
1.9
23
90
4
70
25
4
32
37
1.77
46248024--46248067
22
2.0
22
95
0
79
25
36
4
34
1.76
46249950--46250056
56
1.9
56
84
3
144
26
20
13
40
1.89
46250680--46250734
20
2.8
20
88
0
83
29
16
29
25
1.97
46253902--46254284
27
14.2
27
84
0
424
31
20
7
41
1.79
46253929--46254284
81
4.4
81
89
0
487
30
19
6
42
1.77
46254520--46254580
31
1.9
32
83
9
81
22
22
16
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46254721--46254857
6
22.3
6
69
18
86
19
16
14
48
1.80
46254733--46254793
31
2.0
31
83
0
77
21
18
13
47
1.82
46254743--46254855
43
2.6
43
87
0
154
18
17
15
48
1.81
46256951--46257013
24
2.6
25
82
2
74
31
22
17
28
1.96
46258559--46258641
30
2.7
30
81
9
89
13
21
1
63
1.35
46258592--46258647
18
3.1
18
76
5
51
7
19
3
69
1.27
46258617--46258641
12
2.1
12
100
0
50
8
16
0
76
1.02
46258728--46258765
12
2.9
13
80
11
51
0
15
2
81
0.80
46258728--46258777
21
2.4
21
83
10
66
0
16
4
80
0.87
46259700--46259768
30
2.3
30
87
5
86
28
31
13
26
1.93
46262304--46262352
25
1.9
26
87
4
73
34
26
14
24
1.94
46262391--46262467
9
7.9
9
70
16
55
33
7
22
36
1.83
46262389--46262471
20
4.2
20
90
0
139
34
10
20
33
1.87
46262524--46262667
24
6.0
24
88
8
204
30
20
20
28
1.98
46262860--46262923
31
2.1
31
90
0
101
35
15
23
25
1.94
46263659--46263703
14
3.3
14
78
6
56
35
0
15
48
1.45
46264681--46264740
29
2.1
29
90
0
93
41
28
0
30
1.56
46264687--46264734
15
3.3
15
73
5
53
43
27
0
29
1.55
46264956--46264988
17
2.1
16
88
11
50
75
6
6
12
1.16
46266018--46266073
30
1.9
28
85
7
76
53
3
30
12
1.55
46268265--46268309
14
3.3
14
78
6
56
35
0
15
48
1.45
46269287--46269346
29
2.1
29
90
0
93
41
28
0
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46269293--46269340
15
3.3
15
73
5
53
43
27
0
29
1.55
46275263--46275294
12
2.6
12
95
5
55
65
3
6
25
1.31
46276657--46276709
23
2.4
22
76
20
56
9
18
1
69
1.25
46279051--46279082
12
2.6
12
95
5
55
65
3
6
25
1.31
46280058--46280094
8
4.6
8
87
12
58
10
24
10
54
1.67
46285287--46285349
21
3.0
21
88
2
90
30
3
33
33
1.74
46288715--46288967
68
3.8
66
74
12
193
30
16
28
24
1.96
46290875--46290944
28
2.5
28
97
0
131
28
17
30
24
1.97
46290836--46291015
98
1.9
96
87
6
265
28
15
26
29
1.96
46290903--46291069
70
2.4
70
86
0
235
29
15
25
28
1.96
46291405--46291438
10
3.4
10
91
0
50
20
0
20
58
1.39
46293350--46293621
50
5.7
46
72
12
182
24
29
19
26
1.98
46294217--46294479
45
5.9
45
93
0
420
25
19
15
39
1.91
46294217--46294479
89
2.9
90
93
1
429
25
19
15
39
1.91
46294217--46294479
134
2.0
134
91
0
427
25
19
15
39
1.91
46299716--46299763
18
2.4
19
76
16
53
25
12
4
58
1.52
46300606--46300866
45
5.9
45
90
2
393
26
19
15
38
1.91
46300606--46300866
87
2.9
88
90
3
389
26
19
15
38
1.91
46300606--46300863
132
2.0
132
91
0
417
26
20
15
38
1.92
46305446--46305490
14
3.3
14
78
6
56
48
15
0
35
1.45
46306603--46306665
21
3.0
21
88
2
90
30
3
33
33
1.74
46313522--46313574
23
2.4
22
76
20
56
9
18
1
69
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46319741--46319785
14
3.3
14
78
6
56
35
0
15
48
1.45
46320758--46320817
29
2.1
29
90
0
93
41
28
0
30
1.56
46320764--46320811
15
3.3
15
73
5
53
43
25
0
31
1.55
46324111--46324355
99
2.5
98
80
5
244
27
19
24
28
1.98
46324111--46324302
50
3.9
50
75
5
147
28
19
23
28
1.99
46324111--46324384
150
1.8
149
81
3
345
27
18
25
28
1.98
46326801--46326879
24
3.5
22
74
15
72
72
2
20
5
1.16
46329636--46329662
12
2.2
12
100
0
54
22
37
14
25
1.93
46331384--46331457
28
2.6
29
82
2
96
29
32
12
25
1.92
46331384--46331463
29
2.8
29
74
10
85
27
33
13
25
1.93
46339920--46339960
17
2.4
18
80
8
50
14
24
4
56
1.58
46344231--46344262
6
5.3
6
100
0
64
84
0
0
15
0.63
46345604--46345656
23
2.4
22
76
20
56
9
18
1
69
1.25
46351429--46351464
16
2.2
16
90
0
54
13
22
11
52
1.72
46356445--46356485
18
2.3
18
83
8
57
41
14
24
19
1.89
46359207--46359324
55
2.1
55
84
6
159
25
22
13
38
1.90
46359948--46360002
20
2.8
20
88
0
83
29
16
29
25
1.97
46361284--46361324
15
2.7
16
74
11
50
7
26
0
65
1.18
46362371--46362433
26
2.3
27
84
10
76
12
11
1
74
1.14
46363755--46363872
55
2.1
55
84
6
159
25
22
13
38
1.90
46364494--46364548
20
2.8
20
88
0
83
29
16
29
25
1.97
46365829--46365869
15
2.7
16
74
11
50
7
26
0
65
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46366026--46366064
15
2.4
15
87
12
51
10
20
2
66
1.33
46366911--46366978
27
2.4
29
83
14
88
10
10
2
76
1.12
46367024--46367056
13
2.5
13
90
9
50
12
6
6
75
1.16
46379635--46379678
22
2.0
22
90
0
70
25
36
2
36
1.69
46380183--46380226
22
2.0
22
95
0
79
34
4
36
25
1.76
46381573--46381679
56
1.9
56
86
3
153
25
21
13
40
1.89
46382303--46382357
20
2.8
20
88
0
83
29
16
29
25
1.97
46383175--46383246
26
2.7
27
84
2
92
38
15
18
27
1.90
46386036--46386122
43
2.0
43
86
4
122
24
17
28
29
1.97
46397962--46398016
15
3.8
14
80
7
65
74
1
21
1
1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343