Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  340  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108864472--108864551
25
3.3
25
68
16
69
55
7
2
35
1.42
108864460--108864551
47
2.0
47
95
0
166
52
7
3
36
1.46
108870071--108870121
25
2.0
27
84
7
70
45
1
0
52
1.12
108873944--108874440
189
2.6
189
83
2
543
30
20
18
29
1.97
108876263--108876299
16
2.2
17
90
4
58
29
2
0
67
1.04
108878183--108878224
22
1.9
22
85
9
59
35
0
21
42
1.53
108878191--108878223
13
2.3
15
90
10
52
36
0
18
45
1.49
108878450--108878495
5
9.2
5
100
0
92
39
0
19
41
1.52
108879031--108879088
25
2.3
25
84
0
71
36
5
15
43
1.69
108879037--108879088
20
2.6
20
81
6
61
36
3
15
44
1.65
108879024--108879088
5
13.0
5
72
6
51
36
4
16
41
1.70
108882911--108883407
189
2.6
189
84
2
597
30
21
18
29
1.97
108886195--108886232
16
2.3
17
90
4
60
31
0
0
68
0.90
108886204--108886590
199
2.0
197
91
3
625
30
18
7
43
1.78
108888657--108888739
5
16.6
5
77
5
78
36
3
19
40
1.69
108892515--108892539
3
8.3
3
100
0
50
32
0
0
68
0.90
108897895--108897930
18
1.9
19
94
5
65
33
0
0
66
0.92
108897895--108897941
18
2.6
18
86
6
51
31
2
0
65
1.04
108901480--108901551
34
2.1
35
92
5
119
30
16
27
25
1.97
108903794--108904118
152
2.1
152
92
3
539
56
6
7
28
1.52
108904105--108904141
8
4.5
8
96
3
65
56
0
0
43
0.99
108904580--108904633
27
2.0
27
88
0
81
20
37
27
14
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108906863--108906912
23
2.2
23
85
0
64
26
8
0
66
1.19
108906892--108906941
15
3.4
16
76
18
63
30
6
0
64
1.18
108907259--108907288
14
2.1
14
93
0
51
26
10
0
63
1.26
108908714--108908773
21
3.0
20
80
7
59
31
8
3
56
1.45
108911631--108911679
3
16.3
3
100
0
98
67
0
0
32
0.91
108912000--108912120
46
2.7
46
94
1
217
36
18
14
31
1.90
108916945--108916985
21
2.0
21
90
0
64
19
29
21
29
1.98
108924001--108924113
9
12.3
9
71
16
72
31
2
1
63
1.18
108924004--108924096
48
1.9
48
82
8
118
31
2
2
64
1.17
108924080--108924132
27
2.0
27
85
7
72
41
1
0
56
1.10
108924335--108924424
30
3.0
30
100
0
180
33
10
20
36
1.86
108925150--108925219
34
2.1
34
100
0
140
40
8
14
37
1.76
108927441--108927479
17
2.3
16
86
8
51
15
10
0
74
1.07
108927525--108927578
15
3.9
14
82
17
60
72
3
0
24
1.01
108934124--108934167
21
2.0
22
91
4
72
34
11
15
38
1.84
108935609--108935650
21
2.0
21
86
9
59
9
4
9
76
1.15
108937520--108937607
34
2.6
34
81
5
97
34
9
15
40
1.79
108937558--108937623
34
1.9
34
81
6
80
31
4
16
46
1.67
108940204--108940236
3
11.0
3
100
0
66
66
0
0
33
0.92
108943079--108943145
31
2.2
31
81
5
73
53
2
2
40
1.31
108944447--108944512
14
4.9
12
76
23
53
46
3
1
48
1.26
108944495--108944533
18
2.2
18
90
0
60
53
2
0
43
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108945534--108945588
9
5.9
9
75
8
56
36
1
0
61
1.06
108946729--108946783
3
18.3
3
100
0
110
0
32
0
67
0.91
108951142--108951304
46
3.5
46
88
0
236
19
22
14
44
1.85
108951285--108951396
45
2.5
45
85
0
152
22
23
16
37
1.94
108953107--108953143
8
4.6
8
93
0
65
75
2
0
21
0.92
108953406--108953464
30
1.9
31
86
10
86
32
15
1
50
1.54
108953406--108953474
30
2.3
31
82
12
81
31
14
4
49
1.63
108969741--108969780
21
2.0
20
85
5
53
40
2
0
57
1.12
108969755--108969795
13
2.7
15
85
14
50
39
0
0
60
0.96
108974757--108974828
35
2.1
35
97
0
135
31
25
2
40
1.70
108989123--108989182
31
1.9
31
93
0
102
56
6
10
26
1.57
109007627--109007680
16
3.4
16
75
10
56
25
3
16
53
1.59
109012237--109012288
23
2.3
23
82
0
59
30
0
7
61
1.24
109014916--109015204
40
7.3
41
82
3
299
24
26
23
24
2.00
109023968--109024012
15
2.9
15
86
6
54
15
4
0
80
0.87
109023968--109024025
19
3.2
18
83
11
73
17
3
0
79
0.87
109023975--109024034
5
11.6
5
74
13
50
20
1
0
78
0.84
109023991--109024030
16
2.6
14
88
11
53
22
0
0
77
0.77
109024113--109024217
42
2.5
42
82
0
138
28
32
12
26
1.92
109025170--109025212
1
43.0
1
80
0
50
90
0
6
2
0.52
109025170--109025212
19
2.3
19
92
4
70
90
0
6
2
0.52
109027123--109027149
11
2.5
11
100
0
54
70
0
0
29
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109033996--109034331
168
2.0
168
92
1
566
27
15
23
33
1.95
109041545--109041632
44
2.0
44
100
0
176
52
13
6
27
1.66
109043720--109043761
22
1.9
22
85
0
57
45
7
2
45
1.44
109049450--109049486
11
3.2
12
81
14
51
29
0
0
70
0.88
109060524--109060625
49
2.1
48
90
5
161
40
13
19
26
1.89
109064538--109064565
6
4.7
6
100
0
56
53
0
0
46
1.00
109075985--109076056
36
2.0
36
94
0
126
25
0
45
29
1.53
109079681--109079757
3
25.0
3
82
10
84
59
0
7
32
1.26
109080173--109080207
18
1.9
18
88
0
52
60
0
14
25
1.35
109080220--109080298
21
3.8
21
71
22
69
62
0
5
32
1.17
109080238--109080301
3
20.3
3
81
9
74
62
0
4
32
1.16
109080599--109080650
14
3.6
14
76
23
54
65
0
5
28
1.16
109080599--109080653
15
3.8
14
79
13
58
63
0
7
29
1.21
109080733--109080833
23
4.5
21
68
15
60
65
2
8
22
1.35
109084258--109084297
20
1.9
22
90
10
66
32
5
7
55
1.50
109084281--109084339
26
2.4
24
72
16
59
37
3
6
52
1.45
109085684--109085726
21
2.0
21
95
0
77
53
9
11
25
1.67
109091072--109091173
50
2.0
50
100
0
204
36
25
7
30
1.84
109103513--109103599
43
2.0
43
97
0
165
40
20
18
20
1.92
109105727--109105817
44
2.1
44
95
0
164
29
17
14
38
1.89
109108656--109108746
46
2.0
46
91
0
146
51
9
6
31
1.61
109111321--109111359
12
3.5
12
86
13
57
25
5
7
61
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109111440--109111481
20
2.2
20
86
4
59
16
0
11
71
1.14
109111701--109111729
7
4.3
7
91
8
51
17
68
13
0
1.20
109111703--109111729
13
2.1
13
100
0
54
14
70
14
0
1.17
109129404--109129468
33
2.0
33
84
6
87
52
3
4
40
1.38
109131249--109131324
9
8.6
9
84
8
84
44
19
7
27
1.78
109132738--109132768
6
5.2
6
92
0
53
38
0
45
16
1.47
109139223--109139268
14
3.1
16
78
15
53
15
4
15
65
1.43
109145973--109146003
16
1.9
16
93
0
53
19
0
12
67
1.22
109149477--109149515
15
2.5
16
83
4
53
66
10
5
17
1.39
109161213--109161251
15
2.5
16
87
4
62
71
7
2
17
1.21
109166099--109166137
15
2.5
16
87
4
62
69
10
2
17
1.28
109171780--109171820
21
2.0
21
90
0
64
29
21
29
19
1.98
109174996--109175023
5
5.6
5
100
0
56
82
0
0
17
0.68
109177861--109177901
18
2.3
18
100
0
82
21
46
14
17
1.84
109181818--109181985
84
2.0
84
100
0
336
41
20
9
28
1.83
109198903--109198931
3
9.7
3
100
0
58
68
0
0
31
0.89
109199621--109199659
15
2.5
15
84
15
53
66
10
5
17
1.39
109213178--109213216
15
2.5
15
84
15
53
66
10
5
17
1.39
109216446--109216475
15
1.9
16
93
6
53
60
6
13
20
1.55
109220674--109220704
13
2.4
13
94
0
53
35
9
12
41
1.76
109231763--109231800
18
2.1
18
85
9
51
52
10
13
23
1.71
109247515--109247714
111
1.8
110
87
2
258
37
14
8
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109255009--109255042
17
2.0
18
88
11
54
0
14
0
85
0.60
109261185--109261237
27
2.0
27
92
0
88
24
3
35
35
1.74
109271009--109271093
42
2.0
42
97
0
161
23
20
28
28
1.99
109274152--109274176
9
2.8
9
100
0
50
24
0
0
76
0.80
109274370--109274419
15
3.4
15
75
5
57
30
6
4
60
1.39
109274408--109274451
22
2.0
22
100
0
88
40
4
0
54
1.21
109277684--109277714
14
2.3
14
94
5
55
29
0
0
70
0.87
109277685--109277715
16
1.9
16
93
0
53
29
0
0
70
0.87
109282774--109282805
11
2.9
11
100
0
64
56
0
34
9
1.32
109288097--109288208
36
3.1
36
90
0
179
25
11
28
34
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343