genome.fa.s10.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  145  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48143570--48143634	13	5.2	13	73	14	55	72	3	18	6	1.19
48144531--48144575	22	2.0	22	86	0	63	26	15	31	26	1.96
48146835--48147051	48	4.7	45	75	12	154	23	30	19	26	1.98
48146783--48147100	94	3.4	93	73	7	270	22	29	19	27	1.98
48151232--48151457	47	4.8	45	74	8	157	20	29	20	29	1.98
48151279--48151452	94	1.9	94	87	0	258	21	29	20	28	1.98
48160894--48160956	25	2.5	25	92	0	99	44	12	22	20	1.85
48161077--48161157	26	3.1	26	82	3	90	40	20	20	17	1.91
48161798--48161830	12	2.6	13	85	9	50	9	45	0	45	1.35
48162898--48162959	28	2.2	28	91	0	97	32	27	9	30	1.89
48163068--48163130	28	2.2	28	83	8	74	20	20	26	31	1.98
48163594--48163632	19	2.1	19	85	0	51	15	5	7	71	1.26
48164182--48164247	22	3.0	22	80	8	89	34	24	21	19	1.96
48164674--48165167	27	18.3	27	83	4	466	24	20	18	37	1.94
48164674--48165167	54	9.2	54	82	4	548	24	20	18	37	1.94
48164674--48165158	81	6.0	81	85	0	603	24	20	18	37	1.94
48165212--48165459	53	4.6	53	78	4	248	31	8	20	39	1.83
48165214--48165459	80	3.1	79	81	5	264	30	8	19	40	1.83
48165214--48165459	27	9.2	27	82	4	239	30	8	19	40	1.83
48166737--48166970	55	4.4	54	74	15	195	37	17	23	21	1.94
48167183--48167213	16	1.9	16	93	0	53	41	0	22	35	1.54
48168851--48168952	42	2.4	43	81	6	118	28	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48169280--48169304	9	2.8	9	100	0	50	24	24	0	52	1.48
48176989--48177027	18	2.2	18	90	0	60	41	12	20	25	1.88
48177375--48177658	27	10.5	27	80	3	268	41	17	12	27	1.86
48177379--48177658	81	3.5	81	85	3	359	41	17	12	27	1.86
48181768--48181811	19	2.3	19	96	0	79	31	38	25	4	1.76
48183224--48183340	27	4.3	27	84	0	153	27	23	8	40	1.84
48183238--48183340	54	1.9	54	91	0	170	29	23	6	40	1.80
48183339--48183497	54	2.9	53	81	3	192	38	22	10	28	1.86
48183372--48183497	27	4.7	27	86	3	173	39	23	7	28	1.83
48183488--48183580	27	3.4	27	80	14	109	43	18	6	32	1.75
48184512--48184581	25	2.8	25	78	4	70	28	24	22	24	1.99
48184728--48184815	42	2.1	42	89	0	131	27	10	19	43	1.83
48186805--48186836	16	2.0	16	93	0	55	50	34	6	9	1.60
48188132--48188173	19	2.2	19	95	0	75	26	14	42	16	1.86
48188253--48188370	28	4.2	29	81	4	143	29	13	28	27	1.94
48189476--48189509	17	1.9	18	88	5	52	11	29	44	14	1.81
48196976--48197057	34	2.4	34	85	4	103	25	28	23	23	2.00
48204433--48204580	27	5.5	26	80	7	129	38	18	10	32	1.85
48204641--48204734	34	2.8	34	90	3	136	19	12	23	44	1.85
48207854--48208024	27	6.3	27	81	5	152	38	20	10	30	1.86
48207852--48207956	54	1.9	54	90	7	169	39	22	9	28	1.86
48207868--48208037	54	3.2	52	81	8	171	38	18	12	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48208082--48208180	34	2.9	34	86	0	135	22	8	21	48	1.76
48214565--48214679	57	2.0	58	89	1	178	46	6	16	29	1.73
48220743--48220886	43	3.4	43	72	11	116	33	27	15	24	1.95
48221211--48221508	148	2.0	150	95	2	537	37	21	5	35	1.76
48223471--48223513	16	2.7	16	88	0	59	55	20	16	6	1.64
48223747--48223838	29	3.2	29	83	4	116	27	13	30	29	1.94
48237231--48237270	20	2.1	18	90	9	62	0	32	0	67	0.91
48249494--48249665	93	1.8	93	96	0	317	27	29	21	20	1.98
48249487--48249662	46	3.8	46	79	12	216	28	29	21	20	1.98
48254903--48255164	103	2.6	101	90	4	404	19	20	30	30	1.97
48262449--48262500	26	2.0	26	96	0	95	13	23	34	28	1.92
48262371--48262634	103	2.6	102	93	3	433	19	20	29	30	1.97
48267175--48267346	93	1.8	93	96	0	317	27	29	21	20	1.98
48267168--48267343	46	3.8	46	79	12	216	28	29	21	20	1.98
48275949--48276033	43	2.0	43	95	0	152	32	22	20	24	1.97
48276526--48276585	27	2.3	26	82	2	66	23	21	20	35	1.96
48280327--48280411	43	2.0	43	90	0	134	32	21	18	27	1.97
48297304--48297386	31	2.7	31	96	3	152	27	26	16	28	1.97
48297606--48297675	25	2.8	25	89	4	97	25	22	25	25	2.00
48298577--48298841	27	9.8	26	82	5	190	31	8	19	40	1.82
48298691--48298874	54	3.4	53	85	5	228	28	10	21	39	1.86
48298691--48298883	81	2.4	81	83	6	239	28	10	22	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48298691--48298841	27	5.6	27	92	1	241	28	7	22	41	1.82
48298873--48298935	27	2.3	27	83	5	74	39	7	23	28	1.83
48301377--48301481	40	2.6	40	84	0	120	20	17	25	36	1.94
48309997--48310157	40	4.0	40	85	3	225	22	21	27	27	1.99
48312106--48312182	40	1.9	40	89	5	120	22	18	24	35	1.96
48312109--48312199	40	2.3	40	84	3	112	21	18	25	34	1.96
48312189--48312255	28	2.4	28	87	0	89	19	8	34	37	1.83
48316033--48316090	30	1.9	31	82	3	73	37	12	22	27	1.89
48316585--48316668	44	1.9	44	82	4	107	42	11	21	23	1.86
48316859--48317005	55	2.7	54	81	6	179	35	19	24	21	1.96
48317285--48317432	54	2.7	55	86	3	201	35	18	25	20	1.96
48316595--48317458	435	2.0	435	97	0	1629	35	17	23	23	1.95
48317294--48317482	55	3.5	54	81	5	195	35	18	24	21	1.95
48321274--48321317	22	2.0	22	82	8	54	38	13	18	29	1.89
48321540--48321761	40	5.6	40	90	1	340	28	26	22	22	1.99
48335291--48335512	82	2.8	80	87	7	301	23	23	27	25	2.00
48335291--48335512	40	5.6	40	86	8	301	23	23	27	25	2.00
48343059--48343282	40	5.6	40	84	3	261	23	22	26	26	2.00
48345399--48345526	49	2.7	47	81	6	150	27	19	27	25	1.99
48353221--48353289	36	1.9	36	90	0	111	26	21	26	26	2.00
48353172--48353338	85	2.0	85	93	0	289	25	19	26	28	1.98
48359445--48359477	12	2.8	12	100	0	66	24	27	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48364521--48364553	7	4.7	7	100	0	66	12	0	0	87	0.53
48364577--48364606	7	4.1	7	95	4	51	46	0	0	53	1.00
48371724--48371819	48	2.0	48	95	0	174	16	12	31	39	1.86
48372992--48373067	34	2.2	34	92	0	125	28	19	19	31	1.97
48373448--48373527	40	2.0	40	100	0	160	42	17	7	32	1.77
48379065--48379328	40	6.6	40	94	0	465	29	20	28	21	1.98
48387338--48387411	34	2.2	34	82	0	94	28	18	21	31	1.97
48389217--48389293	25	3.1	25	79	1	75	29	11	27	31	1.92
48398150--48398309	43	3.8	42	73	13	139	22	15	30	31	1.94
48400962--48401108	50	3.0	50	86	1	188	27	28	17	26	1.97
48403206--48403237	15	2.1	16	94	5	57	59	15	12	12	1.61
48405977--48406111	49	2.7	50	86	3	175	30	24	17	28	1.97
48405991--48406123	50	2.7	50	88	1	178	30	24	16	27	1.97
48406770--48406829	30	2.0	30	83	6	77	28	26	6	38	1.81
48416808--48417059	40	6.4	39	87	5	303	22	27	23	26	1.99
48416833--48417066	120	2.0	118	88	3	344	21	27	23	26	1.99
48422693--48422916	40	5.6	40	85	3	270	23	23	27	25	2.00
48422697--48422916	83	2.7	80	86	6	268	23	23	27	25	2.00
48437588--48437698	57	2.0	57	84	8	147	26	32	15	26	1.95
48437585--48437696	28	4.0	28	82	6	129	26	32	15	25	1.95
48440644--48440684	21	2.0	21	95	0	73	26	17	34	21	1.95
48447094--48447222	46	2.8	46	93	0	213	19	20	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48452187--48452236	25	2.0	25	100	0	100	28	24	8	40	1.83
48454630--48454751	50	2.5	49	81	5	142	28	22	13	35	1.92
48456157--48456186	13	2.3	13	94	0	51	56	13	6	23	1.60
48461224--48461351	28	4.5	28	88	2	175	28	12	25	32	1.92
48461224--48461351	57	2.2	57	88	2	186	28	12	25	32	1.92
48471066--48471121	20	2.8	20	77	17	64	53	0	1	44	1.11
48471096--48471188	49	1.9	48	80	10	109	63	1	4	31	1.21
48471206--48471261	9	6.0	9	76	15	51	66	1	3	28	1.19
48471106--48471261	10	16.0	10	67	18	53	62	1	5	29	1.29
48476328--48476384	23	2.5	23	85	2	80	17	22	22	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343