genome.fa.s10.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  212  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69746165--69746194	15	1.9	16	93	6	53	26	0	3	70	1.03
69766516--69766611	21	4.5	21	89	2	129	34	25	23	16	1.95
69766516--69766624	42	2.5	43	83	2	157	33	22	23	19	1.97
69766992--69767049	15	3.8	15	88	2	89	51	12	0	36	1.39
69768320--69768351	5	6.2	5	96	3	55	56	0	0	43	0.99
69771393--69771445	23	2.4	22	76	20	56	9	18	1	69	1.25
69774837--69774904	31	2.2	31	94	0	118	36	7	14	41	1.74
69784123--69784215	18	5.2	18	84	0	123	33	15	22	29	1.94
69788779--69788834	23	2.3	24	85	11	71	37	0	0	62	0.95
69789780--69789825	20	2.3	19	85	11	56	19	0	13	67	1.23
69798588--69798659	21	3.3	21	68	19	58	20	12	25	41	1.87
69798580--69798670	45	2.0	45	89	0	137	21	13	24	40	1.89
69804576--69804624	16	3.1	16	80	11	64	24	0	4	71	1.03
69805732--69805780	25	2.0	25	84	4	64	63	8	0	28	1.23
69805744--69805789	25	1.9	23	86	8	65	63	8	0	28	1.24
69805779--69805817	12	3.3	12	82	7	53	82	7	0	10	0.86
69806006--69806051	17	2.7	18	73	10	51	56	0	0	43	0.99
69806177--69806214	13	3.0	13	96	3	69	0	31	55	13	1.38
69809082--69809151	21	3.2	21	64	18	52	21	8	25	44	1.80
69809077--69809164	45	2.0	45	93	0	149	23	9	26	40	1.84
69831551--69831722	43	4.0	43	77	6	177	32	25	16	25	1.96
69839989--69840174	67	2.8	67	80	11	179	32	16	29	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69844286--69844324	10	3.8	10	93	6	69	33	17	17	30	1.94
69844285--69844324	21	1.9	21	100	0	80	35	17	17	30	1.93
69844371--69844440	25	2.8	25	86	0	95	27	20	22	30	1.98
69844370--69844453	25	3.4	25	78	14	77	29	17	22	29	1.97
69846250--69846403	43	3.6	44	81	9	149	30	26	17	25	1.97
69850559--69850592	17	1.9	18	94	5	61	23	47	23	5	1.73
69857207--69857272	27	2.5	26	73	11	62	46	15	9	28	1.76
69859965--69860017	20	2.8	21	83	16	71	26	0	20	52	1.46
69860846--69860902	13	4.3	13	73	4	51	43	0	19	36	1.51
69860931--69860994	30	2.1	30	91	0	101	50	6	17	26	1.69
69868163--69868211	21	2.3	21	100	0	98	34	12	8	44	1.71
69873689--69873808	47	2.6	46	82	11	138	29	19	29	22	1.98
69878540--69878590	27	1.9	26	88	4	75	31	21	23	23	1.98
69883487--69883691	27	7.6	27	85	3	205	29	29	15	26	1.96
69883487--69883690	54	3.8	54	84	3	257	29	29	15	25	1.96
69883541--69883690	81	1.9	81	88	0	228	27	28	16	27	1.97
69886715--69886818	27	3.9	27	80	10	106	18	22	21	38	1.93
69896341--69896395	22	2.5	22	96	0	101	10	34	32	21	1.89
69899599--69899771	46	3.7	46	77	10	190	21	20	27	31	1.98
69899596--69899766	93	1.8	93	91	0	279	21	20	28	30	1.98
69912551--69912602	22	2.3	23	87	6	72	25	28	15	30	1.96
69916343--69916451	27	4.1	26	87	5	146	38	22	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69916578--69916629	27	1.9	27	84	7	70	36	15	15	32	1.89
69917834--69917939	24	4.4	23	88	7	140	18	36	5	38	1.75
69924200--69924310	27	4.2	26	79	9	107	40	23	20	15	1.90
69925697--69925791	12	7.9	12	65	9	50	21	37	6	34	1.79
69925693--69925798	24	4.4	23	90	7	149	18	37	5	37	1.75
69941202--69941278	28	2.7	29	82	4	95	29	29	10	29	1.90
69944727--69944805	41	1.9	41	94	0	140	35	20	7	36	1.81
69944989--69945089	42	2.4	42	75	6	105	34	26	15	22	1.95
69945150--69945234	37	2.3	37	85	2	118	24	29	17	28	1.97
69949210--69949330	46	2.6	46	85	5	163	27	18	30	23	1.98
69954587--69954627	16	2.6	16	88	7	57	43	2	31	21	1.66
69956459--69956522	29	2.2	29	82	0	74	20	7	17	54	1.67
69956474--69956540	29	2.3	28	73	16	64	22	10	14	52	1.72
69957575--69957636	27	2.3	27	83	8	83	59	4	1	33	1.28
69961725--69961764	13	3.2	13	82	3	55	20	15	17	47	1.83
69973971--69974061	46	2.0	46	100	0	182	43	18	6	30	1.76
69974762--69974819	29	2.0	30	93	3	100	20	43	0	36	1.52
69975041--69975072	16	1.9	17	93	6	57	28	31	0	40	1.57
69975199--69975245	17	2.8	17	79	20	62	36	2	6	55	1.37
69976819--69976858	17	2.4	17	82	0	53	17	15	15	52	1.75
69977576--69977605	14	2.1	14	93	0	51	46	36	0	16	1.47
69994929--69995050	45	2.7	45	88	2	174	24	14	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70004380--70004720	27	12.6	27	77	5	224	43	19	8	29	1.80
70004577--70004661	26	3.1	27	78	11	86	52	14	4	28	1.61
70004964--70005080	41	2.9	41	93	0	189	21	21	30	26	1.98
70005227--70005277	22	2.3	21	80	9	57	21	23	21	33	1.97
70008443--70008562	53	2.2	52	84	7	150	50	15	5	28	1.68
70008280--70008603	27	12.0	27	80	7	239	42	20	8	28	1.82
70009645--70009705	21	2.9	21	92	0	104	34	18	13	34	1.89
70009645--70009704	10	5.8	10	82	7	75	35	18	13	33	1.89
70009741--70009789	25	2.0	25	83	0	62	28	14	20	36	1.92
70011580--70011698	41	2.9	41	92	0	202	23	25	26	24	2.00
70011841--70011893	22	2.4	22	72	12	54	18	24	26	30	1.98
70016628--70016696	25	2.8	24	82	8	84	27	17	28	26	1.97
70016723--70016795	25	2.9	25	81	4	85	39	16	24	19	1.91
70022650--70022696	21	2.2	21	92	0	76	59	14	12	12	1.61
70022650--70022706	21	2.7	21	86	0	60	56	14	15	14	1.68
70024700--70024778	27	3.0	26	85	7	88	34	22	24	18	1.97
70026364--70026419	26	2.2	26	96	0	103	37	25	7	30	1.82
70031616--70031721	27	3.9	27	86	9	137	34	21	24	18	1.96
70033284--70033339	26	2.2	26	96	0	103	37	25	7	30	1.82
70036664--70036697	15	2.3	15	90	10	52	35	0	11	52	1.38
70036765--70036878	45	2.5	46	82	2	124	43	19	16	20	1.88
70036850--70036967	46	2.6	46	93	0	191	47	11	21	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70038749--70038800	25	2.1	25	96	0	95	46	9	3	40	1.55
70039184--70039240	20	2.8	20	83	0	69	50	17	14	17	1.77
70043610--70043665	26	2.2	26	96	0	103	37	25	7	30	1.82
70048881--70048986	27	3.9	27	85	9	128	34	22	24	17	1.96
70050567--70050622	26	2.2	26	96	0	103	37	25	7	30	1.82
70053949--70053982	15	2.3	15	90	10	52	35	0	11	52	1.38
70054051--70054164	45	2.5	46	82	2	124	43	19	16	20	1.88
70054136--70054253	46	2.6	46	93	0	191	47	11	21	19	1.81
70056036--70056087	25	2.1	25	96	0	95	46	9	3	40	1.55
70056472--70056528	20	2.8	20	83	0	69	50	17	14	17	1.77
70057434--70057480	11	4.6	10	82	7	51	61	0	17	21	1.34
70057436--70057476	11	3.8	11	83	3	57	58	0	17	24	1.38
70061868--70061899	16	2.0	16	93	0	55	56	0	9	34	1.32
70063822--70063853	2	16.0	2	100	0	64	50	0	0	50	1.00
70063983--70064040	30	1.9	29	83	13	73	41	5	5	48	1.48
70069652--70069867	46	4.6	46	76	12	165	28	19	28	23	1.98
70071599--70071636	18	2.1	18	95	0	67	39	10	18	31	1.85
70072114--70072169	25	2.2	25	81	12	62	23	7	28	41	1.80
70073190--70073227	17	2.3	17	90	4	60	73	2	10	13	1.19
70084914--70084945	12	2.6	13	90	9	50	50	25	6	18	1.70
70092070--70092101	12	2.6	13	90	9	50	50	25	6	18	1.70
70092550--70092662	42	2.7	43	79	6	124	26	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70095168--70095236	30	2.3	30	100	0	138	18	24	36	20	1.95
70097094--70097134	15	2.7	15	96	3	73	34	19	7	39	1.80
70101568--70101654	21	4.0	23	80	10	92	14	21	25	37	1.92
70107402--70107443	21	2.0	22	90	4	68	30	0	28	40	1.57
70109826--70109952	46	2.8	44	82	9	157	25	29	18	25	1.98
70134317--70134363	8	5.9	8	90	5	60	0	12	0	87	0.55
70139793--70139880	44	2.0	44	100	0	176	20	27	6	45	1.76
70140697--70140920	46	4.8	47	77	12	180	26	20	29	23	1.99
70163991--70164078	40	2.3	38	84	7	122	36	31	13	18	1.90
70164001--70164076	40	1.9	40	91	0	125	35	31	14	18	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343