genome.fa.s10.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  146  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48478494--48478603	54	2.0	54	91	0	175	27	11	11	49	1.74
48481634--48481854	104	2.1	104	85	0	307	28	23	14	33	1.94
48481820--48481894	36	2.1	36	89	0	114	26	21	16	36	1.94
48481716--48481994	140	2.0	140	87	1	398	29	23	13	32	1.93
48482282--48482316	18	1.9	18	88	0	52	22	14	31	31	1.94
48485195--48485232	18	2.0	20	90	10	62	31	2	7	57	1.41
48485221--48485291	33	2.2	31	77	18	74	30	0	5	63	1.17
48485266--48485311	21	2.2	21	92	0	74	28	0	4	67	1.10
48488417--48488559	76	1.9	76	88	2	216	44	13	6	34	1.70
48488414--48488555	39	3.7	40	71	18	120	43	14	6	35	1.70
48489220--48489274	21	2.6	22	77	8	60	56	25	1	16	1.50
48493725--48493856	49	2.6	50	79	10	135	25	19	25	28	1.99
48523095--48523181	32	2.7	31	87	10	97	32	6	21	39	1.80
48524660--48524712	26	2.0	26	85	7	72	37	22	13	26	1.91
48527235--48527268	10	3.4	10	91	0	50	41	2	8	47	1.50
48527593--48527637	19	2.3	20	84	3	56	26	8	6	57	1.54
48536390--48536502	23	5.0	23	84	5	115	22	19	19	38	1.93
48536395--48536502	46	2.4	44	83	4	128	21	19	19	39	1.92
48536674--48536713	18	2.2	19	86	4	55	47	0	22	30	1.52
48537369--48537437	22	3.1	22	77	8	77	20	23	15	40	1.91
48540365--48540725	178	2.0	178	97	0	686	34	8	16	39	1.80
48540970--48541017	20	2.5	20	86	10	64	25	6	2	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48544675--48544721	15	3.3	14	76	11	51	21	4	0	74	0.99
48552678--48552834	46	3.5	44	74	20	132	29	18	28	24	1.98
48552772--48552882	46	2.5	44	85	7	143	28	19	27	24	1.99
48554818--48555102	27	10.6	27	81	4	292	38	21	10	29	1.87
48555060--48555452	27	14.6	27	88	1	572	32	20	21	24	1.98
48555901--48556003	6	16.8	6	72	15	68	20	15	15	48	1.81
48555889--48555958	31	2.3	31	89	0	104	21	14	15	48	1.80
48561646--48561748	40	2.5	39	78	7	107	27	28	15	29	1.96
48561742--48561850	43	2.5	43	84	0	128	25	31	19	23	1.98
48566684--48566803	44	2.8	44	79	5	129	28	26	20	25	1.99
48569849--48569993	50	2.9	50	85	1	184	28	28	17	25	1.98
48570757--48571094	168	2.0	168	99	0	667	31	14	21	31	1.93
48573272--48573774	47	10.6	49	92	4	811	32	8	29	29	1.87
48573272--48573774	96	5.3	96	94	3	849	32	8	29	29	1.87
48581262--48581360	44	2.3	43	80	5	101	27	25	18	29	1.98
48584194--48584326	47	2.8	46	81	13	164	27	22	27	21	1.99
48584196--48584402	94	2.2	94	83	8	260	27	19	28	24	1.98
48586001--48586147	25	5.9	25	77	9	131	19	27	20	32	1.96
48585966--48586126	50	3.2	48	81	6	146	18	26	20	34	1.96
48586039--48586147	49	2.2	51	83	9	145	21	30	19	29	1.97
48586039--48586161	25	5.0	25	78	7	74	20	29	19	30	1.97
48586030--48586171	74	1.9	74	80	5	162	21	28	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48588151--48588264	40	2.8	40	87	1	156	26	10	12	50	1.72
48596228--48596310	43	1.9	43	85	0	112	18	15	31	34	1.92
48600476--48600593	25	4.7	25	73	14	82	18	27	18	35	1.94
48600466--48600599	50	2.7	49	79	10	146	20	26	17	35	1.94
48600976--48601907	467	2.0	467	96	0	1740	27	11	19	41	1.86
48603661--48603690	10	3.1	10	95	4	53	43	16	10	30	1.81
48604759--48604827	3	24.7	3	70	24	53	68	0	28	2	1.04
48604783--48604868	5	17.2	5	77	9	61	69	0	26	3	1.04
48605811--48605839	15	1.9	15	100	0	58	58	0	0	41	0.98
48606982--48607019	19	2.0	20	85	15	53	39	23	0	36	1.55
48607244--48607412	46	3.7	45	78	12	182	29	27	20	23	1.98
48607246--48607435	46	4.1	45	70	18	122	28	27	20	23	1.99
48607841--48607900	30	2.0	30	90	0	93	30	25	8	36	1.85
48608720--48608763	19	2.4	19	85	7	56	40	9	0	50	1.34
48612026--48612462	50	8.8	50	84	4	530	27	18	29	24	1.98
48612026--48612512	150	3.3	148	83	5	556	27	18	29	24	1.98
48613213--48613246	17	2.0	17	100	0	68	41	5	23	29	1.78
48617294--48617471	27	6.6	27	80	3	169	29	26	15	28	1.96
48619567--48619621	27	2.0	27	82	6	67	25	25	0	49	1.51
48620770--48620803	16	2.1	16	94	0	59	35	8	0	55	1.31
48623163--48623252	44	2.0	44	91	0	144	36	8	4	50	1.54
48623688--48623732	17	2.6	17	86	13	58	55	0	2	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48625734--48625778	20	2.3	20	96	3	83	44	8	20	26	1.80
48632088--48632226	70	2.0	70	97	0	260	50	10	14	25	1.74
48632413--48632510	48	2.0	48	100	0	196	50	10	20	19	1.76
48636488--48636626	69	2.0	69	97	0	260	26	13	32	27	1.94
48645548--48645644	43	2.3	43	87	3	124	43	15	15	25	1.86
48645649--48645774	21	5.9	21	70	17	71	43	12	14	29	1.82
48645587--48645731	65	2.2	65	80	6	161	41	11	18	28	1.86
48645693--48645764	22	3.3	22	77	11	76	44	11	12	31	1.77
48645650--48645783	43	3.1	42	80	6	144	43	12	14	29	1.83
48650549--48650594	6	7.5	6	87	2	65	69	0	15	15	1.19
48652293--48652348	28	2.0	28	96	0	103	26	17	23	32	1.97
48667201--48667244	20	2.2	20	95	0	79	29	6	6	56	1.51
48670348--48670386	19	2.0	20	85	10	53	28	0	2	69	1.02
48680726--48680820	27	3.5	27	80	5	102	42	22	7	28	1.80
48680825--48680913	27	3.3	27	95	0	160	31	24	7	35	1.84
48680825--48680975	54	2.8	54	82	0	158	37	23	7	31	1.82
48680865--48681031	27	6.2	27	81	0	109	38	23	8	29	1.84
48680874--48681004	54	2.4	54	83	0	145	40	22	6	29	1.80
48680933--48681058	54	2.3	55	83	5	150	40	23	10	25	1.86
48680961--48681058	27	3.7	26	87	8	117	37	23	12	26	1.90
48680962--48681158	81	2.4	82	80	5	206	35	20	17	26	1.94
48681016--48681157	27	5.3	27	87	0	194	34	19	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48681552--48681631	31	2.6	31	91	0	124	18	18	15	47	1.83
48681552--48681642	6	14.8	6	78	13	96	18	18	14	48	1.81
48687577--48687620	20	2.3	20	81	18	58	45	0	4	50	1.22
48687952--48687984	17	1.9	17	93	0	57	75	0	24	0	0.80
48687953--48687987	13	2.8	13	91	4	54	74	0	25	0	0.82
48689973--48690021	22	2.3	20	79	6	53	24	28	30	16	1.96
48692124--48692208	27	3.2	26	81	8	98	15	23	22	38	1.92
48699956--48700067	27	4.1	27	84	7	138	15	24	23	37	1.93
48699956--48700067	54	2.1	54	88	3	163	15	24	23	37	1.93
48701228--48701265	16	2.3	16	90	4	58	15	28	21	34	1.94
48704352--48704546	55	3.6	53	77	10	189	36	17	23	21	1.94
48704359--48704559	108	1.8	110	86	6	293	35	17	23	22	1.95
48704798--48704828	16	1.9	16	93	0	53	41	0	22	35	1.54
48709269--48709376	27	4.0	27	91	0	162	32	19	21	26	1.97
48709281--48709402	54	2.3	54	81	9	144	35	19	18	27	1.95
48709361--48709428	26	2.6	27	85	4	93	41	19	10	29	1.84
48709412--48709749	27	12.5	26	78	10	261	40	17	9	32	1.82
48709396--48709737	54	6.3	53	79	9	309	39	17	10	32	1.83
48709386--48709737	81	4.3	79	78	7	325	39	17	10	32	1.83
48709980--48710103	41	3.0	41	84	4	162	22	20	28	28	1.99
48710245--48710306	22	2.8	22	78	9	72	17	22	24	35	1.95
48718280--48718546	46	5.7	49	75	13	178	28	19	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48732932--48732989	29	2.0	29	96	0	107	43	17	20	18	1.89
48736570--48736690	46	2.6	47	88	2	172	36	11	24	27	1.90
48736669--48736865	54	3.6	54	83	6	238	36	17	23	22	1.95
48739143--48739178	17	2.1	17	100	0	72	22	16	19	41	1.90
48739146--48739188	17	2.7	16	89	7	61	23	18	18	39	1.92
48752155--48752334	92	2.0	92	96	0	333	31	24	17	26	1.97
48755850--48755885	10	3.6	10	84	0	54	36	19	25	19	1.95
48755850--48755888	20	2.0	20	94	0	69	38	17	25	17	1.92
48755852--48755895	20	2.2	20	87	0	61	38	18	22	20	1.93
48758273--48758490	40	5.5	40	86	2	289	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343