genome.fa.s10.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  127  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42480761--42480908	79	1.9	80	88	4	228	25	21	28	25	1.99
42480761--42480908	40	3.7	40	89	5	228	25	21	28	25	1.99
42480761--42480931	79	2.2	79	85	6	222	26	21	27	24	1.99
42484619--42484790	93	1.8	93	92	0	290	28	29	20	21	1.98
42484620--42484787	46	3.6	46	77	10	180	29	28	20	21	1.98
42491198--42491375	27	6.6	27	82	6	198	26	15	28	29	1.96
42491199--42491354	82	1.9	81	87	6	226	26	15	28	29	1.96
42491195--42491375	82	2.2	81	82	4	222	26	15	28	29	1.96
42499388--42499565	27	6.6	27	83	3	205	26	15	28	29	1.96
42499389--42499544	82	1.9	81	88	3	233	26	15	28	29	1.96
42499385--42499565	82	2.2	81	83	2	229	27	15	27	29	1.96
42503275--42503446	93	1.8	93	92	0	290	28	29	20	21	1.98
42503276--42503443	46	3.6	46	77	10	180	29	28	20	21	1.98
42512559--42512596	19	2.0	19	94	0	67	34	10	23	31	1.89
42517154--42517240	18	4.8	18	82	0	111	37	11	24	26	1.89
42517154--42517240	36	2.4	36	90	0	129	37	11	24	26	1.89
42524581--42524661	18	4.5	18	80	0	72	43	8	20	27	1.81
42524559--42524661	36	2.9	36	82	2	100	43	9	18	28	1.81
42527472--42527549	23	3.3	23	87	5	104	30	20	24	24	1.98
42527448--42527550	46	2.2	46	80	10	111	32	19	23	25	1.98
42533443--42533500	17	3.2	18	80	7	73	22	20	13	43	1.87
42537945--42538385	47	9.4	47	94	0	702	29	30	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42538114--42538236	22	5.3	22	63	18	70	26	30	9	33	1.89
42538302--42538377	22	3.3	22	64	10	62	28	31	10	28	1.90
42542142--42542413	40	6.8	40	90	0	418	26	28	20	24	1.99
42542299--42542361	17	3.0	23	60	26	57	23	28	22	25	1.99
42544079--42544472	47	8.4	47	90	0	572	29	30	7	32	1.85
42544295--42544370	22	3.3	22	66	10	62	26	28	10	34	1.90
42547679--42547776	27	3.5	28	90	2	135	26	13	28	31	1.94
42547707--42547789	27	3.0	27	87	5	96	30	12	25	32	1.92
42547679--42547790	28	4.0	27	83	6	98	28	12	25	33	1.92
42555729--42555826	27	3.5	28	88	2	126	26	13	27	32	1.93
42555757--42555840	27	3.0	27	87	5	96	29	11	25	33	1.91
42557361--42557406	24	1.9	24	82	8	58	41	23	10	23	1.86
42560688--42560735	22	2.1	24	85	14	66	54	0	6	39	1.26
42572542--42572694	65	2.4	65	79	0	162	25	18	18	37	1.94
42572826--42572877	26	2.0	26	85	7	70	15	9	23	51	1.72
42575685--42575720	18	2.0	18	88	0	54	33	11	0	55	1.35
42577609--42577823	46	4.6	45	76	13	170	24	29	20	25	1.99
42580059--42580280	40	5.6	40	89	1	331	23	22	26	28	1.99
42582806--42582835	16	1.9	15	93	6	51	33	23	0	43	1.54
42583047--42583475	50	8.5	50	74	6	267	31	24	17	27	1.97
42583039--42583433	151	2.6	151	85	1	542	30	24	17	27	1.98
42604232--42604262	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42604229--42604268	20	2.0	20	85	0	53	37	22	0	40	1.54
42604462--42604698	55	4.5	53	80	8	234	21	24	18	35	1.95
42604501--42604698	108	1.8	110	89	4	312	22	25	17	34	1.96
42611384--42611423	20	2.0	20	90	0	62	40	20	0	40	1.52
42611654--42611863	55	3.9	55	75	8	189	21	26	18	33	1.97
42632556--42632719	58	2.9	56	83	9	206	29	14	29	26	1.95
42632568--42632730	29	5.7	28	82	8	179	28	15	30	25	1.96
42634462--42634562	29	3.6	29	75	2	98	29	16	25	27	1.97
42648338--42648786	47	9.6	47	95	0	765	29	29	7	33	1.85
42652575--42653239	223	3.0	223	96	1	1230	24	10	30	34	1.89
42655672--42655765	28	3.5	26	78	8	89	28	14	27	28	1.96
42663026--42663090	26	2.4	28	82	5	80	27	16	24	30	1.97
42662996--42663089	28	3.5	26	79	5	80	27	18	24	29	1.98
42666029--42666122	42	2.2	43	84	5	120	34	25	15	24	1.95
42666011--42666167	43	3.7	43	76	12	135	33	26	16	23	1.96
42668135--42668223	44	2.0	44	82	2	108	22	12	28	37	1.90
42675018--42675094	26	3.0	26	84	0	109	37	25	20	15	1.92
42690257--42690625	50	7.7	50	72	11	272	27	18	28	24	1.98
42690251--42690636	95	4.1	95	83	3	490	27	18	28	25	1.98
42690251--42690636	190	2.0	191	87	1	560	27	18	28	25	1.98
42696025--42696164	69	2.0	69	100	0	280	43	7	19	30	1.77
42696946--42697118	45	3.7	45	76	7	184	25	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42696990--42697143	50	3.2	50	77	9	192	27	20	30	22	1.98
42696941--42697143	95	2.1	95	93	0	352	26	19	29	24	1.98
42699766--42699798	11	3.1	11	86	8	50	63	0	27	9	1.24
42702612--42702650	16	2.4	16	91	0	60	48	20	20	10	1.78
42702865--42702977	29	3.9	29	81	5	122	24	7	32	34	1.85
42703104--42703304	99	2.0	99	98	0	384	21	18	26	33	1.96
42724543--42724572	13	2.4	13	94	5	53	23	16	0	60	1.36
42726519--42726646	28	4.5	28	88	2	175	28	12	25	32	1.92
42726519--42726646	57	2.2	57	88	2	186	28	12	25	32	1.92
42735779--42735861	27	3.1	27	77	16	91	37	19	13	30	1.90
42735853--42736047	27	7.2	27	86	0	264	29	23	8	38	1.85
42743395--42743570	46	3.8	47	77	10	191	19	20	30	30	1.97
43022246--43022321	38	2.0	38	100	0	152	31	13	23	31	1.93
43023504--43023648	40	3.6	40	84	4	184	24	24	26	24	2.00
43028034--43028094	30	2.0	30	87	0	86	29	24	8	37	1.84
43033777--43033869	39	2.4	39	87	3	134	32	18	25	23	1.97
43033862--43033989	39	3.3	39	92	0	220	20	22	28	28	1.98
43033777--43033996	78	2.8	79	81	7	234	25	20	27	26	1.99
43038674--43038766	39	2.4	39	87	3	134	31	18	25	24	1.98
43038759--43038925	39	4.3	39	90	0	262	20	23	28	28	1.99
43038674--43038925	78	3.2	78	81	5	208	24	21	27	26	1.99
43041300--43041455	85	1.8	85	81	2	197	26	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43046176--43046532	180	2.0	182	88	1	538	26	11	28	33	1.91
43048147--43048260	27	4.2	27	89	2	149	40	21	7	30	1.81
43048239--43048513	27	10.2	27	82	3	302	30	20	6	42	1.76
43048811--43048869	27	2.2	26	84	3	73	20	22	20	37	1.95
43048781--43048984	98	2.1	98	96	0	372	20	25	21	32	1.98
43049087--43049147	6	10.0	6	79	10	70	18	16	14	50	1.78
43049081--43049175	43	2.2	43	84	3	129	20	17	12	49	1.79
43051914--43052075	45	3.6	45	88	4	247	22	20	28	28	1.99
43059739--43059899	45	3.6	44	84	4	214	22	22	26	28	1.99
43061681--43061722	20	2.1	20	90	0	66	21	9	23	45	1.81
43062787--43063000	47	4.6	47	77	10	190	27	19	29	23	1.98
43062785--43063000	95	2.3	91	84	4	281	27	19	29	24	1.98
43073763--43073803	21	2.0	21	100	0	82	43	14	2	39	1.59
43075649--43075677	14	2.0	15	93	6	51	27	0	20	51	1.47
43080034--43080830	27	29.5	27	84	3	904	28	21	8	41	1.82
43080868--43081024	27	5.9	27	85	5	194	38	21	9	30	1.85
43081012--43081209	27	7.3	26	86	6	270	34	19	21	24	1.96
43081013--43081209	54	3.6	54	89	2	306	34	19	21	24	1.96
43081633--43081707	31	2.4	31	84	0	96	20	14	14	50	1.77
43084271--43084452	40	4.6	39	80	11	194	24	27	22	25	2.00
43084271--43084453	39	4.6	39	81	8	194	25	27	22	25	2.00
43084271--43084453	78	2.3	80	84	7	232	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43093050--43093234	79	2.3	82	83	7	229	24	27	22	24	2.00
43093031--43093234	40	5.1	40	81	8	229	24	27	22	25	2.00
43104444--43104614	93	1.8	93	91	0	279	21	21	28	28	1.98
43104448--43104619	46	3.7	46	75	13	181	22	20	27	29	1.99
43111957--43112129	46	3.7	46	77	14	185	21	19	28	31	1.97
43111954--43112124	93	1.8	93	91	2	281	21	19	29	30	1.97
43115442--43115567	46	2.7	46	95	0	225	20	23	26	29	1.99
43119584--43119804	40	5.6	40	88	2	304	25	26	23	23	2.00
43125537--43125707	46	3.7	46	73	17	174	22	19	26	31	1.97
43125532--43125701	93	1.8	93	91	2	279	21	18	27	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343