Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  292  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96252040--96254491
192
12.8
192
97
2
4624
29
13
20
35
1.92
96254633--96254666
16
2.1
17
88
5
52
17
11
5
64
1.45
96254572--96254830
91
2.9
88
82
10
309
26
17
18
37
1.93
96254930--96255147
54
4.1
55
88
8
324
28
16
17
37
1.92
96255389--96255422
14
2.4
15
90
9
54
70
2
0
26
1.01
96255418--96255514
30
3.3
30
85
5
117
31
23
3
41
1.70
96255415--96255552
59
2.4
59
78
6
147
33
22
2
41
1.69
96255907--96255975
3
23.0
3
77
16
56
69
0
30
0
0.89
96255905--96255935
10
3.1
10
100
0
62
61
0
38
0
0.96
96255918--96255976
24
2.5
24
81
10
68
72
0
27
0
0.84
96256236--96256305
11
6.3
11
83
3
77
80
0
20
0
0.72
96256240--96256303
14
4.4
14
69
19
51
81
0
18
0
0.70
96256613--96256651
21
1.9
21
84
5
53
53
10
2
33
1.48
96256836--96256878
22
2.0
22
86
8
63
53
16
4
25
1.62
96256895--96257000
35
3.1
34
85
4
135
31
13
8
47
1.72
96256885--96257029
35
4.2
34
74
12
98
26
12
12
48
1.76
96256874--96257058
17
10.6
17
76
9
149
30
11
10
46
1.75
96258319--96258392
38
1.9
37
83
5
94
4
28
0
67
1.09
96259510--96259567
23
2.7
21
76
10
71
41
0
13
44
1.44
96264040--96264080
6
6.5
6
83
10
55
78
2
0
19
0.87
96264032--96264075
20
2.1
21
91
4
72
70
2
0
27
0.99
96264043--96264082
20
2.0
20
90
0
62
75
5
0
20
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96264100--96264158
9
6.6
9
86
7
84
25
8
22
44
1.81
96264839--96264884
17
2.6
17
96
3
83
67
28
0
4
1.10
96264834--96264884
18
2.8
18
91
8
86
62
33
0
3
1.13
96269154--96269201
18
2.6
19
83
12
64
22
8
0
68
1.16
96270933--96271073
75
1.9
75
92
2
239
29
21
14
34
1.93
96271012--96271136
62
2.0
62
95
0
223
30
22
12
35
1.90
96273539--96273691
76
2.0
75
89
3
236
27
22
16
33
1.95
96273767--96273835
18
3.4
19
75
22
52
57
1
0
40
1.07
96273798--96273843
22
2.0
24
83
8
60
47
4
0
47
1.21
96273766--96273868
43
2.5
43
78
6
106
55
2
0
41
1.15
96273797--96273895
40
2.4
41
80
9
105
52
3
1
43
1.23
96277883--96277916
17
2.0
17
88
11
52
41
0
5
52
1.25
96279258--96279534
100
2.8
100
92
1
475
40
10
10
38
1.75
96279566--96279602
15
2.4
15
90
4
56
40
2
0
56
1.13
96285081--96285114
17
2.0
17
88
0
50
23
14
5
55
1.61
96286187--96286227
18
2.4
17
87
4
55
43
2
2
51
1.28
96290265--96290320
16
3.5
16
92
0
85
28
26
7
37
1.83
96290682--96290719
19
2.0
20
85
10
53
39
0
2
57
1.12
96290739--96290780
10
4.2
10
79
8
50
21
0
2
76
0.90
96291434--96291518
41
2.1
41
91
4
136
38
5
17
37
1.74
96293639--96293673
17
2.0
18
88
5
54
45
11
25
17
1.81
96306959--96306996
19
2.0
19
94
0
67
34
10
23
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96311448--96311494
15
3.1
15
84
0
67
57
0
12
29
1.36
96318232--96318261
14
2.1
14
100
0
60
13
16
6
63
1.50
96322116--96322150
16
2.2
16
94
0
61
34
28
5
31
1.81
96326390--96326470
29
2.8
28
76
9
67
62
1
3
32
1.20
96326411--96326488
19
4.1
19
70
18
56
64
2
3
29
1.25
96326519--96326582
19
3.2
20
73
13
60
60
3
7
28
1.39
96326738--96326781
18
2.4
19
92
3
72
43
4
0
52
1.22
96326758--96326821
26
2.4
27
80
15
80
35
3
0
60
1.12
96331652--96331690
15
2.7
15
84
4
53
53
0
2
43
1.14
96337956--96337999
15
3.0
15
90
3
63
54
0
15
29
1.42
96342234--96342352
60
2.0
60
90
3
186
35
0
12
52
1.40
96342636--96342688
27
2.0
27
84
0
70
24
28
26
20
1.99
96342745--96342792
19
2.4
20
82
6
62
62
2
0
35
1.07
96354936--96354973
16
2.4
16
87
12
53
47
7
0
44
1.32
96362778--96362954
89
2.0
89
96
0
327
27
20
10
41
1.85
96366013--96366042
7
4.3
7
95
0
51
43
0
10
46
1.37
96366008--96366042
14
2.5
14
85
0
52
45
0
11
42
1.40
96366555--96366597
15
2.6
17
78
17
54
51
0
2
46
1.13
96366600--96366700
28
3.5
28
71
4
76
62
1
5
29
1.30
96366599--96366723
9
13.4
9
70
17
69
60
2
5
32
1.33
96370217--96370287
16
4.4
16
94
0
124
30
23
7
38
1.82
96373248--96373302
25
2.2
25
90
0
83
40
14
7
38
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96377824--96377876
25
2.1
25
89
0
79
39
16
5
37
1.73
96382660--96382693
15
2.1
17
89
10
54
61
2
2
32
1.26
96390378--96390415
11
3.5
11
82
17
53
44
0
55
0
0.99
96390659--96390781
60
2.0
61
93
3
212
21
31
21
26
1.98
96394121--96394152
16
1.9
17
93
6
57
71
3
6
18
1.20
96401191--96401248
27
2.1
27
96
0
107
36
17
5
41
1.72
96410339--96410379
22
2.0
21
85
9
57
43
7
0
48
1.30
96414582--96414625
22
2.0
22
86
0
61
31
2
0
65
1.05
96417830--96418097
132
2.0
133
97
0
511
34
36
10
19
1.85
96419926--96419956
8
3.9
8
100
0
62
74
25
0
0
0.82
96421121--96421206
31
2.9
30
77
10
95
39
11
8
40
1.71
96421122--96421179
29
1.9
30
86
6
82
41
10
8
39
1.70
96422089--96422113
4
6.2
4
100
0
50
24
0
0
76
0.80
96423284--96423308
6
4.2
6
100
0
50
16
0
68
16
1.22
96428030--96428100
35
2.0
36
84
13
94
36
5
0
57
1.22
96428156--96428180
3
8.3
3
100
0
50
36
0
0
64
0.94
96430191--96430245
26
2.1
26
89
0
83
34
18
7
40
1.78
96430588--96430621
3
11.7
3
93
6
61
32
0
0
67
0.91
96431865--96431894
11
2.6
12
94
5
53
23
0
0
76
0.78
96431895--96431937
20
2.2
19
84
12
52
69
4
0
25
1.07
96432124--96432186
20
3.2
19
76
17
65
73
4
11
11
1.24
96434860--96434905
3
15.3
3
82
8
58
32
4
0
63
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96435033--96435073
7
6.0
7
78
16
50
39
0
2
58
1.11
96439822--96439877
26
2.2
26
96
3
105
33
14
7
44
1.72
96443342--96443377
18
2.0
18
88
0
54
75
5
0
19
1.00
96444823--96444869
21
2.2
21
96
0
85
0
57
21
21
1.41
96450421--96450473
27
2.0
27
96
0
97
30
1
22
45
1.63
96450405--96450476
9
7.7
9
78
9
81
29
1
23
45
1.61
96450516--96450969
241
1.9
241
97
0
854
32
14
18
34
1.91
96451354--96451419
27
2.4
27
94
0
114
39
13
7
39
1.73
96452184--96452213
14
2.2
13
94
5
51
36
13
0
50
1.42
96453702--96453739
19
2.0
19
94
0
67
21
23
31
23
1.98
96453704--96453744
19
2.2
19
86
0
55
26
19
34
19
1.96
96453757--96453808
19
2.7
20
82
11
72
32
0
40
26
1.57
96454679--96454762
26
3.2
26
96
0
150
33
4
25
36
1.77
96458731--96458903
41
4.2
41
86
6
219
23
17
22
36
1.94
96460302--96460354
24
2.1
26
86
6
74
52
3
1
41
1.30
96460969--96461005
16
2.3
16
85
0
56
40
5
21
32
1.76
96461173--96461310
60
2.4
57
85
4
168
50
3
0
44
1.24
96461810--96461843
15
2.3
15
100
0
68
32
26
11
29
1.92
96469157--96469197
19
2.0
21
90
9
68
68
0
2
29
1.03
96469166--96469198
15
2.1
17
88
11
52
69
0
0
30
0.88
96471389--96471571
46
4.0
46
94
0
294
24
31
9
34
1.87
96471545--96471643
47
2.1
47
81
3
119
27
28
10
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96481290--96481377
34
2.6
34
77
1
104
42
2
1
54
1.20
96488065--96488109
19
2.4
19
88
7
65
26
22
6
44
1.77
96494188--96494227
6
6.7
6
83
11
55
82
0
0
17
0.67
96495704--96495745
22
1.9
22
95
0
75
45
23
11
19
1.83
96505534--96505581
24
2.0
24
95
0
87
35
8
25
31
1.85
96506971--96507097
44
2.9
43
83
3
155
29
16
23
29
1.96
96507023--96507148
44
2.8
44
79
2
126
31
17
23
26
1.97
96507205--96507364
44
3.6
44
78
6
155
30
20
19
29
1.97
96509178--96509210
16
2.1
15
94
5
57
18
0
6
75
1.00
96511836--96511866
3
10.3
3
100
0
62
0
35
0
64
0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343