genome.fa.s10.2.7.7.80.10.50.1000.336.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  336  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107620448--107620502	21	2.6	21	83	11	60	45	1	1	50	1.22
107627233--107627325	18	5.2	18	89	0	132	33	17	22	26	1.96
107632959--107633026	31	2.2	31	89	0	100	51	23	5	19	1.68
107640124--107640251	26	4.9	26	98	0	229	32	5	25	36	1.79
107641870--107641975	27	3.9	27	84	9	126	17	24	20	36	1.94
107641868--107641980	54	2.1	54	85	3	147	17	23	20	38	1.93
107645959--107646068	26	4.2	26	96	0	175	34	5	24	35	1.79
107650824--107650951	64	2.0	64	83	3	159	28	20	17	34	1.95
107652787--107652829	22	2.0	22	86	9	61	32	4	0	62	1.15
107653088--107653217	29	4.5	28	71	21	74	31	4	2	61	1.29
107653223--107653271	23	2.1	23	88	0	71	24	6	4	65	1.33
107653469--107653514	22	2.1	22	83	0	56	26	10	2	60	1.41
107653504--107653610	51	2.1	51	81	6	119	34	13	0	52	1.40
107653642--107653670	3	9.7	3	100	0	58	34	0	0	65	0.93
107653827--107653856	12	2.5	12	94	0	51	30	20	3	46	1.66
107653838--107653871	13	2.4	15	90	9	54	35	11	0	52	1.38
107666154--107666372	58	3.7	59	72	19	172	34	3	6	54	1.44
107666288--107666391	23	4.4	23	78	14	88	32	2	6	57	1.39
107666415--107666476	23	2.8	22	72	16	56	30	1	9	58	1.40
107666534--107666591	23	2.5	22	86	10	80	37	1	5	55	1.33
107666534--107666580	21	2.2	21	85	11	60	38	2	4	55	1.31
107666534--107666577	23	2.0	23	95	4	81	38	2	4	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107666305--107666630	107	2.9	112	72	17	314	32	4	7	56	1.46
107666673--107666761	37	2.3	38	82	7	108	33	4	3	58	1.35
107666710--107666818	59	1.9	55	85	7	146	31	5	3	59	1.37
107666724--107666818	32	3.4	27	69	16	77	32	6	3	57	1.39
107667040--107667098	18	3.2	18	80	17	68	30	3	1	64	1.20
107668050--107668184	52	2.6	52	80	8	157	28	26	18	26	1.98
107674588--107674640	26	2.0	26	82	13	65	24	15	22	37	1.92
107676130--107676237	26	4.2	26	91	7	166	36	21	7	35	1.81
107676130--107676237	52	2.1	52	94	0	189	36	21	7	35	1.81
107678347--107678385	14	2.7	15	80	11	55	33	17	10	38	1.84
107683027--107683106	36	2.2	36	84	4	108	43	16	16	23	1.87
107685768--107685818	25	2.0	25	96	0	93	43	9	11	35	1.75
107689127--107689165	19	2.1	19	85	9	53	35	2	0	61	1.10
107693671--107693726	26	2.2	26	96	0	103	32	7	25	35	1.83
107700715--107700822	26	4.2	26	93	0	189	32	7	24	36	1.83
107703541--107703623	42	2.0	42	92	0	139	38	12	21	27	1.89
107705773--107705815	23	1.9	22	95	4	77	62	0	2	34	1.08
107705788--107705833	15	2.9	16	87	6	67	63	0	2	34	1.07
107705758--107705857	38	2.6	39	73	23	95	63	3	2	32	1.21
107705935--107705982	23	2.1	23	88	7	71	62	8	4	25	1.41
107705947--107705989	11	3.8	11	77	17	52	60	4	2	32	1.30
107706004--107706038	16	2.1	17	89	5	54	60	0	5	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107714449--107714789	165	2.0	167	88	2	499	39	13	11	35	1.81
107715459--107715498	14	2.6	16	88	11	57	57	0	0	42	0.98
107730022--107730067	17	2.9	15	78	15	56	54	6	28	10	1.60
107733318--107733405	40	2.2	40	87	0	122	57	11	2	28	1.45
107738003--107738050	19	2.5	19	74	12	53	72	4	2	20	1.11
107738488--107738595	26	4.2	26	93	0	189	32	7	24	36	1.83
107741773--107741803	12	2.6	12	100	0	62	9	25	51	12	1.70
107746674--107746781	26	4.2	26	95	0	180	33	7	23	36	1.83
107754245--107754289	14	3.2	14	83	0	54	46	33	0	20	1.51
107754730--107754772	14	3.0	15	83	10	54	39	39	0	20	1.53
107754794--107754890	49	2.0	46	88	5	140	41	24	3	30	1.70
107754861--107754905	14	3.2	14	77	0	54	48	22	0	28	1.50
107757973--107758156	27	6.8	27	87	0	206	32	22	7	38	1.81
107757946--107758129	54	3.4	54	84	0	215	32	22	7	37	1.81
107757973--107758129	81	1.9	81	90	0	251	30	22	7	39	1.81
107757973--107758131	54	2.9	54	87	0	237	30	22	6	39	1.80
107757960--107758158	81	2.5	81	83	0	245	34	21	7	37	1.81
107758108--107758415	27	11.4	27	75	11	130	39	19	10	31	1.85
107757927--107758301	54	7.0	54	77	3	173	36	21	8	33	1.84
107758122--107758327	80	2.6	82	81	5	217	41	19	9	29	1.83
107758199--107758324	54	2.4	54	85	5	159	40	19	9	30	1.84
107758469--107758560	27	3.4	27	87	3	123	34	20	25	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107759369--107759464	25	3.8	26	90	4	142	26	25	23	25	2.00
107759367--107759489	50	2.4	50	81	6	142	26	24	23	25	2.00
107759615--107759706	42	2.2	42	94	0	157	28	11	20	39	1.88
107763219--107763441	40	5.6	40	82	5	238	25	26	21	26	1.99
107773188--107773230	21	2.0	21	82	13	52	55	2	4	37	1.33
107790820--107790853	17	1.9	18	94	5	61	58	5	8	26	1.51
107791560--107791605	21	2.1	22	84	4	58	63	2	6	28	1.31
107791573--107791623	10	5.0	10	81	9	59	68	0	7	23	1.15
107793538--107793570	17	2.0	17	94	5	59	36	15	0	48	1.45
107793856--107794083	46	5.0	46	87	1	296	21	24	13	40	1.89
107797445--107797554	26	4.2	26	97	0	184	33	5	24	36	1.79
107799165--107799246	27	3.0	26	84	5	92	18	23	23	35	1.96
107810024--107810057	17	2.0	17	94	0	59	44	11	17	26	1.83
107811793--107811841	6	8.5	6	80	13	50	42	0	2	55	1.11
107811794--107811929	29	4.6	29	76	11	123	41	2	5	51	1.36
107811763--107811929	60	2.8	61	86	1	221	40	2	4	52	1.38
107812306--107812346	18	2.4	17	84	15	50	26	14	0	58	1.37
107816882--107816925	22	2.0	22	90	0	70	27	4	0	68	1.09
107816912--107816953	17	2.3	18	80	12	50	33	0	9	57	1.31
107819444--107819497	21	2.6	21	81	0	63	35	1	9	53	1.44
107824557--107824591	2	17.5	2	93	0	61	48	0	2	48	1.16
107824783--107824826	6	7.2	6	97	2	79	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107824783--107824836	18	2.9	18	89	8	65	18	1	0	79	0.82
107829593--107829652	25	2.5	24	97	2	111	56	6	0	36	1.26
107834852--107834877	13	2.0	13	100	0	52	46	7	0	46	1.31
107840464--107840539	6	12.7	6	80	15	70	14	3	0	81	0.83
107840472--107840538	16	4.2	16	75	19	68	14	4	0	80	0.86
107840465--107840539	16	4.6	15	77	9	60	14	4	0	81	0.83
107841042--107841123	18	4.8	17	69	22	64	47	2	1	48	1.22
107841103--107841151	22	2.3	21	82	3	53	55	0	0	44	0.99
107841341--107841393	21	2.5	21	93	0	88	30	37	9	22	1.86
107842245--107842475	118	2.0	118	91	0	372	23	17	30	28	1.97
107842601--107842637	10	3.7	10	92	7	58	89	0	10	0	0.49
107844284--107844396	25	4.6	23	73	14	75	19	18	13	48	1.80
107844281--107844360	31	2.6	31	81	0	106	21	17	12	48	1.80
107844281--107844408	6	20.8	6	72	13	91	19	17	12	50	1.78
107844303--107844409	43	2.5	43	84	0	142	20	18	12	48	1.80
107850455--107850495	19	2.2	19	90	0	64	51	0	9	39	1.35
107852219--107852514	39	7.5	39	97	0	538	19	23	29	28	1.98
107852564--107852646	39	2.1	39	93	0	139	18	24	30	27	1.98
107852422--107852705	142	2.0	142	97	0	541	19	19	27	33	1.96
107859863--107859887	2	12.5	2	100	0	50	48	0	0	52	1.00
107860565--107860633	34	2.0	34	88	5	104	50	8	18	21	1.74
107862221--107862321	51	2.0	51	96	0	184	38	20	7	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107869743--107869954	114	1.9	114	91	0	352	22	24	12	41	1.88
107875475--107875509	17	2.1	17	100	0	70	48	5	11	34	1.63
107885847--107885874	11	2.5	11	100	0	56	28	0	0	71	0.86
107886029--107886113	36	2.5	33	79	9	80	61	4	3	30	1.33
107886568--107886604	17	2.2	17	100	0	74	27	27	0	45	1.54
107891035--107891076	19	2.2	19	91	0	66	66	0	0	33	0.92
107895035--107895080	21	2.2	21	84	0	56	8	17	2	71	1.21
107895384--107895455	29	2.4	29	81	4	81	51	15	9	23	1.73
107898861--107898928	9	7.6	9	89	0	100	41	22	10	26	1.85
107900243--107900303	31	2.0	29	81	12	70	32	3	8	55	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343