Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  330  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105868127--105868376
89
2.8
90
89
2
387
34
21
16
28
1.95
105867641--105868304
325
2.0
325
97
0
1249
33
21
18
26
1.96
105880818--105880925
26
4.2
26
97
0
207
30
6
26
36
1.82
105890911--105890949
17
2.4
16
86
4
51
84
2
7
5
0.84
105903254--105903329
37
2.1
37
92
0
125
35
15
14
34
1.88
105907272--105907346
29
2.6
29
93
0
123
36
8
2
53
1.45
105923670--105923708
16
2.4
16
91
0
60
43
5
20
30
1.73
105923901--105923927
14
1.9
14
100
0
54
59
0
0
40
0.98
105923946--105923996
15
3.3
16
81
8
61
43
0
0
56
0.99
105924493--105924678
92
2.0
92
98
0
363
33
6
17
42
1.76
105924671--105924728
23
2.8
20
72
23
55
29
8
8
53
1.61
105925529--105925578
20
2.4
21
90
3
75
18
6
12
64
1.47
105931242--105931288
21
2.2
22
92
3
78
21
19
38
21
1.94
105936078--105936122
23
2.0
23
82
8
56
40
13
8
37
1.76
105942517--105942562
22
2.1
22
95
0
83
28
13
13
45
1.80
105944076--105944168
47
2.0
47
93
0
159
46
6
6
40
1.55
105953206--105953356
53
2.8
53
89
4
214
29
27
16
25
1.97
105959194--105959337
53
2.7
53
89
6
202
26
15
28
29
1.96
105962380--105962413
16
2.1
17
88
5
52
44
2
8
44
1.50
105963640--105963800
39
4.1
39
90
1
234
31
26
25
17
1.97
105975953--105976003
25
2.0
25
84
0
66
58
9
15
15
1.62
105979126--105979156
15
2.1
15
93
0
53
48
6
16
29
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105982077--105982104
3
9.3
3
100
0
56
32
0
0
67
0.91
105982347--105982393
24
2.0
24
82
0
58
36
4
2
57
1.30
105982371--105982412
19
2.3
19
84
8
52
35
4
0
59
1.19
105982405--105982482
25
3.1
25
75
5
68
26
3
6
62
1.37
105982534--105982574
19
2.1
20
86
4
57
29
2
0
68
1.03
105982604--105982655
15
3.6
14
70
10
50
28
1
3
65
1.21
105987884--105987925
22
1.9
22
85
9
59
23
52
9
14
1.71
105987991--105988071
23
3.4
23
74
10
74
14
1
27
56
1.46
105988032--105988080
25
2.0
25
88
8
73
20
2
24
53
1.56
105988368--105988450
3
27.3
3
73
20
59
30
3
1
65
1.17
105988371--105988450
12
6.8
12
75
12
76
30
3
1
65
1.18
105988797--105988830
2
17.0
2
87
0
50
47
2
0
50
1.16
105991265--105991311
19
2.5
19
89
6
69
27
21
8
42
1.81
105994115--105994143
8
3.6
8
100
0
58
79
20
0
0
0.74
105994108--105994155
10
4.8
10
75
10
53
83
16
0
0
0.65
105995299--105995425
66
1.9
66
96
0
236
33
19
11
35
1.88
105995529--105996041
87
5.9
85
73
9
302
35
21
22
20
1.96
105995489--105996041
43
12.7
43
72
8
332
35
21
22
20
1.96
105995578--105996041
175
2.7
175
81
4
497
35
21
21
21
1.96
105995477--105995960
132
3.7
132
84
6
651
35
21
22
20
1.96
105995483--105996057
132
4.4
132
82
7
521
35
21
22
20
1.96
105996071--105996257
68
2.8
68
90
1
286
29
22
22
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105996324--105997052
44
16.6
44
77
6
645
31
18
23
26
1.97
105996324--105997052
176
4.1
176
95
0
1287
31
18
23
26
1.97
105997392--105997418
4
6.8
4
100
0
54
77
0
0
22
0.76
105997459--105997500
22
1.9
22
85
9
59
23
52
9
14
1.71
105997598--105997674
22
3.4
22
78
20
86
15
1
25
57
1.47
105997975--105998058
27
3.0
26
73
23
66
29
3
2
64
1.23
105998394--105998427
2
17.0
2
87
0
50
47
2
0
50
1.16
106003058--106003084
14
1.9
14
100
0
54
55
7
0
37
1.28
106012755--106012805
12
3.9
14
77
12
56
25
5
5
62
1.41
106012865--106012899
17
2.1
17
88
0
52
25
0
8
65
1.21
106012914--106013013
3
33.0
3
70
9
60
32
9
1
58
1.36
106013061--106013109
12
3.9
12
76
10
53
18
12
4
65
1.41
106016652--106016713
3
20.7
3
77
6
63
32
8
0
59
1.26
106021435--106021519
41
2.1
41
100
0
170
45
4
21
28
1.71
106024601--106024751
79
1.9
79
95
1
277
31
17
5
45
1.72
106033849--106033903
26
2.2
25
90
3
83
61
1
12
23
1.40
106034220--106034252
18
1.9
17
88
11
50
54
6
3
36
1.41
106035087--106035418
71
4.7
71
77
1
342
29
17
19
33
1.95
106035111--106035415
142
2.1
142
88
2
477
30
17
19
33
1.95
106035589--106035649
30
2.0
30
100
0
122
45
3
19
31
1.66
106037890--106037921
15
2.0
17
88
11
50
46
3
0
50
1.17
106039683--106039720
13
2.9
13
85
11
51
68
0
2
28
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106050485--106050827
59
5.8
59
92
0
533
45
3
5
45
1.43
106050541--106050755
19
10.9
20
64
19
62
46
3
4
46
1.38
106050633--106050714
16
5.4
16
68
16
50
42
1
6
50
1.35
106051169--106051318
41
3.7
41
84
1
194
38
22
21
18
1.94
106051292--106051345
27
2.0
27
96
0
99
42
25
16
14
1.87
106051531--106051635
14
7.2
14
67
8
57
29
0
24
44
1.60
106051544--106051623
21
3.6
21
69
12
70
30
1
25
43
1.62
106051728--106051801
7
10.3
7
76
5
67
21
0
40
37
1.54
106051718--106051761
21
2.1
21
83
8
54
18
0
43
38
1.50
106051690--106051801
14
7.9
14
70
13
68
21
0
39
39
1.54
106051728--106051801
21
3.4
21
77
5
76
21
0
40
37
1.54
106057227--106057267
19
2.2
19
86
4
57
21
2
4
70
1.18
106057523--106057606
43
2.0
43
87
0
123
22
13
32
32
1.92
106059805--106059877
38
1.9
38
91
0
119
16
26
12
45
1.82
106060042--106060169
60
2.2
60
83
7
154
43
16
4
35
1.69
106063155--106063581
130
3.3
127
75
9
338
28
18
16
37
1.92
106064556--106064597
20
2.1
20
100
0
84
40
14
4
40
1.67
106070480--106070513
16
2.1
16
88
0
50
50
14
17
17
1.79
106073310--106073350
21
2.0
21
90
0
64
29
21
29
19
1.98
106075254--106075287
16
2.1
16
88
0
50
50
14
17
17
1.79
106077256--106077318
19
3.5
20
75
18
66
41
0
1
57
1.08
106077669--106077707
20
2.0
20
90
5
62
71
0
28
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106078779--106078869
39
2.3
39
86
0
128
21
17
18
41
1.90
106078729--106078871
45
3.3
44
75
11
152
20
18
18
42
1.89
106079129--106079215
18
4.9
18
70
6
70
35
10
12
41
1.77
106079119--106079192
36
2.1
36
84
5
96
37
9
13
39
1.77
106079192--106079244
28
1.9
27
84
3
70
35
5
13
45
1.67
106079619--106079646
14
2.0
14
100
0
56
57
0
14
28
1.38
106080428--106080657
121
1.9
121
94
0
406
29
13
12
45
1.80
106081505--106081532
14
2.0
14
100
0
56
28
14
7
50
1.69
106082770--106082815
23
2.0
23
87
8
67
32
4
0
63
1.14
106082788--106082874
14
6.1
14
69
27
51
34
3
2
59
1.27
106083161--106083195
18
1.9
18
88
0
52
34
8
8
48
1.64
106083390--106083459
35
2.0
34
83
8
88
17
10
4
68
1.34
106086887--106086994
26
4.2
26
91
0
180
35
24
8
32
1.85
106098771--106098880
43
2.6
42
82
1
121
37
23
19
20
1.94
106099059--106099323
86
3.0
86
78
9
261
35
21
21
21
1.96
106100741--106100766
4
6.5
4
100
0
52
23
0
0
76
0.78
106100741--106100775
16
2.2
16
89
0
52
20
2
2
74
1.08
106100774--106100819
23
2.0
23
87
8
67
32
4
0
63
1.14
106100792--106100878
14
6.1
14
69
27
51
34
3
2
59
1.27
106101165--106101199
18
1.9
18
88
0
52
34
8
8
48
1.64
106101390--106101440
17
3.1
16
83
8
66
17
5
1
74
1.11
106108659--106108690
16
2.0
16
93
0
55
28
12
15
43
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106112765--106112944
47
3.8
49
79
15
200
28
29
20
21
1.98
106112773--106112944
94
1.8
93
93
1
299
28
29
20
20
1.98
106115418--106115551
18
7.5
18
89
3
200
36
13
11
38
1.82
106115418--106115560
35
4.0
36
88
8
211
37
13
11
37
1.81
106115418--106115560
53
2.6
53
87
4
198
37
13
11
37
1.81
106115947--106116299
83
4.2
83
95
0
625
26
20
20
31
1.98
106116223--106116935
119
6.0
119
94
0
1183
30
18
17
33
1.94
106116927--106117106
44
4.1
44
75
8
177
27
23
16
32
1.96
106117982--106118032
12
4.3
12
80
11
61
7
11
0
80
0.90
106118003--106118041
10
3.9
10
93
6
62
7
7
0
84
0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343