genome.fa.s10.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  161  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53260787--53260830	22	2.0	22	100	0	88	50	13	13	22	1.77
53261908--53262032	27	4.9	26	71	18	93	40	14	16	28	1.88
53261964--53262005	20	2.1	20	90	0	66	40	4	19	35	1.72
53261938--53262032	47	2.0	47	89	4	147	40	12	16	30	1.86
53263456--53263480	12	2.1	12	100	0	50	24	52	0	24	1.48
53274724--53274896	46	3.7	46	77	10	190	22	19	28	30	1.98
53274721--53274891	93	1.8	93	92	0	288	22	19	29	29	1.98
53275760--53275805	21	2.2	21	84	0	56	50	2	2	45	1.26
53277371--53277435	28	2.4	28	92	2	105	27	20	16	35	1.94
53282821--53282928	56	1.9	56	87	7	157	33	24	15	26	1.95
53285069--53285125	27	2.1	27	83	6	71	24	17	24	33	1.96
53286171--53286212	16	2.6	16	100	0	84	52	0	35	11	1.38
53289328--53289487	46	3.5	46	72	17	141	31	28	18	21	1.97
53304890--53304935	23	2.1	21	84	8	56	50	21	4	23	1.67
53312450--53312632	67	2.8	64	75	8	174	29	16	30	24	1.96
53316105--53316150	23	2.1	21	88	8	65	47	21	6	23	1.74
53317821--53317860	19	2.1	19	95	0	71	30	5	17	47	1.69
53317887--53317997	40	2.8	41	77	10	104	30	17	25	27	1.97
53335741--53335947	53	3.8	53	73	5	184	38	18	23	19	1.93
53342324--53342508	40	4.7	39	81	4	210	23	27	24	24	2.00
53349437--53349642	40	5.2	40	85	3	249	24	28	23	23	2.00
53349453--53349646	79	2.5	79	85	3	257	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53357692--53357799	27	4.0	27	84	5	139	36	23	25	15	1.94
53357692--53357799	54	2.0	53	87	1	153	36	23	25	15	1.94
53359208--53359308	24	4.2	24	87	2	132	22	39	3	33	1.73
53365578--53365660	27	3.1	27	89	1	114	38	21	22	16	1.93
53368012--53368562	47	11.6	47	90	2	814	32	8	29	29	1.87
53368012--53368562	96	5.8	96	93	2	898	32	8	29	29	1.87
53371510--53371586	24	3.2	24	94	0	136	22	41	2	33	1.67
53372120--53372238	27	4.4	27	84	3	141	39	21	15	23	1.92
53374496--53374521	8	3.2	8	100	0	52	26	38	0	34	1.57
53376887--53376914	12	2.3	12	100	0	56	46	0	14	39	1.44
53381811--53381889	37	2.1	37	88	4	115	25	30	18	25	1.98
53382008--53382402	47	8.4	47	94	0	655	28	30	8	31	1.88
53398319--53398389	34	2.1	34	100	0	142	32	28	7	32	1.84
53414051--53414142	27	3.4	27	88	5	132	29	25	6	39	1.81
53414205--53414364	53	2.9	54	79	5	135	40	19	8	31	1.82
53414263--53414370	27	3.9	27	77	13	103	41	18	8	31	1.80
53415286--53415355	25	2.8	24	91	4	104	24	27	24	24	2.00
53415284--53415368	25	3.5	24	82	7	100	27	23	23	25	2.00
53415576--53415747	31	5.5	31	91	0	290	30	16	23	29	1.96
53418401--53418518	37	3.2	37	89	2	166	25	27	18	27	1.98
53418654--53418838	48	3.8	48	87	5	273	30	27	7	34	1.85
53418657--53418838	98	1.9	98	90	2	294	30	26	7	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53418808--53418932	47	2.7	47	89	0	196	24	27	12	35	1.92
53424294--53424386	34	2.7	34	88	0	105	26	24	21	26	1.99
53424379--53424455	18	4.3	17	72	18	59	38	14	19	27	1.90
53424783--53424926	27	5.3	27	84	3	182	20	17	20	40	1.91
53424918--53425099	27	6.7	27	89	0	265	37	15	14	32	1.88
53432233--53432269	18	2.1	18	100	0	74	29	32	0	37	1.58
53444145--53444202	23	2.5	23	94	0	98	24	18	15	41	1.89
53444145--53444210	23	2.9	23	88	0	60	22	21	18	37	1.94
53446358--53446411	21	2.5	20	82	8	54	38	1	37	22	1.65
53466007--53466182	50	3.5	49	81	7	185	28	27	18	25	1.98
53467943--53468075	55	2.5	55	83	4	146	22	24	18	34	1.96
53467984--53468137	55	2.8	56	87	2	215	24	24	15	35	1.94
53468116--53468237	47	2.6	47	94	0	208	24	23	14	36	1.93
53470432--53470551	56	2.1	56	98	0	231	45	9	23	22	1.81
53477280--53477308	14	2.0	15	93	6	51	41	3	6	48	1.47
53477795--53477907	61	1.9	58	90	5	181	40	2	6	50	1.41
53477795--53477928	58	2.2	61	85	8	179	41	2	7	49	1.43
53479510--53479626	20	5.9	20	70	2	83	13	26	18	41	1.88
53479521--53479627	40	2.7	39	72	7	99	14	26	18	41	1.88
53482077--53482177	46	2.2	46	82	3	123	26	21	14	36	1.93
53482090--53482190	46	2.2	46	87	3	141	22	23	15	37	1.93
53488015--53488131	20	5.9	20	72	2	92	12	26	20	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53488026--53488132	40	2.7	39	77	7	108	13	26	20	40	1.89
53489381--53489451	37	1.9	36	88	8	108	26	30	19	22	1.98
53489599--53489737	48	2.9	48	97	0	260	30	28	6	34	1.82
53493945--53494060	46	2.5	46	84	2	144	25	23	15	36	1.94
53498556--53498676	44	2.8	44	81	7	124	23	26	24	25	2.00
53498996--53499206	43	4.9	43	94	0	350	29	33	24	12	1.92
53505797--53505827	12	2.6	12	94	0	53	29	29	22	19	1.98
53508518--53508734	46	4.7	45	76	11	181	24	28	20	26	1.99
53511037--53511210	27	6.4	27	83	4	197	27	14	27	29	1.96
53511038--53511193	82	1.9	81	88	3	233	26	15	28	29	1.96
53519075--53519228	81	1.9	80	84	10	206	27	14	27	29	1.96
53519074--53519245	27	6.4	27	79	10	156	27	14	27	30	1.95
53519074--53519226	53	2.9	54	80	6	177	27	15	27	30	1.96
53520380--53520409	15	2.0	15	93	0	51	53	16	16	13	1.73
53520941--53521303	49	7.7	49	74	12	235	28	19	28	23	1.98
53528069--53528126	30	1.9	30	89	0	89	31	10	25	32	1.89
53528484--53528745	49	5.5	49	72	15	176	28	20	29	22	1.98
53530498--53530548	22	2.4	22	93	3	86	35	3	5	54	1.43
53530749--53530800	17	3.1	17	76	13	54	40	1	1	55	1.22
53532577--53532671	24	4.0	24	94	0	154	33	1	38	26	1.63
53533634--53533666	8	4.1	8	85	14	50	51	24	21	3	1.62
53534052--53534162	27	4.1	27	87	5	154	15	25	22	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53540384--53540484	24	4.2	24	93	0	157	33	0	39	25	1.63
53541869--53541979	27	4.1	27	87	5	154	14	26	22	36	1.92
53553477--53553659	79	2.3	80	83	7	221	24	27	23	24	2.00
53553475--53553659	40	4.7	40	83	6	225	24	28	23	24	2.00
53556146--53556209	31	2.1	31	87	0	92	26	21	14	37	1.92
53556422--53556519	23	4.2	23	89	3	142	28	21	22	27	1.99
53556570--53556636	20	3.3	20	89	0	107	32	22	11	32	1.90
53559529--53559737	26	8.2	26	87	2	282	30	22	19	28	1.98
53559787--53559837	20	2.5	20	96	0	93	29	17	11	41	1.85
53560563--53560626	27	2.4	27	84	5	85	23	25	15	35	1.94
53560633--53561344	27	26.3	27	76	4	218	32	8	21	36	1.84
53566492--53566626	40	3.4	40	97	0	252	29	30	19	20	1.97
53570699--53570850	42	3.6	42	75	9	148	29	15	24	30	1.95
53574904--53574958	18	3.2	17	73	19	51	3	36	0	60	1.15
53576185--53576292	27	4.0	26	70	15	69	22	25	16	36	1.94
53577888--53578022	40	3.4	40	87	3	184	26	25	22	25	2.00
53577911--53578022	39	2.8	39	91	2	179	26	25	22	25	2.00
53585915--53586120	40	5.2	40	83	5	215	25	27	23	23	2.00
53585938--53586121	40	4.7	39	83	5	219	25	27	23	23	2.00
53590635--53590689	18	3.2	17	76	19	60	3	34	0	61	1.13
53591752--53591809	26	2.2	27	78	12	66	34	27	12	25	1.91
53591912--53591976	28	2.3	29	91	2	105	13	24	23	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53597673--53597854	79	2.3	81	83	7	230	24	21	28	25	1.99
53597673--53597854	40	4.6	40	83	9	212	24	21	28	25	1.99
53597723--53597887	79	2.1	79	84	6	210	26	21	27	25	1.99
53601335--53601383	11	4.5	11	76	5	55	34	16	18	30	1.93
53608467--53608673	27	7.7	27	84	2	256	39	20	8	30	1.83
53608458--53608688	54	4.3	54	83	2	243	38	20	8	32	1.83
53608628--53608755	27	4.7	27	73	7	87	41	20	7	30	1.80
53608487--53608773	54	5.3	54	76	5	190	39	18	9	32	1.83
53608752--53608895	27	5.3	27	83	3	182	29	23	7	39	1.82
53608513--53608764	108	2.3	110	80	5	271	39	19	9	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343