Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  140  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46622590--46622639
6
8.2
6
81
16
50
2
20
2
76
0.99
46622579--46622649
37
1.9
37
86
11
101
2
18
2
76
1.04
46622575--46622635
16
3.8
16
77
14
63
3
19
1
75
1.03
46623554--46623595
11
3.7
11
83
3
57
14
2
2
80
0.90
46623554--46623595
12
3.7
12
84
6
52
14
2
2
80
0.90
46623549--46623594
23
2.1
23
92
8
78
15
4
4
76
1.11
46623564--46623602
12
3.2
13
82
10
55
15
5
5
74
1.17
46625287--46625383
30
3.2
30
74
8
108
28
17
25
27
1.98
46628637--46628683
20
2.3
20
85
0
67
21
12
36
29
1.91
46630349--46630453
48
2.2
46
86
8
140
14
24
0
60
1.41
46630517--46630572
21
2.7
21
72
5
51
8
17
1
71
1.21
46630536--46630655
12
10.0
12
69
19
63
8
19
3
69
1.29
46630516--46630572
14
4.1
14
75
16
57
8
17
1
71
1.19
46630579--46630637
18
3.3
18
80
0
73
5
16
6
71
1.26
46630534--46630641
6
17.7
6
68
5
65
6
19
3
70
1.25
46631678--46631741
30
2.2
28
83
13
76
4
15
4
75
1.14
46631723--46631792
12
5.5
12
77
14
61
14
5
4
75
1.14
46631743--46631775
16
2.0
17
94
5
59
24
6
3
66
1.28
46633267--46633313
20
2.3
20
81
0
58
23
12
34
29
1.92
46634919--46634988
19
3.5
20
72
12
63
55
2
2
38
1.29
46635155--46635189
10
3.5
10
88
0
52
37
22
25
14
1.92
46635152--46635199
20
2.4
20
75
0
60
31
18
29
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46635541--46635637
30
3.2
30
71
8
81
27
27
15
28
1.96
46636489--46636537
20
2.3
20
82
10
53
32
8
14
44
1.74
46638515--46638564
18
2.8
18
87
0
64
16
26
0
58
1.38
46638597--46638663
21
3.2
21
67
0
53
19
25
2
52
1.60
46638568--46638664
42
2.3
42
89
1
142
15
23
4
56
1.56
46640822--46640891
19
3.5
19
74
16
70
58
1
2
37
1.22
46640828--46640872
21
2.1
21
87
4
63
62
2
2
33
1.20
46641084--46641132
20
2.5
20
77
16
57
30
14
36
18
1.90
46651623--46651665
21
1.9
24
86
13
65
6
23
2
67
1.27
46657414--46657441
4
7.0
4
100
0
56
25
0
0
75
0.81
46658373--46658416
10
4.4
10
85
0
61
20
22
20
36
1.95
46658363--46658416
20
2.7
20
85
0
72
22
25
18
33
1.97
46660721--46660765
14
3.3
14
84
6
65
48
13
0
37
1.42
46662554--46662614
10
5.8
10
74
11
50
34
31
3
31
1.74
46662554--46662614
21
2.9
21
87
2
86
34
31
3
31
1.74
46662574--46662616
10
4.1
11
82
8
54
30
32
2
34
1.71
46668520--46668671
28
5.5
28
95
0
252
33
27
11
26
1.92
46668520--46668701
56
3.3
55
89
3
256
33
28
12
26
1.92
46671075--46671106
16
2.0
16
100
0
64
50
25
12
12
1.75
46672521--46672617
30
3.2
30
71
8
90
27
15
28
27
1.96
46675274--46675318
14
3.3
14
84
6
65
48
13
0
37
1.42
46677488--46677543
12
4.7
12
82
8
69
12
25
0
62
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46677483--46677543
24
2.5
24
83
0
77
16
24
0
59
1.37
46678122--46678178
20
2.8
20
75
0
60
31
36
12
19
1.89
46680217--46680431
46
4.7
46
76
6
168
26
18
30
24
1.98
46680217--46680432
92
2.4
90
82
4
236
26
18
30
24
1.98
46684669--46684712
21
2.0
22
86
4
63
34
34
6
25
1.82
46692701--46692727
9
3.0
9
100
0
54
11
11
11
66
1.45
46692957--46693000
21
2.0
22
86
4
63
34
34
6
25
1.82
46696496--46696548
21
2.6
20
80
16
56
67
5
20
5
1.32
46696519--46696582
6
10.5
6
76
3
65
71
3
21
3
1.13
46696539--46696584
18
2.6
18
93
6
76
71
0
26
2
0.97
46698373--46698412
21
2.0
20
85
5
53
22
20
22
35
1.96
46701379--46701475
30
3.2
30
72
8
90
28
15
27
27
1.96
46702389--46702436
15
3.3
15
73
5
53
31
0
25
43
1.55
46702383--46702442
29
2.1
29
90
0
93
30
0
28
41
1.56
46703428--46703472
14
3.3
14
84
6
65
48
13
0
37
1.42
46703928--46703972
14
3.3
14
78
6
56
35
0
15
48
1.45
46704168--46704241
30
2.5
30
84
8
80
21
20
18
39
1.93
46707590--46707627
10
3.8
10
83
13
51
21
18
31
28
1.97
46707567--46707627
20
3.0
20
83
9
63
27
14
27
29
1.95
46707591--46707628
20
1.9
20
94
0
67
18
18
34
28
1.95
46710365--46710393
1
29.0
1
100
0
58
0
0
0
100
0.00
46710436--46710484
13
3.8
13
89
10
73
16
4
0
79
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46710440--46710472
12
2.8
12
95
0
57
12
3
0
84
0.72
46710437--46710484
14
3.7
13
86
10
71
16
2
0
81
0.79
46711794--46711831
10
3.8
10
83
13
51
21
18
31
28
1.97
46711771--46711831
20
3.0
20
83
9
63
27
14
27
29
1.95
46711795--46711832
20
1.9
20
94
0
67
18
18
34
28
1.95
46712516--46712562
17
2.8
17
86
0
58
74
6
14
4
1.17
46712624--46712688
31
2.1
31
85
5
87
53
6
27
12
1.61
46713613--46713682
10
6.5
11
74
11
65
28
2
32
35
1.72
46713614--46713682
21
3.2
21
89
2
102
28
2
33
34
1.72
46716081--46716126
20
2.3
20
84
0
56
23
19
17
39
1.92
46716074--46716146
30
2.5
30
86
6
96
21
20
19
38
1.94
46717754--46717800
20
2.3
20
85
0
67
21
12
36
29
1.91
46723959--46724221
40
6.6
40
95
0
465
29
20
28
22
1.98
46729356--46729380
11
2.3
11
100
0
50
76
8
0
16
1.02
46729385--46729452
15
4.5
15
75
12
59
75
5
11
7
1.19
46729373--46729456
29
2.8
30
84
10
102
72
4
14
8
1.24
46729396--46729436
14
2.8
15
85
7
57
78
4
14
2
1.03
46730445--46730574
12
10.8
12
69
17
56
70
2
18
9
1.25
46730439--46730577
18
7.7
18
70
8
95
69
2
19
8
1.25
46730458--46730575
24
5.0
23
73
17
75
72
2
16
8
1.21
46730457--46730577
57
2.1
55
82
11
138
71
2
18
8
1.23
46730438--46730592
81
1.9
83
81
6
190
69
2
19
9
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46730538--46730575
13
2.8
13
82
17
51
73
0
18
7
1.06
46730539--46730589
21
2.4
21
74
6
50
74
1
17
5
1.11
46730592--46730654
33
1.9
33
84
12
85
53
6
26
12
1.62
46734918--46734965
12
4.1
12
84
10
55
72
4
8
14
1.23
46734919--46734957
10
3.7
10
83
12
51
76
2
7
12
1.09
46742730--46742764
13
2.8
13
91
4
54
8
8
8
74
1.23
46742730--46742763
12
2.6
14
90
9
54
8
5
8
76
1.15
46747685--46747747
33
1.9
33
84
12
85
12
25
6
55
1.60
46747793--46747886
18
5.4
17
76
10
84
8
19
3
69
1.29
46747764--46747887
12
10.5
12
71
15
80
8
19
2
69
1.26
46747762--46747855
6
15.7
6
71
4
73
7
18
3
71
1.23
46753083--46753113
13
2.4
13
100
0
62
16
41
29
12
1.85
46754601--46754635
11
3.1
11
87
4
52
20
0
20
60
1.37
46779601--46779706
42
2.5
42
96
1
194
33
11
14
41
1.81
46779689--46779733
14
3.3
14
84
6
65
37
0
13
48
1.42
46780705--46780764
29
2.1
29
84
6
77
41
26
1
30
1.65
46781012--46781046
17
1.9
19
88
11
56
68
11
5
14
1.37
46782091--46782143
18
2.9
18
80
0
70
52
0
30
16
1.44
46784558--46784663
42
2.5
42
98
1
203
33
12
14
40
1.83
46784646--46784690
14
3.3
14
84
6
65
37
0
13
48
1.42
46785661--46785720
29
2.1
29
93
0
102
41
30
0
28
1.56
46785667--46785714
15
3.3
15
73
5
53
43
27
0
29
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46786394--46786441
14
3.4
14
85
0
60
43
6
31
18
1.75
46794528--46794742
40
5.4
40
94
1
378
29
28
20
22
1.98
46797604--46797853
27
9.3
27
86
5
292
27
19
17
35
1.94
46797622--46797880
81
3.2
80
86
4
342
27
18
18
35
1.94
46797812--46797926
27
4.3
27
84
4
108
26
11
22
39
1.88
46797622--46797880
54
4.8
54
86
2
297
27
18
18
35
1.94
46800760--46800964
27
7.6
27
88
2
277
24
17
19
38
1.93
46800893--46801020
27
4.7
27
88
1
107
28
9
20
42
1.83
46800760--46800991
54
4.3
54
87
1
277
25
15
19
38
1.92
46800760--46801010
81
3.1
79
77
10
231
26
15
19
38
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343