genome.fa.s10.2.7.7.80.10.50.1000.326.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  326  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104912923--104913228	165	1.9	164	88	2	470	29	20	17	32	1.96
104913086--104913228	74	1.9	75	85	2	198	27	21	18	32	1.97
104920764--104920813	24	2.1	24	85	7	66	42	14	22	22	1.88
104923320--104923351	15	2.0	17	88	11	50	62	6	0	31	1.20
104924350--104924406	30	1.9	30	89	3	89	5	3	15	75	1.12
104926923--104927056	26	5.2	26	94	0	223	36	23	7	32	1.83
104935780--104935810	11	2.7	12	90	10	55	61	0	22	16	1.34
104938441--104938478	20	1.9	20	100	0	76	28	0	5	65	1.14
104939749--104939791	16	2.6	17	85	7	54	44	0	2	53	1.13
104939749--104939788	17	2.5	16	84	11	55	42	0	2	55	1.13
104941806--104941875	24	3.0	24	70	8	63	50	1	0	48	1.09
104942849--104942950	26	3.9	26	97	0	177	36	25	5	32	1.80
104959454--104959493	19	2.0	20	85	4	55	45	0	5	50	1.23
104964032--104964113	26	3.2	26	92	0	137	35	24	6	34	1.80
104965145--104965179	14	2.6	13	86	8	52	40	0	0	60	0.97
104972198--104972278	31	2.6	30	79	14	83	27	7	14	50	1.69
104972754--104972807	20	2.7	20	82	5	65	29	1	0	68	1.00
104972755--104972816	30	2.1	29	90	3	97	29	4	0	66	1.12
104972756--104972807	10	5.4	10	78	15	56	30	1	0	67	1.02
104972871--104972938	10	7.2	9	69	21	50	42	2	1	52	1.25
104972869--104972938	28	2.5	28	90	2	104	42	2	1	52	1.24
104976378--104976441	34	1.9	33	87	3	92	59	6	7	26	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104979851--104979912	19	3.4	19	70	17	67	41	11	22	24	1.86
104979844--104979915	36	2.0	36	100	0	144	38	11	25	25	1.88
104980511--104980549	20	2.0	20	84	0	51	64	0	0	35	0.94
104982351--104982385	15	2.2	16	90	5	54	68	2	0	28	1.04
104982351--104982393	8	5.5	8	86	5	52	65	2	2	30	1.18
104982351--104982393	16	2.8	15	89	3	59	65	2	2	30	1.18
104982545--104982609	25	2.8	24	83	6	80	52	6	7	33	1.55
104982598--104982665	30	2.3	29	84	2	82	58	4	4	32	1.37
104982539--104982757	23	9.0	24	71	15	96	55	4	5	34	1.43
104983247--104983359	30	3.8	30	91	0	181	22	4	48	24	1.68
104984158--104984408	76	3.3	75	84	3	317	31	23	16	28	1.96
104984121--104984408	76	3.8	75	81	7	298	34	22	16	27	1.95
104984480--104984529	14	3.6	14	81	7	57	64	4	12	20	1.43
104984671--104984710	14	2.8	14	84	3	53	67	5	12	15	1.38
104984440--104984862	180	2.3	181	90	4	701	40	18	15	25	1.90
104984689--104984929	77	3.2	75	86	5	314	37	19	16	26	1.93
104984689--104985093	71	5.3	71	75	16	325	36	18	16	28	1.92
104984810--104985149	155	2.2	157	84	8	435	35	18	16	30	1.93
104985208--104985479	74	3.7	73	85	9	358	31	21	15	30	1.95
104984809--104985555	404	1.8	408	82	9	968	35	19	15	29	1.93
104985344--104985640	161	1.9	159	84	6	404	36	22	14	27	1.93
104985656--104985980	78	4.4	74	86	7	466	30	21	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104985762--104985990	70	3.2	70	87	5	359	32	20	17	30	1.95
104985656--104985990	144	2.3	145	92	2	546	31	21	16	30	1.95
104985998--104986170	68	2.5	70	85	4	210	32	22	14	30	1.94
104995846--104995895	21	2.3	22	89	3	75	34	0	0	66	0.92
104999208--104999254	21	2.2	22	92	3	78	21	19	38	21	1.94
105003812--105003977	86	1.9	88	82	6	212	34	20	18	26	1.96
105004080--105004926	74	11.8	71	87	8	1130	32	20	17	29	1.96
105003890--105004916	74	14.0	75	82	10	860	32	21	17	28	1.96
105004280--105004926	70	9.2	70	89	7	949	33	20	17	28	1.95
105004926--105005099	69	2.5	71	84	5	205	32	22	14	31	1.94
105004727--105005099	191	1.9	198	84	4	508	33	21	15	30	1.94
105017364--105017454	36	2.5	36	79	12	96	60	3	3	32	1.29
105020239--105020308	31	2.2	32	82	12	92	50	2	4	42	1.37
105020327--105020384	18	3.3	17	73	7	53	65	0	0	34	0.93
105020341--105020388	22	2.0	22	84	11	60	62	0	0	37	0.95
105028292--105028393	26	3.9	26	88	0	159	31	7	25	35	1.85
105033206--105033246	20	2.2	20	86	8	59	70	4	0	24	1.06
105033203--105033323	56	2.2	56	90	3	190	64	11	0	23	1.31
105035068--105035117	21	2.4	21	96	0	91	26	30	28	16	1.96
105036935--105036990	24	2.3	25	96	3	105	32	8	7	51	1.60
105044284--105044346	31	2.0	32	90	3	101	38	17	9	34	1.82
105044445--105044475	16	1.9	16	100	0	62	32	0	3	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105044447--105044482	16	2.2	16	90	0	54	33	2	2	61	1.25
105045425--105045476	27	2.0	25	85	14	70	48	11	25	15	1.78
105048102--105048161	31	1.9	32	82	3	77	41	15	6	36	1.73
105048261--105048298	16	2.4	16	90	0	58	31	7	0	60	1.25
105048385--105048446	27	2.2	28	80	11	74	50	3	8	38	1.48
105048394--105048445	27	2.0	27	88	3	79	50	3	9	36	1.54
105049335--105049384	27	1.9	25	84	15	66	46	12	26	16	1.81
105049403--105049439	19	1.9	19	89	10	58	21	5	10	62	1.48
105052859--105052887	10	2.7	11	94	5	51	82	0	0	17	0.66
105054694--105054738	23	2.0	23	82	8	56	37	8	13	40	1.76
105056249--105056564	125	2.5	125	83	3	404	38	16	14	30	1.89
105056905--105056976	15	5.0	14	75	15	58	63	1	8	26	1.30
105058360--105058492	42	3.1	42	65	12	108	23	24	17	35	1.95
105058198--105059030	86	9.6	86	87	2	1089	20	23	20	35	1.96
105058532--105058759	42	5.3	42	65	19	121	19	24	21	35	1.96
105059101--105059225	64	2.0	64	95	0	223	37	16	16	29	1.91
105065058--105065320	125	2.1	125	84	2	341	39	15	15	29	1.89
105065108--105065373	125	2.1	124	84	4	349	38	16	14	30	1.88
105065676--105065778	29	3.6	29	74	14	88	66	0	4	28	1.11
105065703--105065748	15	3.3	15	88	11	71	76	0	0	23	0.79
105065701--105065745	12	3.5	12	77	16	54	75	0	0	24	0.80
105065703--105065795	15	7.0	14	70	19	65	67	0	5	26	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105065705--105065835	52	2.6	52	78	13	123	66	1	5	26	1.22
105066357--105066383	5	5.4	5	100	0	54	81	0	0	18	0.69
105070014--105070044	10	2.9	11	90	9	55	80	0	0	19	0.71
105077686--105077728	17	2.5	17	80	3	50	48	2	0	48	1.14
105081837--105081893	19	3.1	19	80	14	66	61	0	1	36	1.07
105081841--105081899	27	2.1	28	84	3	75	59	1	1	37	1.18
105082993--105083085	18	5.2	18	86	0	123	27	21	16	34	1.95
105087796--105087842	24	2.0	24	83	8	60	36	2	2	59	1.21
105091488--105091532	21	2.0	23	83	8	58	40	0	4	55	1.20
105091488--105091576	23	4.0	22	72	11	74	40	0	7	51	1.31
105098176--105098277	51	2.0	51	96	0	186	31	11	27	29	1.92
105099269--105099405	62	2.2	60	80	12	147	12	21	18	47	1.81
105100510--105100564	23	2.4	23	82	14	62	29	0	3	67	1.08
105100510--105100566	11	5.1	11	78	16	55	28	0	3	68	1.06
105100822--105100864	22	2.0	22	95	0	77	34	0	20	44	1.52
105103435--105103525	40	2.3	40	96	0	164	30	29	17	21	1.96
105107045--105107109	32	2.0	32	100	0	130	38	24	6	30	1.80
105108535--105108725	34	5.6	34	73	4	161	42	12	12	32	1.80
105108541--105108715	68	2.6	67	77	8	183	42	10	13	33	1.79
105114227--105114258	3	10.7	3	100	0	64	0	31	0	68	0.90
105116861--105116898	18	2.1	18	95	0	67	21	21	31	26	1.98
105116740--105117257	201	2.6	200	89	1	757	28	17	29	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105118113--105118160	20	2.3	21	75	7	53	39	8	12	39	1.73
105119628--105119661	17	2.0	17	94	0	59	44	50	0	5	1.26
105124267--105124300	17	2.0	17	94	0	59	44	50	0	5	1.26
105126305--105126407	44	2.3	45	84	3	127	31	22	12	33	1.91
105126324--105126412	46	2.0	44	88	4	133	29	25	12	32	1.92
105130967--105130996	15	2.0	15	93	0	51	50	13	30	6	1.67
105131754--105131808	3	18.3	3	100	0	110	32	0	0	67	0.91
105132066--105132196	36	3.6	34	70	15	93	53	1	5	39	1.33
105132425--105132465	9	4.8	9	76	11	50	34	0	9	56	1.32
105132424--105132465	16	2.5	17	80	11	50	35	0	9	54	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343