genome.fa.s10.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  122  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40962372--40962456	27	3.1	27	81	5	100	37	23	22	16	1.93
40967224--40967475	126	2.0	126	87	3	364	26	29	21	23	1.99
40968314--40968534	47	4.7	47	77	11	181	23	27	19	29	1.98
40968314--40968529	93	2.3	95	79	10	230	24	27	18	29	1.98
40975811--40975848	19	2.0	19	85	10	51	36	5	31	26	1.79
40980962--40981095	41	3.3	41	90	4	202	24	21	26	26	1.99
40982458--40982525	26	2.5	26	88	4	91	36	22	10	30	1.87
40982490--40982707	27	8.1	27	78	2	204	42	18	7	31	1.79
40982506--40982707	81	2.5	81	78	3	228	43	18	7	30	1.78
40982955--40983074	41	2.9	41	88	0	168	24	23	28	24	2.00
40983218--40983270	22	2.4	22	72	12	54	22	20	24	32	1.98
40984984--40985017	17	2.0	17	100	0	68	29	5	11	52	1.61
40994669--40994721	21	2.5	21	72	6	54	16	33	24	24	1.96
40996089--40996420	180	1.8	180	88	1	513	34	18	8	39	1.81
40996980--40997255	50	5.5	50	78	9	292	28	26	17	27	1.97
40996983--40997255	151	1.8	150	89	3	431	29	26	17	27	1.97
40997745--40997825	27	3.0	27	87	0	108	32	17	20	29	1.96
40997810--40997867	26	2.2	27	84	3	73	43	13	8	34	1.75
40997861--40998118	27	9.5	27	78	5	171	41	21	11	25	1.87
40998050--40998129	28	2.9	27	81	9	99	43	20	10	26	1.82
40998023--40998129	55	1.9	55	83	3	135	42	20	10	26	1.84
40998160--40998212	27	2.0	27	84	0	70	41	13	11	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40998471--40998593	41	3.0	41	83	4	167	22	19	29	28	1.98
40998734--40998798	22	3.0	22	80	8	78	20	26	23	30	1.98
41001341--41001397	27	2.1	27	86	0	78	31	14	24	29	1.94
41001403--41001452	26	1.9	26	91	0	82	36	18	10	36	1.84
41001494--41001677	27	6.9	26	79	11	117	36	22	11	28	1.89
41001496--41001650	53	2.9	55	85	3	167	36	24	11	27	1.90
41001535--41001677	53	2.7	54	85	4	182	37	25	11	25	1.89
41001632--41001787	27	5.7	27	80	7	147	46	18	5	29	1.72
41001580--41001787	54	3.9	54	79	6	190	43	20	7	28	1.78
41002053--41002175	41	3.0	41	84	0	165	25	18	26	29	1.98
41002317--41002381	22	3.0	22	77	8	78	21	24	21	32	1.98
41002750--41002808	27	2.2	27	78	0	64	23	18	23	33	1.97
41004521--41004554	17	1.9	18	88	5	52	32	29	2	35	1.73
41005830--41005903	6	12.2	6	71	8	60	71	1	17	9	1.19
41005841--41005903	19	3.4	18	82	8	83	71	1	17	9	1.20
41007266--41007332	20	3.3	20	80	2	80	22	26	14	35	1.93
41009044--41009080	17	2.1	18	90	5	58	32	32	2	32	1.72
41010972--41011035	31	2.1	31	90	0	101	51	6	12	29	1.64
41012005--41012384	50	7.5	50	80	5	336	31	25	17	26	1.97
41011998--41012329	151	2.2	151	90	2	515	29	25	18	26	1.98
41012003--41012384	101	3.8	100	78	5	365	31	25	17	25	1.97
41013994--41014216	47	4.8	48	79	7	210	23	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41013996--41014216	93	2.4	94	80	8	236	23	28	19	28	1.98
41027576--41027654	37	2.1	37	88	0	113	26	31	17	24	1.97
41027773--41028363	47	12.4	47	91	1	849	29	28	8	32	1.88
41031890--41031979	39	2.3	39	92	3	144	25	25	23	25	2.00
41098791--41098868	37	2.1	37	87	0	111	26	32	16	24	1.96
41098983--41099558	46	12.4	47	87	6	757	29	29	8	32	1.87
41099034--41099558	189	2.8	185	86	8	743	30	28	8	32	1.86
41102849--41102897	25	2.0	25	87	0	71	30	32	8	28	1.86
41103084--41103251	40	4.3	38	77	8	151	25	27	22	25	2.00
41103562--41103639	31	2.6	29	82	13	86	24	29	15	30	1.95
41105745--41106285	47	11.4	47	82	9	584	28	29	9	32	1.88
41119729--41119823	25	3.8	25	76	1	84	20	24	24	31	1.98
41129240--41129431	47	4.1	46	80	3	161	25	15	27	31	1.96
41133689--41133714	11	2.4	11	100	0	52	38	38	7	15	1.76
41144111--41144202	39	2.4	39	90	0	139	23	28	19	28	1.98
41146971--41147062	32	2.9	32	88	0	121	30	25	9	34	1.88
41147141--41147235	28	3.4	28	73	11	86	26	26	17	29	1.98
41147141--41147266	56	2.2	56	81	0	135	25	28	17	28	1.97
41149376--41149486	27	4.1	27	80	5	109	38	20	23	17	1.93
41149376--41149486	54	2.1	53	81	1	123	38	20	23	17	1.93
41150894--41150994	24	4.2	24	87	2	132	24	40	2	31	1.70
41156752--41156859	27	4.0	27	84	5	130	38	22	21	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41156752--41156859	54	2.0	53	85	1	144	38	22	21	17	1.93
41158262--41158363	24	4.2	24	83	2	80	24	39	2	33	1.70
41159426--41159483	30	1.9	30	92	0	98	32	10	25	31	1.89
41159870--41160028	45	3.5	43	76	12	133	25	16	32	25	1.97
41164577--41164726	67	2.2	67	81	8	171	32	17	28	21	1.96
41164601--41164784	67	2.8	64	76	8	185	29	16	29	23	1.96
41167193--41167596	201	2.0	201	87	0	576	34	14	22	28	1.93
41171316--41171477	46	3.5	46	80	9	163	27	20	28	23	1.99
41181283--41181308	8	3.2	8	100	0	52	26	26	0	46	1.53
41188892--41188946	18	3.2	17	76	19	60	3	34	0	61	1.13
41190939--41191313	27	13.9	27	84	5	195	34	21	9	35	1.85
41190958--41191168	54	3.9	54	90	1	307	29	21	8	40	1.83
41190958--41191168	81	2.6	81	90	0	332	29	21	8	40	1.83
41190945--41191210	81	3.3	81	82	2	255	32	21	8	37	1.83
41191161--41191369	27	7.8	27	80	4	199	38	21	10	29	1.87
41191161--41191329	81	2.1	81	86	2	232	39	21	10	28	1.86
41191357--41191465	27	4.0	27	81	2	121	35	19	20	24	1.95
41191670--41191740	24	3.0	23	83	6	70	29	22	22	25	1.99
41192657--41192736	27	3.0	26	81	13	101	26	27	17	28	1.98
41196229--41196376	50	3.1	49	70	20	134	34	29	14	22	1.93
41196291--41196376	43	2.0	41	86	4	118	31	31	15	22	1.94
41199327--41199356	16	1.9	16	93	6	53	30	0	20	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41202082--41202218	43	3.3	42	79	8	136	24	16	25	32	1.96
41203941--41204055	46	2.5	44	87	4	149	23	31	19	26	1.98
41205830--41205892	25	2.5	25	82	5	74	44	15	20	19	1.87
41206014--41206121	27	4.0	26	82	5	99	35	24	22	18	1.96
41206686--41206716	16	1.9	16	93	0	53	35	12	22	29	1.91
41206859--41206999	27	5.2	27	86	0	165	28	19	14	36	1.92
41206847--41206959	54	2.1	54	81	3	129	28	20	19	31	1.97
41206984--41207241	27	9.6	27	78	7	143	30	8	22	38	1.84
41206984--41207220	107	2.2	108	77	8	245	30	8	22	37	1.85
41207038--41207188	81	1.9	80	80	6	180	27	8	23	39	1.84
41207034--41207241	54	3.9	53	76	12	187	27	8	23	39	1.84
41207198--41207251	27	2.0	27	89	3	83	35	5	20	38	1.76
41207207--41207257	27	1.9	27	88	4	77	37	3	17	41	1.68
41209410--41209495	27	3.2	26	85	5	100	37	18	22	22	1.94
41210245--41210380	27	5.0	27	82	0	164	23	20	19	36	1.95
41210247--41210379	54	2.5	54	86	0	185	24	21	19	35	1.96
41210383--41210470	27	3.3	26	77	6	68	31	5	22	39	1.78
41210420--41210630	27	7.9	26	78	11	101	29	9	22	38	1.86
41210453--41210630	54	3.3	52	75	9	162	29	10	21	38	1.86
41210587--41210637	27	1.9	27	92	4	86	33	9	21	35	1.86
41210593--41210646	27	2.0	27	85	3	74	37	9	16	37	1.81
41212594--41212681	6	14.3	6	68	17	56	50	14	17	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41212615--41212681	25	2.7	25	85	0	98	49	14	17	17	1.80
41216118--41216342	40	5.7	40	86	5	278	25	28	22	24	2.00
41216120--41216342	119	1.9	120	84	6	301	25	27	22	24	2.00
41217472--41217647	56	3.1	56	100	0	352	22	23	9	44	1.81
41224117--41224340	40	5.7	40	85	6	269	25	28	21	24	1.99
41224117--41224338	78	2.8	79	85	6	272	25	28	21	24	1.99
41224119--41224340	118	1.9	120	83	5	299	25	27	22	24	2.00
41226022--41226086	22	3.0	22	80	8	78	30	23	26	20	1.98
41226601--41226686	27	3.2	27	86	0	109	27	20	16	34	1.94
41226671--41226903	27	8.7	27	79	6	91	30	8	21	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343