Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  332  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106286805--106286893
30
3.0
30
77
8
92
57
14
16
11
1.65
106286805--106286884
15
5.4
15
77
7
83
58
12
17
11
1.62
106286816--106286893
15
5.2
15
74
9
61
56
14
16
12
1.68
106298961--106299048
18
4.9
18
84
0
104
36
14
20
28
1.92
106298962--106299053
36
2.6
36
83
0
121
36
15
18
29
1.91
106300237--106300346
30
3.6
30
77
7
114
40
3
1
53
1.29
106300223--106300346
61
2.0
61
92
3
205
44
3
1
50
1.27
106300344--106300410
33
2.1
32
86
5
91
53
5
2
37
1.41
106301015--106301074
21
3.0
20
83
14
70
33
3
0
63
1.11
106301018--106301074
27
2.2
26
81
15
64
33
3
0
63
1.12
106301037--106301080
21
2.2
20
92
8
72
27
4
0
68
1.09
106303863--106303935
38
1.9
38
97
0
137
20
26
12
41
1.87
106311285--106311356
28
2.7
26
80
6
81
31
4
0
63
1.13
106311296--106311338
15
3.0
15
80
19
56
25
4
0
69
1.07
106311216--106311341
18
7.1
17
69
20
71
32
3
0
63
1.16
106311221--106311358
62
2.3
61
79
17
146
34
3
0
61
1.18
106316712--106316790
36
2.2
35
80
6
86
32
25
16
25
1.96
106320713--106320761
3
16.3
3
80
16
57
65
0
4
30
1.11
106320719--106320773
24
2.3
25
84
12
71
65
0
7
27
1.19
106320789--106320836
20
2.3
21
83
16
57
58
4
0
37
1.18
106320889--106320951
25
2.7
23
79
13
65
61
0
6
31
1.21
106320904--106320944
15
2.9
15
79
13
52
56
0
9
34
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106321030--106321137
3
36.7
3
69
10
71
57
0
8
33
1.35
106321077--106321161
27
3.3
26
75
18
72
57
1
9
31
1.38
106321099--106321161
27
2.4
27
81
2
74
58
1
9
30
1.39
106322746--106323084
88
3.8
89
83
5
427
38
19
15
27
1.92
106323000--106323154
73
2.1
73
87
8
217
36
21
14
27
1.92
106322912--106323226
161
1.9
163
87
5
458
36
20
15
26
1.93
106323063--106323328
91
3.0
90
85
4
362
38
19
15
27
1.91
106323226--106323261
14
2.6
14
90
0
54
52
2
13
30
1.55
106322815--106323319
252
2.0
253
85
5
691
37
19
16
27
1.93
106333447--106333482
17
2.2
17
90
5
56
72
13
0
13
1.13
106334320--106334382
28
2.3
27
76
13
65
58
4
3
33
1.35
106334407--106334464
3
19.3
3
73
19
50
65
1
3
29
1.19
106334399--106334450
9
5.8
9
81
0
59
71
0
3
25
1.03
106334416--106334464
21
2.3
22
79
10
57
63
2
4
30
1.24
106334608--106334649
15
2.9
15
79
10
52
57
0
9
33
1.31
106334732--106334839
3
36.7
3
69
10
71
57
0
8
33
1.35
106334779--106334863
27
3.3
26
75
18
72
57
1
9
31
1.38
106334801--106334863
27
2.4
27
81
2
74
58
1
9
30
1.39
106344148--106344181
14
2.4
14
90
0
50
32
5
2
58
1.37
106345614--106345658
23
2.0
23
86
0
63
31
4
0
64
1.13
106345674--106345746
28
2.6
28
82
8
78
20
2
6
69
1.24
106347608--106347663
29
1.9
29
96
0
103
25
12
21
41
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106351225--106351263
14
2.8
14
84
0
51
66
2
12
17
1.35
106352211--106352383
92
1.9
92
97
0
328
22
30
14
32
1.94
106354646--106354709
32
2.0
32
100
0
128
50
6
15
28
1.68
106355351--106355385
17
2.0
18
88
5
54
60
8
11
20
1.57
106355568--106355613
3
15.7
3
81
4
58
63
2
0
34
1.07
106358570--106358626
30
1.9
30
89
7
89
40
7
0
52
1.28
106360316--106360790
119
4.0
119
91
0
736
29
18
17
34
1.94
106365116--106365175
32
1.9
31
86
10
86
40
6
0
53
1.27
106366035--106366146
56
2.0
56
96
0
206
33
16
8
42
1.77
106377618--106377719
44
2.3
43
81
8
109
37
22
19
20
1.95
106377618--106378135
222
2.3
221
94
1
894
33
19
21
25
1.97
106378045--106378210
87
1.9
87
81
4
201
34
21
22
21
1.96
106380136--106380195
32
1.9
31
86
10
86
40
6
0
53
1.27
106381866--106381912
23
2.0
23
100
0
94
29
29
12
27
1.93
106381914--106382385
119
4.0
119
90
0
714
29
18
17
34
1.94
106393782--106393816
17
2.0
18
88
5
54
60
8
11
20
1.57
106404352--106404455
45
2.3
46
88
6
149
33
10
28
26
1.90
106413532--106413606
36
2.1
36
100
0
150
48
6
5
40
1.52
106414241--106414301
32
1.9
32
93
3
106
49
13
14
22
1.78
106421246--106421280
12
2.9
12
82
0
52
77
2
2
17
1.02
106422677--106422706
15
2.0
15
93
0
51
13
13
3
70
1.30
106422924--106423033
3
35.3
3
70
12
62
30
3
7
59
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106427092--106427123
10
3.3
10
95
4
57
62
0
6
31
1.20
106427148--106427177
15
2.0
15
93
0
51
40
10
0
50
1.36
106430728--106430802
37
2.0
37
100
0
150
34
5
29
30
1.80
106432826--106432967
72
2.0
72
81
5
171
33
21
14
30
1.92
106434260--106434295
16
2.3
16
90
4
56
72
0
8
19
1.10
106434247--106434304
9
6.6
9
77
16
59
68
0
10
20
1.18
106434456--106434494
20
1.9
21
84
5
53
51
0
17
30
1.46
106434659--106434713
25
2.2
25
93
3
94
65
0
1
32
1.03
106434659--106434713
28
2.0
28
92
3
94
65
0
1
32
1.03
106434659--106434713
3
18.0
3
92
3
92
65
0
1
32
1.03
106434679--106434755
21
3.6
22
78
16
74
61
2
10
25
1.42
106434803--106434861
18
3.2
19
75
15
61
66
3
1
28
1.18
106437524--106437549
11
2.4
11
100
0
52
46
0
0
53
1.00
106449203--106449243
21
2.0
21
90
0
64
19
29
21
29
1.98
106453774--106453805
14
2.2
15
94
5
57
15
9
0
75
1.05
106453966--106454005
19
2.1
19
95
0
71
45
10
20
25
1.81
106459408--106459433
11
2.4
11
100
0
52
34
7
19
38
1.80
106461217--106461285
21
3.4
21
71
15
72
36
1
7
55
1.37
106461272--106461302
15
2.1
14
94
5
53
35
3
6
54
1.42
106466232--106466267
18
1.9
19
88
5
56
19
19
30
30
1.96
106469952--106470323
3
126.3
3
68
15
161
59
1
8
30
1.36
106470385--106470410
3
8.7
3
100
0
52
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106478819--106478883
9
7.2
9
75
10
53
70
0
9
20
1.13
106478817--106478883
24
2.5
29
79
13
81
70
0
8
20
1.14
106478986--106479176
82
2.3
83
79
10
187
61
1
7
29
1.31
106479032--106479132
31
3.3
29
77
12
105
63
0
7
27
1.29
106479032--106479240
109
1.9
105
82
13
257
61
0
9
28
1.31
106478985--106479234
19
13.3
19
67
19
89
60
0
9
29
1.33
106479432--106479524
44
2.1
44
80
7
100
59
3
7
30
1.41
106478985--106479576
3
199.7
3
65
15
128
58
2
9
30
1.41
106479762--106479800
3
13.3
3
84
15
55
66
0
0
33
0.92
106482644--106482748
51
2.1
51
100
0
210
29
9
18
42
1.81
106485323--106485377
27
2.0
28
82
10
69
67
3
0
29
1.08
106489316--106489357
21
2.0
21
90
0
66
50
2
0
47
1.14
106490081--106490137
7
7.7
7
73
11
51
42
24
3
29
1.71
106490083--106490143
29
2.1
30
87
3
88
39
21
4
34
1.75
106490554--106490587
16
2.1
16
88
0
50
50
14
17
17
1.79
106493385--106493425
21
2.0
21
90
0
64
29
21
29
19
1.98
106495331--106495364
16
2.1
16
88
0
50
50
14
17
17
1.79
106500047--106500086
14
2.9
13
85
10
53
40
20
2
37
1.66
106500933--106501140
113
1.8
113
84
4
285
38
6
7
47
1.58
106502323--106502387
23
2.8
23
75
6
60
64
0
0
35
0.94
106502339--106502385
21
2.1
22
85
14
62
63
0
0
36
0.94
106508261--106508352
18
5.2
17
75
7
60
18
18
27
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106508857--106509037
88
2.1
88
100
0
362
35
20
9
33
1.86
106511258--106511341
41
2.0
41
95
0
150
50
13
8
28
1.70
106512383--106512434
26
2.0
26
100
0
104
38
19
11
30
1.87
106536563--106536826
129
2.0
135
84
7
353
27
9
16
46
1.77
106546444--106546504
31
2.0
31
100
0
122
49
13
16
21
1.79
106546446--106546516
31
2.3
31
92
0
115
50
14
14
21
1.77
106546446--106546544
31
3.3
29
84
5
83
51
12
14
22
1.74
106547713--106547763
20
2.9
17
80
11
50
3
3
13
78
1.03
106548942--106548992
24
2.1
24
100
0
102
45
0
25
29
1.54
106550394--106550444
19
2.6
19
84
12
59
45
3
3
47
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343