Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  339  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108499685--108499713
3
9.7
3
100
0
58
0
65
0
34
0.93
108504760--108504862
33
3.1
33
90
5
163
18
3
19
58
1.55
108504760--108504865
34
3.2
32
90
6
158
17
3
19
58
1.54
108508534--108508585
24
2.2
24
86
6
70
48
9
3
38
1.54
108515132--108515204
18
4.1
18
89
0
101
35
9
19
35
1.84
108525275--108525488
109
2.0
109
90
1
342
42
14
3
39
1.63
108536615--108536655
21
2.0
21
90
0
64
29
21
29
19
1.98
108540227--108545377
439
11.8
439
91
2
7328
34
9
13
43
1.76
108542128--108542177
18
2.8
18
75
0
55
22
4
0
74
0.99
108542544--108542593
18
2.8
18
75
0
55
22
4
0
74
0.99
108548531--108548641
26
4.5
23
70
19
66
59
4
5
30
1.40
108551120--108551208
18
4.9
18
87
0
124
30
23
14
31
1.94
108551118--108551208
36
2.5
36
92
0
146
29
23
15
31
1.95
108558608--108561071
442
5.6
441
92
2
3789
33
9
13
43
1.77
108558069--108561071
884
3.4
880
89
3
4305
33
9
13
43
1.76
108567256--108567517
46
5.7
46
90
2
350
21
22
13
41
1.88
108567256--108567517
91
2.9
91
88
2
364
21
22
13
41
1.88
108567256--108567517
137
1.9
137
85
3
366
21
22
13
41
1.88
108568683--108568750
30
2.3
30
84
5
84
27
19
5
47
1.72
108573523--108573582
31
1.9
31
90
6
95
48
6
3
41
1.46
108576334--108576452
14
8.0
14
84
10
148
15
6
22
55
1.63
108576334--108576461
15
8.5
15
82
12
147
15
6
21
57
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108576310--108576446
44
3.1
44
82
11
122
13
7
21
57
1.60
108576333--108576465
31
4.4
30
84
11
173
15
6
21
57
1.61
108576861--108576908
25
1.9
25
91
0
78
31
10
29
29
1.90
108577494--108577847
54
6.8
47
86
10
307
36
18
15
29
1.92
108577539--108577847
54
5.7
54
94
1
519
35
17
15
30
1.92
108577490--108577847
163
2.3
153
89
5
536
36
18
16
29
1.92
108577539--108577847
109
2.8
109
93
0
530
35
17
15
30
1.92
108577853--108578810
145
6.6
145
96
0
1740
34
17
16
31
1.92
108580985--108581020
14
2.6
14
90
0
54
0
8
5
86
0.72
108580984--108581038
15
3.7
15
79
16
60
0
10
3
85
0.72
108580983--108581037
13
4.1
14
76
9
60
0
9
3
87
0.66
108585754--108585781
8
3.5
8
100
0
56
0
14
35
50
1.43
108585836--108585978
14
9.4
14
75
17
126
16
7
21
53
1.68
108585835--108585979
15
9.5
15
81
13
163
16
7
21
54
1.66
108585835--108585983
31
4.9
31
84
13
186
16
8
21
54
1.67
108589831--108590333
131
3.8
131
79
4
419
34
17
17
29
1.94
108596352--108596587
126
1.9
126
88
1
357
30
22
15
30
1.95
108597800--108597831
15
2.1
15
94
0
55
50
0
28
21
1.49
108604082--108604136
21
2.6
21
80
5
58
32
9
10
47
1.70
108604188--108604252
26
2.6
25
70
18
62
56
1
1
40
1.18
108605968--108606346
3
125.7
3
67
14
131
57
2
8
31
1.40
108607158--108607189
9
3.6
9
100
0
64
81
18
0
0
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108616638--108616724
44
2.0
43
93
2
147
49
14
6
28
1.70
108621369--108621455
44
2.0
43
93
2
147
49
14
6
28
1.70
108627259--108627288
15
2.0
15
93
0
51
50
6
23
20
1.71
108634390--108635026
189
3.4
189
89
1
956
32
18
18
30
1.95
108641336--108641382
18
2.5
19
82
3
69
36
2
2
59
1.21
108643512--108643547
17
2.1
17
100
0
72
22
19
25
33
1.97
108647241--108647310
30
2.3
30
100
0
140
52
8
0
38
1.32
108648059--108648092
16
2.1
16
94
0
59
47
5
26
20
1.73
108648943--108648976
17
2.0
17
94
0
59
44
50
0
5
1.26
108653571--108653604
17
2.0
17
94
0
59
44
50
0
5
1.26
108659749--108660385
189
3.4
188
87
2
866
32
17
17
31
1.94
108663376--108663671
39
7.5
39
92
2
470
18
21
29
29
1.97
108671780--108671982
47
4.3
47
87
3
277
27
29
9
33
1.88
108671894--108671972
25
3.3
25
63
22
69
31
30
5
32
1.79
108676330--108676361
10
3.1
10
95
4
55
46
18
25
9
1.79
108680939--108681014
38
2.0
38
92
0
125
32
15
11
39
1.84
108681070--108681117
23
2.1
23
88
3
71
22
4
27
45
1.70
108683311--108683346
13
2.7
13
91
4
54
38
0
0
61
0.96
108690403--108690435
10
3.4
10
87
4
50
33
0
0
66
0.92
108698061--108698122
17
3.5
17
82
8
79
38
11
11
38
1.77
108698711--108698762
25
2.1
25
100
0
104
25
7
26
40
1.82
108702391--108702417
14
1.9
14
100
0
54
88
0
11
0
0.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108703915--108703989
7
9.7
7
78
17
69
84
0
14
1
0.70
108703913--108703974
10
6.4
9
82
12
70
85
0
12
1
0.67
108703916--108703974
18
3.2
17
86
11
73
84
0
13
1
0.69
108703936--108703989
9
6.4
9
79
14
62
83
0
16
0
0.65
108703936--108703989
16
3.3
17
89
2
76
83
0
16
0
0.65
108703915--108703983
23
2.9
24
89
4
95
84
0
14
1
0.70
108704929--108705071
43
3.3
43
73
14
141
33
23
19
23
1.97
108704918--108705126
87
2.5
85
85
7
300
32
23
21
22
1.98
108705251--108706373
207
5.4
207
93
0
1870
30
17
23
29
1.97
108706772--108706895
19
6.8
19
84
10
179
37
10
14
37
1.81
108706780--108706895
35
3.2
35
92
3
187
37
11
13
37
1.81
108708467--108708533
30
2.2
30
94
2
116
59
11
7
20
1.56
108713380--108713414
15
2.3
15
100
0
70
57
11
20
11
1.64
108725769--108725800
5
6.6
5
92
7
57
18
0
0
81
0.70
108725769--108725799
14
2.2
14
100
0
62
19
0
0
80
0.71
108728782--108728864
41
2.0
41
97
0
157
26
6
21
45
1.75
108730250--108730281
5
6.6
5
92
7
57
18
0
0
81
0.70
108730250--108730280
9
3.3
9
91
8
53
19
0
0
80
0.71
108736136--108736245
38
2.9
38
88
0
157
18
23
16
41
1.89
108737434--108737617
46
4.0
46
89
1
253
21
23
14
40
1.90
108737589--108737645
28
2.0
28
100
0
114
28
24
7
40
1.81
108737543--108737691
74
2.0
74
100
0
298
25
24
12
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108747366--108747401
14
2.6
14
86
0
54
33
0
0
66
0.92
108752489--108752520
9
3.6
9
100
0
64
12
0
9
78
0.97
108764056--108764096
21
2.0
21
90
0
64
19
29
21
29
1.98
108777769--108777809
21
2.0
21
90
0
64
29
21
29
19
1.98
108780488--108780514
6
4.5
6
100
0
54
14
18
14
51
1.76
108794602--108794651
17
2.7
20
78
18
70
10
0
44
46
1.37
108795363--108795409
23
2.0
23
100
0
94
25
12
29
31
1.93
108799255--108799304
17
2.7
20
78
18
70
10
0
44
46
1.37
108801778--108801827
17
2.7
20
78
18
70
10
0
44
46
1.37
108806406--108806455
17
2.7
20
78
18
70
10
0
44
46
1.37
108806996--108807164
39
4.3
38
87
1
194
36
11
31
20
1.88
108810260--108811665
142
9.9
142
82
7
1691
33
9
22
35
1.86
108810261--108811665
281
5.0
281
86
5
1786
33
9
22
35
1.86
108812968--108813106
75
1.9
75
90
0
224
28
21
13
35
1.92
108816835--108817032
99
2.0
99
93
1
335
32
12
19
35
1.89
108818056--108818391
168
2.0
167
97
0
627
25
16
13
43
1.85
108822646--108822694
14
3.6
14
72
10
57
12
16
16
55
1.70
108822644--108822698
26
2.1
26
100
0
110
18
14
16
50
1.77
108824238--108824288
15
3.4
15
81
10
59
37
7
0
54
1.29
108826577--108826610
16
2.1
16
88
5
50
44
0
2
52
1.16
108827366--108827415
17
2.7
20
78
18
70
10
0
44
46
1.37
108831995--108832044
17
2.7
20
78
18
70
10
0
44
46
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108836574--108836614
21
2.0
21
90
0
64
19
29
21
29
1.98
108841280--108841798
189
2.7
189
83
4
625
33
20
18
28
1.96
108844781--108844830
17
2.7
20
78
18
70
10
0
44
46
1.37
108849409--108849458
17
2.7
20
78
18
70
10
0
44
46
1.37
108850025--108850072
3
16.0
3
87
8
71
66
2
0
31
1.03
108853379--108853420
16
2.5
17
77
14
52
38
0
21
40
1.53
108853856--108853907
21
2.5
21
74
0
59
13
30
28
26
1.94
108858825--108858862
3
12.7
3
88
0
58
0
39
0
60
0.97
108860765--108860851
44
2.0
44
97
0
165
36
12
16
34
1.86
108861773--108862316
189
2.9
187
83
6
648
31
19
18
30
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343