genome.fa.s10.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  141  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46800977--46801100	27	4.6	27	87	6	162	23	4	23	48	1.70
46800946--46801109	54	3.0	54	78	4	170	27	5	21	45	1.74
46809486--46809518	5	6.6	5	100	0	66	0	39	0	60	0.97
46817078--46817175	30	3.3	30	67	13	76	26	15	30	27	1.96
46819372--46819438	30	2.2	30	82	10	75	13	20	1	64	1.36
46819414--46819445	12	2.7	12	95	0	55	9	15	3	71	1.24
46819441--46819471	12	2.6	12	100	0	62	25	16	12	45	1.83
46819519--46819575	5	11.0	5	75	20	55	3	17	1	77	1.00
46819519--46819575	16	3.7	14	82	15	60	3	17	1	77	1.00
46819519--46819586	21	3.2	21	76	15	61	2	17	2	76	1.04
46820490--46820534	12	3.8	12	85	14	58	13	6	8	71	1.31
46820490--46820523	13	2.6	13	85	0	50	14	5	8	70	1.31
46821728--46821787	17	3.6	16	74	17	50	26	28	10	35	1.89
46827941--46828015	36	2.1	36	94	0	132	32	20	12	36	1.89
46832034--46832170	9	14.2	9	68	17	62	0	0	75	22	0.89
46832033--46832076	20	2.3	19	84	4	52	0	2	84	13	0.73
46832033--46832156	39	3.2	38	77	12	117	0	0	75	22	0.90
46832039--46832155	40	2.9	38	78	12	110	0	0	74	23	0.93
46832105--46832158	14	4.0	14	76	13	60	1	0	75	22	0.89
46832045--46832114	8	8.8	8	72	12	54	0	1	72	25	0.92
46835475--46835546	29	2.5	30	86	8	96	37	19	20	22	1.94
46841956--46842109	28	5.5	28	94	0	256	33	27	12	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46841956--46842134	56	3.2	55	89	3	259	33	27	12	25	1.93
46849067--46849134	33	2.1	33	91	0	109	48	11	19	20	1.80
46860227--46860286	26	2.3	26	88	0	84	38	28	8	25	1.84
46860389--46860524	27	5.1	28	75	10	115	23	22	19	34	1.96
46863672--46863703	12	2.7	12	100	0	64	12	6	0	81	0.87
46864873--46864915	14	3.1	14	86	6	61	51	9	0	39	1.34
46868027--46868100	21	3.6	21	71	22	59	6	20	1	71	1.16
46870218--46870252	19	1.9	18	88	11	54	11	5	5	77	1.12
46870233--46870274	11	3.7	11	90	3	66	14	4	2	78	1.01
46870232--46870274	12	3.7	12	87	6	70	13	4	2	79	1.00
46871443--46871487	14	3.3	14	84	6	65	48	13	0	37	1.42
46871499--46871568	22	3.3	22	64	28	60	38	15	11	34	1.84
46871470--46871575	42	2.5	42	98	1	203	40	14	12	33	1.83
46877068--46877299	99	2.3	98	81	7	272	25	17	26	29	1.98
46877068--46877312	49	4.9	49	82	4	267	26	17	26	29	1.98
46880301--46880359	15	4.0	15	80	10	68	8	15	16	59	1.60
46882023--46882268	49	5.0	49	83	3	269	26	18	27	27	1.98
46884545--46884604	26	2.3	26	85	0	75	35	26	11	26	1.91
46884708--46884822	27	4.3	27	83	4	126	21	23	20	34	1.96
46886449--46886499	11	4.9	11	83	9	63	31	11	27	29	1.92
46905235--46905371	56	2.4	56	93	0	229	33	24	15	27	1.95
46906498--46906524	11	2.5	11	100	0	54	62	22	0	14	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46908954--46908981	11	2.5	11	100	0	56	10	32	28	28	1.90
46929555--46929619	20	3.3	19	73	16	51	38	16	21	23	1.93
46932474--46932511	20	1.9	20	89	10	60	50	21	13	15	1.78
46937349--46937614	40	6.7	40	96	0	480	22	28	19	29	1.98
46946142--46946408	40	6.7	40	96	0	489	22	28	20	29	1.98
46949004--46949047	21	2.0	22	86	4	63	34	34	6	25	1.82
46963619--46963705	27	3.3	26	87	9	133	28	14	12	43	1.83
46963619--46963694	24	3.0	24	92	5	116	30	15	11	42	1.83
46965947--46966079	40	3.3	39	79	9	133	28	15	23	32	1.95
46966028--46966127	41	2.4	42	81	5	114	26	18	26	30	1.98
46973484--46973655	46	3.8	44	78	10	175	22	19	29	29	1.98
46973476--46973647	93	1.8	93	89	0	272	21	20	29	29	1.98
46978390--46978437	14	3.4	14	85	0	60	43	6	31	18	1.75
46979657--46979683	13	2.1	13	100	0	54	51	29	7	11	1.64
46989653--46989699	10	4.7	10	79	7	51	10	4	4	80	0.98
46989653--46989699	20	2.3	20	96	0	85	10	4	4	80	0.98
46990051--46990098	14	3.4	14	85	0	60	43	6	31	18	1.75
46993737--46993786	18	3.1	15	78	18	55	72	0	20	8	1.10
47001061--47001219	43	3.7	43	73	12	130	23	18	26	32	1.97
47001922--47001968	11	4.6	10	80	12	51	19	2	27	51	1.58
47007780--47007808	14	2.1	14	100	0	58	37	13	20	27	1.91
47013099--47013146	15	3.3	15	73	5	53	43	27	0	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014448--47014497	18	2.8	18	84	0	64	56	0	28	16	1.41
47014445--47014522	24	3.2	24	79	0	93	57	0	28	14	1.37
47016978--47017022	14	3.3	14	78	6	56	35	0	15	48	1.45
47018004--47018051	15	3.3	15	73	5	53	43	27	0	29	1.55
47022757--47022800	21	2.2	20	83	4	52	65	4	22	6	1.35
47037167--47037501	27	12.4	27	82	5	302	31	9	19	38	1.85
47037497--47037600	27	3.9	27	79	5	93	31	22	16	29	1.95
47037490--47037599	54	2.0	54	82	6	134	31	21	17	29	1.96
47045588--47045714	42	3.0	42	85	4	168	29	25	13	30	1.94
47045671--47045792	46	2.6	47	84	8	160	31	25	13	29	1.94
47045671--47045804	47	2.8	48	81	13	168	32	25	13	28	1.93
47045827--47046093	31	8.6	31	89	1	374	27	29	14	27	1.96
47046069--47046197	50	2.5	51	87	7	183	25	20	16	37	1.93
47050447--47050531	40	2.1	40	97	0	161	41	10	14	34	1.80
47061087--47061273	6	30.8	6	73	14	152	48	14	17	19	1.81
47061066--47061273	30	7.1	29	79	10	201	48	14	17	19	1.81
47061066--47061247	24	7.5	24	73	12	95	49	14	17	19	1.80
47061087--47061269	85	2.2	85	94	0	321	48	14	16	19	1.81
47061391--47061456	27	2.5	26	85	7	87	37	22	22	16	1.93
47061391--47061464	27	2.8	27	78	13	82	36	21	24	17	1.95
47061415--47061472	27	2.1	27	84	6	73	36	27	20	15	1.93
47061629--47061687	22	2.7	22	81	0	64	32	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47061775--47061857	27	3.1	26	84	5	103	38	21	20	19	1.93
47062056--47062244	27	7.0	27	87	0	225	25	20	19	34	1.96
47062056--47062251	54	3.6	54	85	2	250	27	19	18	34	1.95
47062256--47062935	27	25.2	27	84	3	827	40	9	22	27	1.84
47064931--47065115	6	30.8	6	74	18	163	48	14	16	20	1.80
47064910--47065115	30	7.1	29	78	14	203	48	14	16	20	1.81
47064931--47065115	83	2.2	85	94	2	329	48	14	16	20	1.80
47065233--47065298	27	2.5	26	85	7	87	37	22	22	16	1.93
47065233--47065306	27	2.8	27	78	13	82	36	21	24	17	1.95
47065257--47065314	27	2.1	27	84	6	73	36	27	20	15	1.93
47065615--47065697	27	3.1	26	86	5	103	37	20	22	19	1.94
47065896--47066091	27	7.3	27	81	0	203	26	19	18	36	1.94
47065899--47066091	81	2.4	81	83	3	235	26	19	17	36	1.94
47066113--47066531	27	15.5	27	81	8	415	40	9	21	28	1.84
47066104--47066531	81	5.3	80	84	3	491	40	8	21	28	1.83
47066112--47066531	54	7.8	54	83	3	481	40	9	21	28	1.84
47068513--47068641	30	4.3	29	82	10	136	48	13	17	19	1.80
47068539--47068710	79	2.2	79	95	0	308	47	13	17	20	1.82
47068618--47068710	30	3.1	30	87	1	132	47	13	17	21	1.82
47068534--47068689	6	25.8	6	77	15	153	48	13	17	20	1.80
47068832--47068887	27	2.1	26	86	3	76	35	25	23	16	1.94
47068837--47068905	27	2.6	27	81	4	68	36	20	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47069216--47069298	27	3.1	26	84	5	94	38	20	21	19	1.93
47069454--47069517	27	2.4	28	76	7	69	37	26	18	17	1.93
47069496--47069692	54	3.6	54	87	1	261	25	18	19	36	1.95
47069497--47069692	27	7.3	27	84	1	232	26	18	19	35	1.95
47069697--47070376	27	25.2	27	87	3	838	40	9	22	26	1.85
47074845--47074902	10	5.7	10	76	11	64	31	27	12	29	1.92
47079992--47080164	46	3.8	45	76	10	161	23	20	27	28	1.99
47079985--47080156	93	1.8	93	87	0	254	22	21	27	27	1.99
47080305--47080358	20	2.7	20	82	0	63	24	20	18	37	1.94
47080305--47080378	30	2.5	30	86	8	98	21	20	18	39	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343