genome.fa.s10.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  111  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37406123--37406199	31	2.5	31	95	0	136	28	25	18	27	1.98
37406223--37406314	42	2.2	42	96	0	166	39	21	11	27	1.89
37406459--37406607	26	5.8	26	90	2	212	25	20	24	30	1.99
37406657--37406713	20	3.0	20	87	10	75	33	19	8	38	1.82
37407415--37407514	27	3.7	27	82	7	123	22	23	23	32	1.98
37407555--37407638	27	3.0	27	74	17	82	33	10	16	39	1.83
37407646--37407744	27	3.7	27	78	8	103	29	9	20	41	1.83
37407773--37407970	27	7.3	27	87	3	256	38	8	24	28	1.84
37407773--37407970	54	3.7	54	90	2	283	38	8	24	28	1.84
37407773--37407970	81	2.4	81	89	0	288	38	8	24	28	1.84
37417534--37417610	38	2.0	38	97	0	145	20	12	6	59	1.55
37432724--37432770	8	5.9	8	75	9	51	44	23	4	27	1.72
37438706--37438746	20	2.0	20	100	0	82	34	4	31	29	1.79
37444330--37444375	18	2.6	18	100	0	92	19	19	15	45	1.85
37446774--37446830	30	1.9	29	85	3	78	57	14	14	14	1.65
37449789--37449937	46	3.2	46	74	12	151	30	29	18	21	1.97
37450858--37450882	13	1.9	13	100	0	50	32	16	16	36	1.90
37452455--37453068	49	12.6	49	93	2	987	33	8	28	29	1.86
37452455--37453068	100	6.3	98	93	3	987	33	8	28	29	1.86
37467273--37467351	37	2.1	37	90	0	122	25	31	18	24	1.98
37467470--37467940	47	10.1	47	91	1	687	28	29	9	32	1.89
37471383--37471608	40	5.9	39	82	9	252	25	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37471444--37471608	40	4.2	40	90	6	259	26	27	21	24	2.00
37471455--37471606	76	2.0	76	94	2	270	25	28	21	25	1.99
37471911--37471989	29	2.7	29	86	5	106	27	32	15	24	1.95
37473878--37473956	37	2.1	37	90	0	122	25	31	18	24	1.98
37474075--37474550	47	10.1	47	93	0	709	27	30	9	31	1.89
37477016--37477189	46	3.8	46	77	13	185	21	20	29	28	1.98
37484554--37484726	46	3.8	46	78	14	194	20	20	30	29	1.97
37490733--37490837	40	2.6	40	87	3	140	31	20	21	26	1.98
37490752--37490889	40	3.5	40	86	5	163	26	18	25	29	1.98
37498211--37498392	46	4.0	46	91	0	276	24	30	9	35	1.87
37498226--37498424	92	2.2	91	84	5	258	24	31	10	34	1.88
37498366--37498737	47	8.1	47	87	4	472	26	28	10	34	1.89
37498456--37498530	22	3.3	21	68	17	60	28	29	10	32	1.90
37498623--37498701	40	2.0	40	94	0	140	25	25	12	36	1.91
37502547--37502646	28	3.5	28	81	8	130	32	30	17	21	1.95
37502574--37502673	29	3.5	29	79	8	114	30	31	16	23	1.96
37502547--37502707	57	2.8	57	88	0	214	30	29	18	22	1.97
37502735--37503189	40	11.4	40	94	0	775	25	27	21	24	1.99
37504640--37504822	46	4.0	46	91	0	267	24	31	9	33	1.88
37504838--37505128	47	6.2	47	93	0	492	26	28	11	32	1.91
37504888--37504960	22	3.2	22	65	24	60	24	30	13	31	1.94
37504841--37505202	141	2.4	147	87	6	529	25	29	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37505115--37505142	14	2.0	14	100	0	56	35	28	0	35	1.58
37505069--37505189	61	2.0	61	100	0	242	27	28	9	34	1.89
37506479--37506650	46	3.8	45	80	11	215	21	21	27	29	1.99
37506476--37506645	92	1.8	92	96	0	313	21	21	28	28	1.99
37513916--37514085	45	3.7	45	76	14	195	22	21	27	28	1.99
37513912--37514080	92	1.8	92	93	2	295	21	21	28	28	1.99
37517487--37517572	43	2.0	43	90	0	136	27	32	16	23	1.96
37525244--37525465	40	5.6	40	90	1	340	22	22	26	28	1.99
37531970--37532220	40	6.3	40	82	5	314	27	27	21	22	1.99
37531970--37532220	79	3.2	80	92	4	393	27	27	21	22	1.99
37540458--37540714	40	6.4	40	83	4	333	27	28	21	22	1.99
37540458--37540714	80	3.2	80	93	2	412	27	28	21	22	1.99
37544640--37544726	38	2.3	38	97	0	165	26	2	31	40	1.68
37546099--37546263	40	4.1	40	92	1	260	21	22	27	29	1.99
37547745--37547857	40	2.8	40	86	0	154	32	23	23	20	1.98
37557563--37557740	27	6.6	27	83	3	205	26	15	28	29	1.96
37557564--37557719	82	1.9	81	88	3	233	26	15	28	29	1.96
37557560--37557740	82	2.2	81	83	2	229	27	15	27	29	1.96
37565598--37565775	27	6.6	27	83	3	205	26	15	28	29	1.96
37565599--37565754	82	1.9	81	88	3	233	26	15	28	29	1.96
37565595--37565775	82	2.2	81	83	2	229	27	15	27	29	1.96
37570963--37571043	32	2.5	32	84	4	110	24	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37585114--37585213	39	2.6	38	83	1	119	37	5	7	51	1.51
37593490--37593666	51	3.5	51	85	7	227	25	29	15	28	1.96
37596427--37596727	47	6.4	47	88	0	422	28	30	8	32	1.87
37596427--37596727	94	3.2	94	93	0	476	28	30	8	32	1.87
37598753--37598822	27	2.6	27	95	2	113	31	28	12	27	1.93
37598753--37598850	28	3.5	28	90	2	135	31	28	13	26	1.94
37606777--37606846	27	2.6	27	95	2	113	31	28	12	27	1.93
37606777--37606874	28	3.5	28	90	2	135	31	28	13	26	1.94
37615928--37616088	48	3.5	47	71	13	127	26	19	24	29	1.99
37630416--37630573	39	4.1	38	77	18	107	22	22	30	25	1.99
37630433--37630650	39	5.6	41	86	8	287	22	22	28	26	1.99
37630433--37630650	117	1.9	118	86	8	320	22	22	28	26	1.99
37638905--37639125	40	5.6	40	83	7	247	22	22	28	26	1.99
37638909--37639125	80	2.7	80	88	2	296	21	23	29	25	1.99
37641562--37641706	40	3.6	40	96	0	272	24	28	23	23	2.00
37647874--37648026	40	3.8	40	98	0	297	24	28	23	22	1.99
37650958--37651135	27	6.7	27	88	2	234	26	14	17	41	1.88
37650969--37651128	52	3.0	52	88	1	230	26	13	18	41	1.87
37650958--37651135	79	2.2	81	87	2	261	26	14	17	41	1.88
37657368--37657495	28	4.5	28	87	2	166	28	13	25	32	1.93
37657368--37657495	57	2.2	57	87	2	177	28	13	25	32	1.93
37665411--37665538	28	4.5	28	88	2	175	28	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37665411--37665538	57	2.2	57	88	2	186	28	12	25	32	1.92
37667162--37667312	40	3.8	40	85	3	214	29	29	19	21	1.98
37667162--37667313	80	1.9	80	90	2	243	28	28	20	21	1.98
37675082--37675298	40	5.4	40	86	3	253	26	27	21	24	1.99
37680657--37680710	21	2.6	21	82	5	65	24	29	24	22	1.99
37702564--37702682	40	3.0	40	87	0	166	35	16	30	17	1.93
37702583--37702648	20	3.3	20	68	8	53	31	16	33	18	1.93
37702597--37702657	20	3.0	20	69	9	52	34	14	29	21	1.93
37705595--37705646	27	2.0	26	84	3	68	26	23	19	30	1.98
37706310--37706371	31	2.0	32	87	3	90	20	22	20	35	1.96
37717461--37717503	20	2.1	21	86	4	61	32	2	6	58	1.38
37725914--37725977	24	2.7	24	74	13	60	37	3	29	29	1.73
37729706--37729793	39	2.3	39	88	2	124	37	6	5	50	1.53
37732476--37732648	46	3.7	46	76	10	190	23	20	26	29	1.99
37732472--37732643	93	1.8	93	91	0	281	22	20	27	28	1.99
37743211--37743269	31	1.9	31	100	0	118	28	25	16	28	1.97
37743211--37743289	31	2.5	31	89	4	106	26	24	17	31	1.97
37743313--37743404	42	2.2	42	90	0	139	34	20	14	30	1.92
37743550--37743699	26	5.8	26	92	1	216	27	22	22	28	1.99
37743749--37743815	20	3.3	20	93	4	109	31	19	10	38	1.85
37743851--37743898	25	1.9	25	82	0	60	29	14	20	35	1.93
37744856--37745137	27	10.4	27	80	5	165	35	8	23	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37744856--37745137	54	5.2	54	75	5	194	35	8	23	33	1.84
37744644--37745056	27	15.2	27	75	9	198	31	8	20	38	1.83
37744925--37745056	55	2.4	53	80	7	149	31	7	21	39	1.82
37744925--37745042	28	4.3	28	84	7	120	30	7	20	41	1.80
37744783--37745149	190	1.9	189	84	4	490	32	8	22	35	1.86
37744617--37745148	27	19.6	27	75	8	161	32	8	21	37	1.84
37758984--37759036	28	1.9	27	88	3	79	22	41	18	16	1.90
37759983--37760156	49	3.6	48	75	8	156	25	27	19	28	1.99
37762571--37762927	46	7.6	48	71	14	158	25	28	18	27	1.98
37762765--37762930	46	3.6	47	79	4	185	24	28	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343