genome.fa.s10.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  166  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54995407--54995656	88	2.8	86	81	7	283	27	27	20	25	1.99
54995450--54995656	45	4.7	44	85	4	267	27	28	20	24	1.99
54996458--54996598	47	3.0	46	91	3	212	47	13	11	27	1.77
55003135--55003323	45	4.3	45	84	9	221	25	25	21	26	1.99
55003128--55003323	88	2.2	87	85	5	252	25	26	20	27	1.99
55003164--55003340	45	4.0	45	86	2	232	26	25	21	26	1.99
55004144--55004285	47	3.0	47	91	3	225	45	14	11	28	1.80
55008746--55008920	46	3.8	46	73	13	160	29	28	20	21	1.98
55008755--55008924	93	1.8	93	92	0	286	28	28	20	22	1.99
55011248--55011286	21	1.9	20	84	5	51	43	0	12	43	1.42
55012875--55012934	25	2.4	25	100	0	120	43	18	20	18	1.88
55017297--55017409	34	3.3	34	79	7	120	37	20	6	36	1.78
55017295--55017408	36	3.2	36	81	8	135	37	20	6	35	1.77
55019916--55020044	46	2.8	46	94	2	215	30	29	20	19	1.97
55025358--55025391	15	2.3	15	89	0	50	32	0	11	55	1.36
55027201--55027313	34	3.3	34	84	2	145	36	21	6	36	1.78
55027199--55027312	36	3.2	36	86	3	160	36	21	6	35	1.78
55028947--55029148	43	4.7	43	83	2	262	28	26	18	26	1.98
55029864--55029915	28	1.9	26	84	7	68	51	5	5	36	1.50
55030944--55031017	31	2.4	31	97	0	139	27	25	17	29	1.97
55031041--55031132	42	2.2	42	92	0	148	34	21	14	29	1.93
55031277--55031451	26	6.8	26	90	0	255	26	22	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55032254--55032341	27	3.3	27	90	4	126	21	26	19	32	1.97
55032404--55032682	27	10.3	27	75	11	106	30	8	20	40	1.83
55032404--55032668	54	4.9	54	76	9	166	30	9	19	41	1.82
55032490--55032682	54	3.6	53	77	7	210	29	8	21	40	1.82
55032518--55032668	80	1.9	80	84	5	207	29	9	19	41	1.83
55032660--55032763	27	3.9	27	90	0	145	39	9	22	28	1.85
55032598--55032776	54	3.3	54	79	1	153	32	8	21	36	1.84
55032598--55032774	27	6.6	27	85	1	131	33	8	22	36	1.84
55032661--55032763	54	1.9	54	91	0	170	38	9	22	29	1.86
55035961--55036212	33	7.7	33	79	2	303	39	20	11	28	1.87
55035922--55036206	65	4.4	65	90	0	426	37	20	11	29	1.88
55036215--55036284	29	2.4	29	92	0	113	25	30	7	37	1.83
55044383--55044469	27	3.2	27	75	6	86	31	25	14	28	1.95
55046709--55046850	70	2.0	70	98	0	275	32	21	16	29	1.95
55049129--55049167	20	2.1	18	90	9	60	58	0	7	33	1.26
55052090--55052420	49	6.8	49	85	6	395	26	17	26	29	1.98
55064673--55064727	20	2.8	20	88	0	83	23	27	0	49	1.51
55066576--55066614	16	2.4	16	91	0	60	46	17	23	12	1.83
55066829--55066949	29	4.2	28	80	2	125	29	15	28	26	1.96
55068445--55068519	35	2.1	35	95	0	132	49	12	0	38	1.40
55069999--55070170	46	3.7	46	79	13	208	27	28	22	21	1.99
55070004--55070174	93	1.8	93	94	0	306	27	29	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55070788--55070831	22	2.0	22	90	0	70	50	27	4	18	1.66
55072150--55072197	24	2.0	24	96	4	89	41	29	8	20	1.81
55077401--55077572	46	3.7	46	79	13	208	27	28	22	21	1.99
55077406--55077576	93	1.8	93	94	0	306	27	29	22	21	1.99
55080038--55080096	30	2.0	30	86	6	84	62	15	8	13	1.53
55080038--55080097	15	4.0	15	74	8	59	63	15	8	13	1.51
55083104--55083421	49	6.5	49	89	5	466	29	27	16	25	1.97
55089665--55089777	55	2.1	55	98	0	217	58	16	9	15	1.62
55095785--55095825	14	2.9	15	85	7	50	39	41	0	19	1.52
55095864--55095950	7	12.0	7	74	7	66	41	35	2	20	1.65
55095854--55095927	15	4.9	15	75	17	55	37	37	1	22	1.63
55095846--55095935	38	2.4	38	75	14	89	38	36	3	21	1.70
55096259--55096309	15	3.5	15	75	5	50	47	27	1	23	1.63
55096448--55096533	38	2.2	38	84	8	111	17	1	30	51	1.53
55096550--55096720	41	4.2	41	78	5	170	22	21	17	38	1.93
55096550--55096720	79	2.1	80	81	7	195	22	21	17	38	1.93
55096700--55096752	23	2.3	23	86	0	70	13	16	20	49	1.79
55099208--55099286	31	2.5	31	89	0	131	26	25	17	30	1.97
55099310--55099401	42	2.2	42	88	0	130	34	19	14	31	1.91
55099546--55099643	26	3.8	26	86	1	144	24	24	24	26	2.00
55099546--55099643	52	1.9	51	91	2	160	24	24	24	26	2.00
55100446--55100510	27	2.4	27	89	0	103	16	26	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55100564--55100766	27	7.4	27	73	8	117	33	7	20	37	1.81
55100541--55100766	54	4.1	54	76	4	193	33	8	20	37	1.83
55100717--55100928	27	7.9	27	87	2	246	39	7	24	28	1.82
55100717--55100928	81	2.6	81	83	1	273	39	7	24	28	1.82
55100934--55101023	27	3.3	27	82	3	110	33	10	16	40	1.82
55103797--55103917	42	2.8	43	78	5	138	27	20	24	27	1.99
55106693--55106731	10	3.8	10	93	6	69	30	17	17	33	1.94
55106693--55106732	21	1.9	21	100	0	80	30	17	17	35	1.93
55106695--55106740	21	2.2	21	92	0	74	34	19	15	30	1.93
55117657--55117709	27	2.0	27	92	0	88	35	15	15	33	1.88
55124657--55124820	39	4.2	39	91	1	240	17	20	28	33	1.95
55126531--55126573	21	1.9	23	86	13	63	9	41	30	18	1.82
55128855--55128907	27	2.0	27	88	0	79	33	18	15	32	1.92
55139656--55139709	27	2.0	27	85	0	72	33	20	16	29	1.95
55139774--55139807	5	6.8	5	100	0	68	41	17	20	20	1.91
55139778--55139825	10	4.3	12	89	5	50	33	16	22	27	1.96
55161079--55161148	33	2.1	33	86	0	95	27	25	22	24	2.00
55161117--55161176	28	2.2	27	81	3	66	30	26	23	20	1.98
55161311--55161382	27	2.7	27	78	4	83	37	19	23	19	1.94
55161323--55161397	27	2.8	26	84	6	87	36	20	22	21	1.96
55161523--55161629	27	4.0	26	79	7	90	25	22	18	33	1.97
55161538--55161642	27	3.9	27	79	7	106	22	20	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55161660--55161725	27	2.4	27	87	0	87	33	12	18	36	1.88
55161680--55161888	27	7.7	27	76	6	100	31	9	18	41	1.81
55161680--55161762	28	3.0	28	82	8	91	33	8	14	43	1.76
55161890--55161959	27	2.6	27	86	0	95	28	22	17	31	1.96
55164474--55164544	26	2.7	27	88	4	108	28	18	19	33	1.95
55169079--55169111	15	2.3	15	89	5	50	54	30	6	9	1.56
55176529--55176718	95	2.0	96	89	1	292	27	22	27	22	1.99
55176538--55176724	48	3.9	48	81	2	225	27	22	27	22	1.99
55176923--55177228	48	6.5	48	82	6	274	26	17	29	26	1.97
55176912--55177228	96	3.4	95	80	9	305	26	17	29	26	1.98
55176916--55177228	144	2.2	139	80	9	341	25	17	29	26	1.98
55192223--55192252	9	3.4	9	95	4	53	36	10	13	40	1.78
55193443--55193477	16	2.1	17	89	5	54	17	20	14	48	1.81
55195891--55195927	10	3.8	10	86	13	51	72	0	2	24	0.97
55199075--55199442	183	2.0	184	95	0	666	45	11	12	29	1.77
55201528--55201681	67	2.3	67	91	4	249	20	28	21	29	1.98
55205395--55205551	27	5.8	27	86	3	181	30	21	7	40	1.81
55205395--55205553	54	2.9	54	84	1	212	30	20	7	40	1.80
55205403--55205551	82	1.8	80	86	2	217	31	19	7	41	1.79
55205502--55205803	27	11.1	27	75	10	132	41	18	8	32	1.81
55205382--55205580	82	2.5	80	79	1	209	34	20	7	37	1.81
55205544--55205795	54	4.6	55	78	8	221	42	17	8	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55205544--55205750	81	2.6	80	78	7	222	42	17	8	30	1.80
55205539--55205812	27	10.1	26	76	11	140	41	16	9	32	1.80
55205853--55205930	27	2.9	27	75	11	79	37	20	20	21	1.95
55206638--55206704	20	3.3	20	89	4	100	40	10	17	31	1.84
55206754--55206837	25	3.4	25	86	6	118	28	21	23	26	1.99
55206970--55207061	42	2.2	42	88	0	130	29	14	20	35	1.92
55207089--55207153	30	2.2	30	85	0	85	32	18	20	29	1.96
55207105--55207161	30	1.9	30	100	0	114	28	19	22	29	1.98
55219298--55219328	16	1.9	16	93	0	53	25	25	19	29	1.99
55219559--55219637	32	2.5	32	91	4	124	24	18	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343