genome.fa.s10.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  112  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37766820--37767013	51	3.8	51	88	2	284	30	24	11	33	1.91
37767037--37767128	28	3.4	27	82	13	118	25	26	15	33	1.95
37767050--37767126	24	3.0	26	86	9	104	24	23	15	36	1.94
37771462--37771585	41	2.9	44	79	7	155	29	26	18	25	1.98
37771438--37771583	41	3.4	43	78	7	154	26	27	19	26	1.99
37774478--37774643	55	3.0	55	98	0	314	29	20	22	27	1.99
37777754--37778010	39	6.5	39	91	1	381	29	27	22	19	1.98
37780751--37780898	51	2.9	51	96	0	269	27	25	14	32	1.95
37780922--37780984	28	2.2	28	91	5	101	26	26	12	33	1.93
37784327--37784370	23	1.9	23	86	9	63	47	6	29	15	1.72
37787576--37787638	31	2.0	31	96	0	117	47	12	3	36	1.58
37790546--37790619	6	12.3	6	89	0	103	36	12	47	4	1.60
37790648--37790769	9	12.9	9	68	10	73	36	14	28	20	1.92
37790646--37790723	30	2.6	30	85	0	102	35	14	29	20	1.92
37790708--37790783	15	4.9	15	71	9	62	35	14	28	21	1.92
37790696--37790789	24	3.9	24	77	0	80	35	12	28	23	1.92
37790676--37790789	30	3.8	30	77	2	104	35	13	28	21	1.91
37790636--37790789	21	7.0	21	69	11	76	36	14	28	20	1.92
37791105--37791158	23	2.4	23	96	3	101	35	24	3	37	1.73
37794350--37794521	93	1.8	93	90	2	274	27	29	20	22	1.98
37794342--37794510	46	3.7	46	75	10	182	29	28	19	21	1.98
37801443--37801491	23	2.1	23	100	0	98	51	16	16	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37801627--37801748	39	3.1	39	78	0	136	28	17	30	23	1.97
37804585--37804695	27	4.1	27	86	5	145	37	22	23	16	1.93
37806094--37806170	24	3.2	24	86	0	109	23	42	1	32	1.62
37812443--37812575	27	5.0	26	87	4	149	39	20	22	17	1.92
37814389--37814459	28	2.5	27	80	8	72	25	19	25	29	1.99
37818874--37818956	34	2.4	34	89	0	121	21	27	24	26	1.99
37848420--37848583	46	3.5	44	77	10	134	29	20	27	22	1.98
37849654--37849689	13	2.8	13	95	0	63	22	27	38	11	1.88
37853706--37854026	47	6.8	45	68	18	174	28	19	28	22	1.98
37853701--37854026	94	3.5	94	78	7	349	28	19	28	23	1.98
37868705--37868764	27	2.3	26	82	2	66	35	20	21	23	1.96
37868732--37868873	67	2.1	67	82	7	169	31	21	27	19	1.97
37877804--37877881	39	2.0	40	82	7	97	26	26	19	26	1.99
37878956--37878980	13	1.9	13	100	0	50	0	8	4	88	0.64
37880269--37880319	13	3.9	13	100	0	102	15	29	39	15	1.89
37880681--37880707	14	1.9	14	100	0	54	22	7	11	59	1.56
37885213--37885384	93	1.8	93	88	2	265	29	30	19	20	1.97
37885205--37885374	46	3.7	46	74	14	161	30	30	19	20	1.97
37889530--37889837	94	3.3	94	74	9	268	27	19	28	24	1.98
37894455--37894575	47	2.6	47	79	11	140	29	17	29	23	1.97
37894560--37894608	25	1.9	26	91	4	82	28	28	24	18	1.98
37901164--37901336	46	3.8	44	78	13	179	22	17	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37901159--37901286	47	2.7	47	82	13	158	22	20	27	29	1.98
37901159--37901328	93	1.8	93	89	0	268	22	18	28	30	1.97
37907588--37907811	40	5.6	40	92	4	346	26	26	22	24	2.00
37912098--37912270	46	3.8	44	77	13	161	23	18	28	30	1.98
37912094--37912262	93	1.8	93	88	0	257	22	19	27	30	1.98
37915892--37916030	43	3.3	42	82	8	156	28	26	19	25	1.99
37920350--37920496	51	2.9	51	91	2	242	29	25	12	32	1.93
37920532--37920578	24	2.0	24	95	0	85	27	19	14	38	1.91
37928873--37928962	43	2.1	43	97	0	171	31	18	12	37	1.88
37929789--37929905	44	2.6	45	71	8	103	25	21	29	23	1.99
37931561--37931779	49	4.4	49	80	3	258	28	26	18	26	1.98
37931561--37931779	101	2.2	98	83	4	269	28	26	18	26	1.98
37932031--37932084	27	2.0	27	88	0	81	38	16	5	38	1.72
37937276--37937363	43	2.0	43	95	0	158	38	12	12	36	1.81
37939704--37939840	49	2.7	51	83	7	181	28	26	20	24	1.99
37942285--37942310	13	2.0	13	100	0	52	38	23	38	0	1.55
37952674--37952831	39	4.1	39	88	0	217	27	22	20	29	1.99
37957618--37957838	49	4.6	48	78	13	215	27	19	29	23	1.98
37957610--37957838	96	2.4	94	81	8	239	26	20	29	23	1.99
37962485--37962509	12	2.1	12	100	0	50	16	8	16	60	1.58
37963236--37963357	61	2.0	61	98	0	235	27	19	28	24	1.99
37963329--37963505	47	3.9	44	76	10	151	27	20	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37968609--37968703	43	2.2	43	83	3	111	30	21	17	30	1.96
37969572--37969601	15	2.0	15	93	0	51	26	0	16	56	1.40
37973473--37973644	40	4.3	40	83	5	215	27	27	20	23	1.99
37977388--37978104	355	2.0	357	98	0	1384	33	23	16	27	1.95
37981822--37981997	40	4.4	40	84	5	225	26	27	22	23	2.00
37987030--37987210	40	4.6	40	88	2	258	25	24	23	25	2.00
37995711--37995840	43	3.0	43	80	2	154	21	18	27	32	1.97
37997836--37998024	40	4.7	40	92	3	294	24	22	26	26	2.00
38000885--38000958	37	2.0	37	97	0	139	17	28	8	45	1.77
38001001--38001255	55	4.8	54	82	7	256	22	23	17	36	1.94
38001046--38001248	108	1.9	110	84	4	277	24	23	17	34	1.96
38003602--38003647	18	2.6	18	82	0	56	45	10	19	23	1.82
38009616--38009754	39	3.5	39	85	2	181	31	17	30	20	1.96
38014615--38014770	27	5.8	27	89	0	195	29	22	7	40	1.82
38014615--38014770	54	2.9	54	88	0	231	29	22	7	40	1.82
38014615--38014770	81	1.9	81	88	0	231	29	22	7	40	1.82
38014750--38014997	27	9.2	27	76	8	130	39	20	8	30	1.83
38014602--38014836	54	4.4	54	79	1	175	34	22	7	35	1.82
38014764--38014970	80	2.6	81	85	2	265	40	20	9	29	1.83
38014791--38014969	54	3.3	53	85	4	225	40	21	9	28	1.84
38014791--38014972	81	2.3	81	87	2	251	40	21	9	28	1.84
38014819--38015074	54	4.7	53	76	9	191	39	18	10	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38014818--38014997	81	2.2	80	85	3	236	40	20	9	29	1.84
38015008--38015059	27	1.9	27	88	7	79	40	13	11	34	1.81
38015113--38015199	27	3.2	27	91	3	131	32	18	27	21	1.97
38015995--38016089	25	3.8	25	92	0	154	26	25	24	24	2.00
38015995--38016125	25	5.2	24	83	8	120	29	22	23	24	1.99
38015993--38016114	50	2.4	50	78	10	142	27	24	23	24	2.00
38016246--38016369	42	3.0	42	93	0	203	28	12	21	37	1.89
38016394--38016472	31	2.5	31	97	0	149	27	17	26	27	1.98
38018976--38019054	29	2.7	29	86	5	106	27	32	15	24	1.95
38023242--38023272	11	2.8	11	95	0	53	16	0	3	80	0.83
38024201--38024481	43	6.6	43	78	6	239	41	19	17	21	1.91
38024201--38024485	86	3.3	85	74	10	276	41	20	17	21	1.90
38025995--38026055	30	2.0	30	83	0	77	40	4	22	31	1.75
38032311--38032442	54	2.4	54	75	2	131	19	24	18	37	1.93
38038228--38038282	21	2.6	21	76	0	56	23	32	25	18	1.97
38039168--38039247	18	4.4	18	82	0	97	38	17	11	32	1.85
38039166--38039247	36	2.3	36	86	0	119	37	18	10	32	1.86
38040904--38040935	15	2.0	17	88	11	50	34	12	6	46	1.67
38041029--38041068	20	2.0	20	85	9	55	42	5	0	52	1.23
38050247--38050280	17	2.0	17	94	0	59	20	11	5	61	1.50
38053199--38053369	93	1.8	93	93	0	297	21	22	28	27	1.99
38053203--38053374	46	3.7	46	78	13	199	22	22	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38060735--38060908	46	3.7	46	80	14	221	21	21	28	28	1.99
38060732--38060903	94	1.8	94	96	0	317	20	22	29	27	1.99
38076679--38076707	14	2.0	15	93	6	51	3	0	55	41	1.17
38078220--38078259	18	2.2	18	86	0	53	22	20	15	42	1.88
38081613--38081640	13	2.2	13	100	0	56	35	14	7	42	1.73
38082915--38082946	16	2.0	16	100	0	64	43	12	18	25	1.85
38083213--38083434	47	4.7	47	76	15	203	23	29	18	28	1.98
38083307--38083430	46	2.7	45	85	9	153	24	29	20	26	1.99
38083217--38083470	140	1.8	139	82	8	327	24	27	18	29	1.98
38090878--38091018	57	2.5	57	85	0	183	31	24	16	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343