genome.fa.s10.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  152  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50366715--50366756	15	2.9	15	82	10	52	47	0	0	52	1.00
50366891--50367000	45	2.6	43	79	11	120	32	29	5	32	1.80
50366981--50367048	16	4.2	16	94	0	118	35	36	0	27	1.58
50375531--50375698	46	3.7	45	89	1	219	21	25	12	41	1.88
50375531--50375698	92	1.8	92	86	0	246	21	25	12	41	1.88
50378333--50378384	26	2.0	27	85	10	74	15	13	23	48	1.80
50381863--50383757	946	2.0	947	96	0	3479	29	14	21	34	1.93
50386526--50386569	21	2.1	21	83	8	54	25	9	2	63	1.35
50387297--50387370	28	2.6	28	93	0	121	24	16	32	27	1.96
50387297--50387383	28	3.1	28	89	0	102	22	17	33	26	1.96
50387699--50388144	27	16.6	27	85	2	488	38	20	10	30	1.86
50387968--50388186	27	8.1	27	80	9	96	38	19	12	28	1.89
50387703--50388186	107	4.5	108	81	5	306	38	20	11	30	1.88
50389718--50389781	30	2.2	29	94	2	110	25	18	25	31	1.98
50397105--50397168	30	2.2	29	86	8	85	26	18	18	35	1.94
50419305--50419381	39	1.9	39	89	2	118	25	22	27	24	2.00
50419266--50419405	40	3.5	40	80	11	135	24	24	28	22	1.99
50419318--50419416	39	2.5	39	85	4	101	25	22	28	24	1.99
50427570--50427838	46	5.7	47	75	11	187	23	30	18	28	1.98
50427589--50427882	94	3.1	91	75	15	237	23	29	18	28	1.98
50427758--50427882	47	2.6	48	80	10	150	24	28	18	29	1.98
50430114--50430147	13	2.6	13	95	0	59	5	26	35	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50438024--50438203	29	6.3	29	81	5	172	26	13	31	27	1.94
50438045--50438198	58	2.7	57	81	8	197	27	14	31	26	1.95
50451068--50451177	43	2.6	43	81	7	143	29	22	19	29	1.98
50458612--50458774	44	3.8	42	70	19	122	33	25	16	24	1.96
50459396--50459454	29	2.0	29	100	0	118	44	22	10	23	1.83
50460815--50460849	13	2.7	13	95	0	61	71	5	0	22	1.07
50461683--50461839	43	3.7	42	77	6	156	24	17	26	31	1.97
50469464--50469507	22	2.0	22	82	8	54	40	13	15	29	1.86
50469734--50469955	40	5.6	40	90	1	322	27	26	22	23	1.99
50479779--50479927	40	3.7	40	88	5	169	25	20	26	27	1.99
50487895--50488043	40	3.7	40	88	5	169	25	20	26	27	1.99
50528894--50528953	29	2.1	29	100	0	120	45	21	10	23	1.82
50530311--50530345	13	2.7	13	95	0	61	71	5	0	22	1.07
50531176--50531329	43	3.6	43	76	5	152	25	16	27	30	1.96
50551927--50551984	32	1.9	30	82	10	73	51	3	18	25	1.62
50564541--50566314	597	3.0	597	94	0	3120	38	22	12	26	1.90
50588527--50588612	29	3.0	29	77	19	108	26	32	15	25	1.95
50588837--50588874	16	2.4	16	95	0	67	7	18	21	52	1.70
50601671--50601792	47	2.6	47	92	0	190	36	13	25	25	1.92
50601771--50602075	55	5.6	54	79	8	334	35	16	24	23	1.95
50601778--50602075	108	2.7	109	90	2	456	34	16	24	24	1.95
50607203--50607281	28	2.8	28	86	0	104	34	11	25	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50608723--50608907	40	4.7	40	81	6	207	24	28	22	24	2.00
50616839--50617059	80	2.8	80	80	7	202	27	27	20	24	1.99
50616879--50617059	80	2.3	80	83	9	219	27	27	20	23	1.99
50616876--50617059	40	4.6	40	81	7	196	28	27	20	23	1.99
50624282--50624353	34	2.2	33	87	2	99	31	23	19	25	1.98
50627868--50628043	46	3.8	46	77	14	200	22	19	28	29	1.98
50627865--50628035	93	1.8	93	92	5	292	22	19	29	28	1.98
50630993--50631048	15	3.7	15	88	7	87	12	16	10	60	1.58
50633439--50633614	46	3.8	45	79	10	203	21	20	29	28	1.98
50633436--50633606	93	1.8	93	93	0	297	21	21	29	28	1.98
50637942--50638166	40	5.6	40	84	0	279	23	26	24	26	2.00
50650604--50650728	55	2.3	55	85	2	162	25	31	28	14	1.95
50670988--50671030	19	2.3	19	91	0	68	9	25	41	23	1.84
50671387--50671420	18	1.9	18	88	5	52	29	14	14	41	1.86
50674571--50674595	9	2.8	9	100	0	50	44	8	12	36	1.71
50683748--50683842	40	2.4	40	85	7	131	27	29	16	26	1.97
50687246--50687398	39	3.9	39	90	0	207	28	28	18	24	1.98
50687218--50687390	78	2.2	78	82	2	195	28	28	19	23	1.98
50705971--50706127	43	3.7	42	79	10	176	30	26	19	23	1.98
50705966--50706132	85	2.0	85	83	5	212	32	25	18	23	1.97
50713528--50713611	43	1.9	44	85	4	116	35	25	17	21	1.95
50725011--50725230	40	5.6	40	89	3	313	23	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50725011--50725230	78	2.8	79	90	3	336	23	21	26	29	1.99
50733455--50733635	40	4.6	40	89	3	251	23	21	25	28	1.99
50733455--50733635	79	2.3	79	87	3	249	23	21	25	28	1.99
50745967--50746270	46	6.6	44	73	14	170	25	28	19	26	1.99
50746004--50746267	46	5.7	46	76	8	211	23	28	20	27	1.99
50746048--50746279	94	2.5	94	78	5	229	24	28	19	27	1.99
50752556--50752684	38	3.4	38	86	1	177	23	19	26	31	1.98
50760186--50760265	38	2.1	38	90	0	124	23	21	23	31	1.98
50761287--50761469	46	4.0	46	94	0	312	24	31	9	34	1.88
50761443--50761728	47	6.1	47	93	0	457	26	28	11	33	1.91
50765729--50766134	47	8.6	47	93	1	659	29	30	8	32	1.87
50765729--50766135	192	2.2	190	92	2	678	29	30	8	32	1.87
50769336--50769390	25	2.2	25	90	6	85	27	30	12	29	1.93
50769554--50769909	40	8.9	40	90	0	552	25	30	22	21	1.98
50769550--50769911	80	4.5	80	96	0	663	26	30	22	21	1.98
50769550--50769911	159	2.3	160	96	0	663	26	30	22	21	1.98
50771388--50771556	46	3.7	46	98	0	320	23	32	9	34	1.87
50771388--50771601	92	2.3	91	87	4	270	23	32	9	33	1.88
50771544--50771828	47	6.1	47	93	1	457	26	28	11	33	1.91
50775892--50775972	27	3.0	27	79	0	90	35	18	19	25	1.95
50775953--50776108	27	5.8	27	81	5	156	38	23	8	28	1.85
50775953--50776113	54	3.0	54	82	5	200	37	22	9	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50776105--50776403	27	11.1	27	88	0	384	31	22	5	40	1.76
50776064--50776393	81	4.1	81	85	1	394	33	21	6	39	1.78
50776105--50776403	81	3.7	81	89	0	438	31	22	5	40	1.76
50776887--50776954	31	2.2	31	86	0	91	20	19	13	47	1.82
50776887--50776999	6	18.3	6	66	18	54	20	19	12	47	1.81
50776918--50776999	12	6.7	12	69	15	60	20	20	10	47	1.80
50776924--50776973	19	2.6	19	90	0	82	22	24	10	44	1.83
50780707--50780766	25	2.4	25	88	5	86	21	20	20	38	1.94
50780750--50780795	24	1.9	24	86	0	65	28	21	21	28	1.99
50787641--50787816	46	3.8	45	80	7	192	21	20	28	28	1.98
50787635--50787808	93	1.9	93	91	0	285	21	20	29	28	1.98
50794014--50794061	19	2.5	19	83	10	53	35	8	6	50	1.58
50795655--50795682	3	9.3	3	100	0	56	32	0	0	67	0.91
50801609--50801650	19	2.2	19	87	8	59	69	0	0	30	0.89
50805244--50805425	28	6.5	28	92	1	285	27	12	26	33	1.92
50813414--50813622	28	7.5	28	92	2	332	27	11	26	33	1.91
50816307--50816388	33	2.4	34	76	8	87	34	21	15	28	1.95
50816698--50816750	26	2.0	26	85	7	72	20	16	22	39	1.92
50817998--50818103	24	4.4	23	89	4	140	17	39	6	35	1.76
50819597--50819653	22	2.5	22	77	5	60	42	7	8	42	1.63
50819535--50819772	116	2.0	117	97	0	451	46	4	13	35	1.64
50819730--50819787	2	28.5	2	78	3	62	43	5	5	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50820606--50820634	14	2.1	14	100	0	58	41	6	13	37	1.72
50823075--50823199	48	2.6	48	81	5	153	27	17	28	26	1.98
50823184--50823217	17	2.0	17	88	0	50	23	14	32	29	1.94
50823201--50823520	48	6.6	48	81	3	320	28	17	26	27	1.98
50823088--50823313	113	2.0	113	89	0	344	26	16	27	28	1.97
50823201--50823512	96	3.2	96	87	1	410	28	16	26	27	1.97
50824645--50824691	25	1.9	24	86	4	67	74	2	17	6	1.12
50825282--50825369	37	2.4	37	98	0	167	30	14	21	32	1.94
50825969--50826151	79	2.3	82	84	7	234	24	21	27	26	1.99
50825969--50826153	40	4.7	40	83	6	225	23	21	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343