genome.fa.s10.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  93  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30893529--30893732	40	5.1	40	81	8	229	24	27	22	25	2.00
30900770--30900954	40	4.6	39	76	6	167	26	27	21	24	1.99
30902973--30903035	27	2.3	27	86	2	81	14	25	26	33	1.94
30904079--30904115	16	2.3	16	90	0	56	5	18	21	54	1.64
30908250--30908325	29	2.7	28	83	6	91	23	31	15	28	1.96
30908277--30908340	29	2.2	28	81	8	74	28	29	12	29	1.93
30920811--30920862	25	2.1	25	92	3	88	26	19	21	32	1.97
30920818--30920887	25	2.8	25	89	4	97	27	22	22	27	1.99
30946705--30946729	12	2.1	12	100	0	50	24	24	28	24	2.00
30953112--30953338	40	5.7	40	95	0	409	29	20	28	22	1.98
30956564--30956626	32	2.0	32	90	0	99	26	23	14	34	1.93
30958451--30958506	28	2.0	29	82	3	69	26	16	7	50	1.70
30958685--30958813	43	3.0	43	78	8	147	33	24	17	24	1.97
30961723--30961753	10	3.1	10	95	0	53	22	0	6	70	1.09
30961901--30962141	49	4.9	49	81	5	268	24	17	27	29	1.97
30962005--30962088	28	3.2	27	65	25	72	23	17	29	28	1.97
30965205--30965235	16	1.9	16	93	0	53	35	22	0	41	1.54
30965202--30965241	20	2.0	20	85	0	53	37	22	0	40	1.54
30965235--30965274	20	2.0	20	95	0	71	45	12	0	42	1.42
30965506--30965700	55	3.6	52	80	6	185	22	24	17	35	1.95
30972518--30972703	56	3.3	56	88	0	255	27	14	22	34	1.93
30975591--30975791	44	4.6	44	76	7	180	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30987227--30987448	40	5.6	40	92	1	349	26	22	27	24	2.00
30995160--30995194	18	1.9	18	94	0	61	45	14	20	20	1.85
30995514--30995631	27	4.4	27	79	2	121	41	18	16	23	1.89
31006112--31006137	12	2.2	12	100	0	52	50	7	0	42	1.31
31006584--31006694	27	4.0	27	85	4	114	28	13	26	31	1.94
31006584--31006693	54	2.0	56	80	7	127	29	12	26	31	1.93
31006584--31006680	27	3.5	27	90	2	131	26	13	28	30	1.94
31014407--31014504	27	3.5	28	90	2	135	26	13	28	31	1.94
31014435--31014517	27	3.0	27	87	5	96	30	12	25	32	1.92
31016339--31016418	15	5.4	15	76	7	74	13	16	10	60	1.59
31018779--31018906	29	4.5	29	87	6	165	32	27	12	28	1.93
31018778--31018906	57	2.3	57	87	2	188	31	27	12	27	1.93
31018779--31018906	28	4.5	28	89	2	175	32	27	12	28	1.93
31022028--31022199	93	1.8	93	85	2	238	22	18	29	30	1.97
31024858--31024976	27	4.4	27	86	0	157	33	18	21	26	1.96
31026897--31027008	27	4.2	26	83	7	116	40	24	22	13	1.89
31028448--31028507	24	2.5	24	100	0	120	28	38	0	33	1.57
31034760--31034871	27	4.1	27	82	10	131	38	24	23	14	1.92
31034760--31034871	54	2.1	54	85	6	147	38	24	23	14	1.92
31036288--31036334	24	2.0	24	91	0	76	23	38	2	36	1.67
31041496--31041667	27	6.4	27	90	0	254	34	19	20	25	1.96
31053494--31053617	47	2.7	45	79	13	135	29	18	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31053640--31053759	48	2.4	49	77	8	118	31	20	27	20	1.97
31054994--31055032	21	1.9	21	89	5	62	15	35	28	20	1.93
31057015--31057116	43	2.4	43	85	3	134	29	16	22	31	1.96
31057506--31057675	75	2.3	75	88	2	252	23	32	20	23	1.97
31059322--31059500	59	3.0	59	89	3	288	31	31	17	19	1.95
31064862--31065041	35	5.1	35	78	3	139	41	17	11	30	1.84
31064886--31065041	35	4.5	35	78	1	152	42	17	9	30	1.81
31070352--31070503	64	2.3	67	78	10	166	32	16	29	21	1.95
31075767--31075917	63	2.3	66	83	10	184	31	17	29	21	1.96
31079160--31080879	863	2.0	862	95	1	3081	36	10	20	32	1.87
31090970--31091033	28	2.3	28	88	0	101	21	14	34	29	1.93
31090982--31091050	28	2.4	28	85	2	84	28	13	33	24	1.93
31091350--31091762	27	15.7	27	79	8	377	40	19	8	31	1.81
31091349--31091750	53	7.6	53	76	11	353	40	18	8	31	1.81
31091636--31091674	20	2.0	20	100	0	78	46	12	10	30	1.75
31091608--31091697	47	1.9	47	93	0	153	42	17	7	32	1.78
31091527--31091763	128	1.9	128	84	1	323	40	20	8	31	1.81
31091582--31091722	74	1.9	74	86	2	203	42	17	7	32	1.77
31091687--31091834	27	5.5	27	79	4	104	39	18	12	30	1.87
31091657--31091816	81	2.0	81	80	4	180	39	19	10	31	1.84
31092316--31092383	27	2.6	27	95	2	120	25	23	30	20	1.98
31093775--31093872	35	2.8	35	85	0	133	44	18	8	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31103690--31103738	24	2.0	24	88	7	73	38	6	4	51	1.46
31110449--31110566	27	4.5	26	86	7	166	39	17	9	33	1.82
31110446--31110593	26	5.6	25	80	10	145	40	18	9	31	1.82
31110449--31110595	52	2.8	53	86	6	174	40	18	9	31	1.83
31110575--31110835	27	9.7	27	85	0	326	31	19	22	26	1.97
31110972--31111040	27	2.6	27	84	6	79	21	20	23	34	1.96
31111042--31111100	26	2.2	27	85	8	77	16	22	22	38	1.93
31111217--31111276	28	2.2	27	82	8	68	21	25	26	26	2.00
31116748--31116872	46	2.7	46	88	2	180	21	19	28	31	1.97
31117803--31117908	37	2.9	37	97	0	194	24	32	18	24	1.97
31118060--31118206	50	3.0	50	92	3	235	30	24	7	37	1.83
31118165--31118356	47	4.1	47	89	1	271	26	29	11	32	1.92
31122855--31122898	15	2.9	15	80	12	54	11	15	15	56	1.66
31125279--31125454	46	3.8	46	73	12	162	23	19	26	30	1.98
31125275--31125447	93	1.9	93	87	2	258	23	20	27	28	1.99
31130151--31130375	48	4.7	48	88	1	299	24	16	30	28	1.97
31137939--31138217	48	5.8	48	87	2	364	25	16	29	29	1.97
31145746--31145884	43	3.3	43	78	2	136	32	28	17	22	1.96
31147319--31147460	43	3.3	43	72	13	141	25	19	24	30	1.98
31149852--31149912	30	2.0	30	87	0	86	37	8	24	29	1.84
31168462--31168494	13	2.6	13	90	4	50	48	12	0	39	1.40
31170796--31170928	47	2.8	49	79	16	172	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31170799--31170944	46	3.2	46	79	11	156	28	28	20	21	1.98
31178333--31178504	93	1.8	93	96	0	317	27	29	21	20	1.98
31178326--31178501	46	3.8	46	79	12	216	28	29	21	20	1.98
31180637--31180665	8	3.6	8	100	0	58	27	0	34	37	1.57
31185118--31185301	40	4.6	40	82	6	196	23	20	27	28	1.99
31185118--31185298	80	2.3	81	83	9	221	23	20	27	27	1.99
31185199--31185348	40	3.8	38	80	10	131	25	22	28	24	1.99
31201584--31201721	40	3.5	39	86	6	165	24	28	23	23	2.00
31203603--31203684	43	1.9	42	85	2	110	28	18	21	31	1.97
31205115--31205140	13	2.0	13	100	0	52	15	30	38	15	1.88
31206240--31206296	21	2.7	19	75	17	51	24	7	1	66	1.26
31209284--31209317	13	2.5	13	90	9	50	23	38	29	8	1.85
31209213--31209319	55	1.9	55	81	3	126	30	29	27	12	1.92
31217055--31217124	27	2.6	27	90	2	104	31	27	12	28	1.93
31217055--31217152	28	3.5	28	87	2	126	31	27	13	27	1.94
31218768--31218920	43	3.6	43	78	6	150	28	16	24	31	1.96
31222771--31222817	24	2.0	23	87	4	67	34	25	21	19	1.96
31237673--31237850	40	4.5	40	88	3	227	24	23	28	24	2.00
31245741--31245918	40	4.5	40	86	6	229	23	21	28	26	1.99
31251716--31251748	12	2.6	13	85	9	50	9	45	0	45	1.35
31252580--31252644	28	2.3	28	89	0	94	33	27	7	30	1.85
31252751--31252839	28	3.1	28	87	4	126	22	23	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31259320--31259352	12	2.6	13	85	9	50	9	45	0	45	1.35
31260184--31260248	28	2.3	28	91	0	103	32	27	9	30	1.88
31260354--31260443	28	3.2	28	90	4	137	21	24	22	32	1.98
31260354--31260469	56	2.1	55	80	9	128	20	24	20	34	1.97
31267857--31268028	67	2.6	66	81	7	170	31	16	29	22	1.96
31267881--31268064	67	2.8	64	78	8	203	28	16	30	23	1.96
31299679--31300166	47	10.4	47	94	0	823	32	7	30	28	1.86
31300004--31300077	25	3.1	25	64	25	68	37	8	28	25	1.84
31301356--31301389	18	1.9	18	88	5	52	29	17	11	41	1.85
31302512--31302605	28	3.3	29	88	2	129	31	29	12	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343