genome.fa.s10.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  31  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507040--10507080	21	1.9	22	95	5	75	36	9	17	36	1.82
10512667--10512747	13	6.2	13	82	0	90	33	20	1	44	1.60
10512667--10512747	39	2.1	39	85	0	108	33	20	1	44	1.60
10531109--10531420	49	6.8	45	72	15	160	28	19	27	24	1.99
10531115--10531323	89	2.3	90	84	9	250	28	19	27	24	1.98
10531106--10531320	47	4.8	42	73	14	137	27	19	28	24	1.98
10532181--10532302	55	2.2	54	88	4	174	19	17	31	31	1.95
10541893--10542068	46	3.8	46	76	12	189	21	20	28	29	1.98
10541890--10542061	93	1.8	93	92	0	290	22	20	28	28	1.99
10545555--10545601	24	2.0	24	82	0	58	65	2	21	10	1.33
10548262--10548331	28	2.5	28	83	0	86	28	30	14	27	1.95
10556373--10556453	23	3.4	23	70	3	72	40	2	2	54	1.27
10556827--10556888	22	3.0	20	73	17	54	50	0	1	48	1.10
10559276--10559313	18	2.1	18	85	9	51	55	7	0	36	1.29
10561265--10561337	36	2.0	37	94	2	130	15	13	27	43	1.84
10566656--10566724	22	3.1	22	82	12	79	37	1	1	59	1.15
10566656--10566722	23	3.0	23	84	8	84	38	1	1	58	1.17
10569419--10569485	31	2.3	28	85	12	82	31	8	7	52	1.61
10571743--10571883	70	2.0	70	97	0	264	46	14	8	30	1.74
10574804--10574835	5	6.8	5	86	13	50	84	0	0	15	0.63
10582753--10582799	19	2.6	19	84	15	64	65	2	4	27	1.22
10582759--10582805	19	2.3	21	79	20	64	55	2	4	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10596872--10596926	21	2.6	21	85	5	67	18	27	34	20	1.95
10599898--10599935	18	2.1	18	100	0	76	39	0	21	39	1.53
10601052--10601105	23	2.4	22	84	3	63	29	24	11	35	1.90
10604837--10605070	35	6.7	34	84	3	288	32	24	12	30	1.92
10604839--10605070	70	3.3	70	87	3	333	32	24	12	31	1.92
10604839--10605070	105	2.2	105	89	1	349	32	24	12	31	1.92
10608715--10608835	6	20.2	6	100	0	242	49	17	0	33	1.47
10611465--10611553	46	1.9	46	86	0	124	33	8	24	32	1.87
10613122--10613241	39	3.1	39	85	0	168	14	17	33	35	1.90
10614086--10614187	43	2.4	43	89	0	150	17	28	35	18	1.94
10620210--10620260	24	2.1	24	96	0	93	29	23	31	15	1.95
10621653--10621714	31	2.1	30	82	17	76	29	17	8	45	1.77
10621857--10621920	25	2.6	25	71	14	60	26	21	25	26	2.00
10621847--10621954	50	2.2	48	81	3	126	26	19	27	25	1.99
10625294--10625342	19	2.7	20	78	15	52	46	2	4	46	1.33
10625352--10625389	12	3.7	10	83	16	51	47	0	0	52	1.00
10625338--10625389	22	2.3	22	87	9	70	44	0	0	55	0.99
10625780--10625902	61	2.0	61	93	3	212	39	14	5	39	1.70
10626892--10626920	13	2.2	13	100	0	58	51	6	0	41	1.28
10631564--10631671	23	4.7	23	82	5	128	43	36	2	17	1.64
10634389--10634483	35	2.7	35	76	11	86	41	1	5	52	1.31
10635248--10635343	40	2.5	38	80	9	104	33	37	14	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10635266--10635341	40	1.9	40	86	0	107	32	35	15	15	1.90
10641821--10641856	18	1.9	19	88	5	56	30	5	0	63	1.17
10648186--10648273	33	2.8	33	77	14	80	3	31	1	63	1.18
10648413--10648471	15	3.9	15	75	14	50	16	6	1	74	1.11
10654590--10654639	21	2.4	21	86	0	64	34	34	6	26	1.81
10656321--10656430	43	2.6	42	81	2	148	32	15	21	30	1.94
10659478--10659552	27	2.9	26	81	13	77	30	6	0	62	1.21
10659502--10659555	16	3.5	16	71	14	51	31	3	0	64	1.11
10663248--10663289	20	2.0	21	95	4	77	14	21	0	64	1.29
10664649--10664674	13	2.0	13	100	0	52	15	38	30	15	1.88
10674938--10675201	98	2.8	94	79	11	272	26	30	17	25	1.97
10674929--10675258	48	6.9	48	74	12	252	25	31	17	26	1.97
10677837--10677890	27	2.0	27	82	13	67	46	5	1	46	1.37
10683522--10683632	54	2.1	54	100	0	222	44	21	12	21	1.85
10687168--10687204	18	2.1	18	94	0	65	54	13	0	32	1.40
10687428--10687537	34	3.1	34	66	16	89	39	12	4	43	1.63
10687424--10687566	71	2.0	71	97	0	268	39	11	3	44	1.58
10687452--10687577	34	3.6	35	69	15	107	37	8	2	51	1.46
10689258--10689287	16	1.9	15	93	6	51	16	6	0	76	0.99
10694388--10694492	23	4.6	22	74	10	95	24	19	18	38	1.93
10694379--10694492	46	2.5	45	79	12	117	24	20	18	36	1.94
10699961--10700068	26	4.2	26	95	0	198	36	25	6	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10705781--10705888	26	4.2	26	95	0	198	36	25	6	31	1.82
10710018--10710123	22	4.6	22	77	14	99	24	19	18	36	1.94
10710018--10710132	24	4.9	24	77	14	107	24	20	19	35	1.95
10715129--10715287	47	3.2	47	85	7	201	33	26	13	25	1.94
10719512--10719605	44	2.1	44	80	7	102	29	17	24	28	1.97
10721345--10721379	4	8.8	4	93	0	61	22	2	0	74	0.95
10721346--10721408	12	5.2	12	75	17	60	23	4	0	71	1.05
10722915--10722956	20	2.1	20	95	0	75	30	23	19	26	1.98
10727763--10727812	15	3.5	14	79	15	50	42	8	24	26	1.82
10731823--10731915	24	4.1	23	75	15	79	62	0	8	29	1.25
10731823--10731915	15	6.2	15	74	24	81	62	0	8	29	1.25
10731849--10731954	43	2.4	44	87	6	153	62	0	7	30	1.23
10734350--10734391	20	2.1	20	95	0	75	52	23	4	19	1.65
10737351--10737428	18	4.7	18	74	19	89	23	44	7	24	1.79
10737364--10737421	30	1.9	30	96	0	107	22	41	8	27	1.83
10740355--10740406	24	2.2	23	83	10	61	36	3	0	59	1.16
10740361--10740596	25	9.5	25	69	14	123	33	5	4	56	1.43
10740551--10740609	23	2.8	20	72	16	57	32	6	5	55	1.48
10744600--10744647	15	3.1	15	78	21	62	33	0	2	64	1.05
10748321--10748470	50	3.0	50	90	1	248	36	15	21	27	1.93
10748477--10748676	31	6.5	31	91	0	301	29	19	25	26	1.98
10748682--10748710	7	4.1	7	100	0	58	44	13	27	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748717--10748839	47	2.6	47	84	2	149	30	15	23	30	1.95
10759261--10759305	19	2.4	19	100	0	90	26	4	31	37	1.76
10770989--10771027	19	2.0	20	90	5	62	20	0	7	71	1.10
10771008--10771053	25	1.9	23	86	8	65	28	0	8	63	1.24
10771960--10772022	30	2.1	30	91	5	101	58	11	4	25	1.51
10788393--10788451	23	2.6	23	79	15	61	44	15	5	35	1.68
10793057--10793225	37	4.6	37	82	4	198	27	15	12	44	1.82
10814781--10814912	70	1.9	66	83	6	165	33	10	11	44	1.75
10817543--10817588	18	2.4	20	82	7	60	36	0	6	56	1.25
10822181--10822230	26	1.9	26	91	0	82	26	22	10	42	1.84
10828246--10828317	2	36.0	2	97	0	117	4	0	45	50	1.21
10830898--10830949	27	1.9	27	100	0	104	30	11	25	32	1.91
10832623--10832648	12	2.2	12	100	0	52	53	7	0	38	1.30
10833529--10833645	61	1.9	61	91	3	191	50	4	1	43	1.31
10834989--10835461	87	5.4	87	93	0	793	32	27	15	25	1.95
10835427--10835594	44	3.8	44	92	0	273	26	27	16	30	1.96
10836563--10836632	1	70.0	1	73	0	59	1	11	0	87	0.62
10836563--10836632	17	4.0	18	83	10	92	1	11	0	87	0.62
10836563--10836631	19	3.7	19	83	13	90	1	11	0	86	0.62
10836563--10836616	7	7.6	7	80	19	67	0	12	0	87	0.56
10843235--10843304	35	2.0	35	100	0	140	31	14	17	37	1.89
10843418--10843462	21	2.0	23	87	8	67	46	13	4	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10843454--10843558	17	5.8	19	89	10	175	36	14	11	38	1.82
10843454--10843558	36	2.9	36	95	4	185	36	14	11	38	1.82
10843746--10843855	43	2.6	43	94	1	186	23	20	17	38	1.93
10845178--10845224	19	2.4	20	82	7	60	48	34	4	12	1.61
10853102--10853173	21	3.6	20	81	5	76	1	19	31	47	1.58
10853100--10853169	18	3.7	18	75	14	61	1	20	32	45	1.60
10856713--10856746	3	11.3	3	93	0	59	0	32	32	35	1.58
10857278--10857309	6	5.3	6	100	0	64	0	15	34	50	1.45
10859544--10859664	59	2.1	59	100	0	242	45	11	14	28	1.79
10861258--10861306	24	2.0	24	84	8	62	22	8	12	57	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343