genome.fa.s10.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  117  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39381679--39381900	64	3.4	65	76	9	218	23	28	15	32	1.95
39381777--39381928	68	2.3	68	81	8	172	25	30	14	29	1.95
39384116--39384159	22	2.0	22	86	0	61	52	4	0	43	1.22
39392768--39392860	41	2.2	41	81	14	102	24	25	20	29	1.99
39396007--39396178	46	3.7	46	75	16	185	22	18	26	31	1.97
39410685--39410802	44	2.5	48	81	12	138	26	22	13	37	1.92
39412093--39412132	18	2.2	18	90	0	62	42	12	22	22	1.87
39412475--39412584	27	4.1	27	75	0	94	36	19	17	27	1.94
39412475--39412584	54	2.0	54	82	0	130	36	19	17	27	1.94
39420461--39420565	43	2.4	43	79	6	131	33	24	16	25	1.96
39425891--39426073	40	4.6	40	89	4	271	23	21	27	26	1.99
39425891--39426106	80	2.7	80	84	7	262	25	21	27	25	1.99
39432451--39432514	22	2.6	25	81	15	73	46	9	1	42	1.45
39435767--39435827	30	2.0	30	87	0	86	40	4	24	29	1.76
39442674--39442786	41	2.7	43	75	10	108	30	15	23	30	1.95
39444565--39444610	13	3.5	13	96	0	83	43	26	17	13	1.85
39445305--39445433	49	2.6	50	86	3	172	23	29	19	27	1.98
39453484--39453566	27	3.1	27	82	0	103	36	16	16	30	1.92
39453548--39453893	27	12.9	27	72	13	115	41	18	8	32	1.80
39453594--39453913	54	5.9	54	74	4	223	41	20	7	30	1.80
39453653--39453894	27	9.0	26	76	8	128	41	19	8	31	1.80
39455944--39456121	27	6.6	26	82	6	178	26	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39455944--39456121	54	3.3	54	81	8	200	26	15	28	28	1.96
39455945--39456100	82	1.9	81	85	6	217	26	16	28	28	1.97
39455941--39456121	82	2.2	81	81	4	213	27	16	28	28	1.97
39456026--39456132	27	3.9	27	85	1	70	26	14	28	29	1.95
39457471--39457584	41	2.8	41	89	0	165	21	26	28	23	1.99
39459515--39459699	79	2.3	81	83	7	227	24	22	27	24	2.00
39459516--39459699	40	4.6	40	82	9	207	25	22	27	24	2.00
39459568--39459732	79	2.1	79	83	6	201	26	21	27	24	1.99
39467451--39467545	39	2.4	40	80	3	113	23	24	28	24	2.00
39475268--39475449	40	4.5	40	82	7	226	25	23	26	24	2.00
39475268--39475449	80	2.3	81	87	4	253	25	23	26	24	2.00
39481994--39482292	47	6.4	47	87	5	392	27	30	8	34	1.85
39481996--39482292	89	3.2	91	85	5	373	27	29	8	34	1.86
39482145--39482290	49	3.0	49	91	2	233	28	31	8	32	1.86
39495041--39495102	27	2.3	27	83	5	81	29	20	16	33	1.94
39496001--39496072	35	2.1	35	94	0	126	56	12	4	26	1.54
39496370--39496403	18	1.9	18	88	5	52	52	11	11	23	1.70
39496391--39496478	25	3.6	25	87	3	133	43	14	21	20	1.88
39496713--39496774	22	2.8	22	80	9	81	35	25	20	17	1.95
39497289--39497396	27	4.0	27	87	0	144	25	22	18	33	1.97
39497289--39497405	54	2.2	54	85	0	162	27	20	17	35	1.95
39497388--39497599	27	7.9	27	71	6	133	29	8	23	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39497425--39497599	54	3.2	52	79	7	174	28	8	23	40	1.83
39500884--39501035	43	3.5	44	83	5	170	32	23	14	30	1.94
39501695--39501726	16	2.0	16	93	0	55	31	12	34	21	1.91
39506568--39506617	25	2.0	25	96	0	91	26	24	18	32	1.97
39508790--39508819	15	2.0	15	100	0	60	26	20	6	46	1.75
39511021--39511171	28	5.4	28	91	1	214	33	27	11	26	1.92
39521476--39521519	22	2.0	22	86	0	61	56	4	0	38	1.20
39525095--39525245	54	2.8	54	80	8	173	29	16	27	27	1.97
39525096--39525250	27	5.7	27	78	7	145	28	16	27	27	1.97
39533216--39533285	28	2.6	27	86	2	86	28	20	28	22	1.98
39533161--39533312	55	2.8	53	81	4	178	28	16	27	26	1.97
39533162--39533317	27	5.7	27	78	6	145	28	16	28	27	1.97
39534982--39535242	38	6.1	40	72	18	181	31	24	14	29	1.94
39534932--39535109	85	2.1	85	91	0	293	33	24	12	28	1.93
39535019--39535290	48	5.9	48	79	9	307	31	23	14	30	1.94
39534939--39535314	133	2.8	133	90	0	592	31	24	14	29	1.94
39535081--39535242	85	1.9	86	88	1	245	32	24	13	30	1.93
39538816--39538867	18	2.9	18	88	0	77	19	21	13	46	1.84
39545147--39545187	21	2.0	21	95	4	75	26	0	19	53	1.45
39545806--39545862	29	2.0	28	89	3	87	21	22	24	31	1.98
39547282--39547347	19	3.7	18	67	30	52	31	0	16	51	1.45
39548226--39548263	15	2.4	17	82	13	53	42	2	13	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39548402--39548545	43	3.4	42	73	16	129	26	20	25	27	1.99
39549637--39549694	29	2.0	29	96	0	107	39	0	22	37	1.54
39551755--39551845	29	3.2	29	84	3	105	27	29	16	26	1.97
39555013--39555222	43	4.9	43	73	11	126	32	25	16	25	1.96
39563077--39563301	40	5.7	40	82	6	233	25	28	21	25	1.99
39563233--39563310	40	1.9	41	82	10	97	26	28	20	24	1.99
39571008--39571232	40	5.7	40	82	6	233	25	28	21	25	1.99
39571164--39571241	40	1.9	41	82	10	97	26	28	20	24	1.99
39582026--39582259	40	5.9	39	88	4	310	23	29	23	24	1.99
39584052--39584183	54	2.5	54	91	1	212	28	24	20	26	1.99
39587756--39587979	40	5.6	40	86	3	288	23	23	27	25	2.00
39587760--39587979	83	2.7	80	87	5	284	23	23	27	25	2.00
39587756--39587980	123	1.9	123	86	3	323	24	23	27	25	2.00
39606364--39606519	43	3.6	42	75	6	134	33	22	16	27	1.96
39611045--39611074	15	2.0	15	100	0	60	26	20	6	46	1.75
39613916--39614066	28	5.4	28	90	1	205	35	27	11	25	1.90
39627332--39627372	21	2.0	21	95	4	75	26	0	19	53	1.45
39631413--39631536	28	4.5	28	86	8	141	36	25	12	25	1.91
39642100--39642248	28	5.4	28	87	4	205	34	28	11	26	1.91
39642100--39642223	54	2.3	53	91	4	194	33	28	11	26	1.91
39645341--39645397	26	2.2	26	81	9	62	28	17	17	36	1.93
39649970--39650007	15	2.4	17	82	13	53	42	2	13	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39650146--39650253	43	2.5	43	79	11	123	28	22	25	23	1.99
39650879--39650992	54	2.1	54	93	0	201	29	7	21	41	1.80
39655405--39655444	13	3.0	13	80	20	55	32	2	12	52	1.52
39661928--39662015	6	14.3	6	68	17	56	46	12	19	21	1.82
39661936--39662015	31	2.6	31	83	0	97	46	11	20	22	1.82
39662130--39662189	28	2.2	27	82	8	77	36	21	21	20	1.95
39662778--39663243	27	17.3	27	82	0	493	26	18	18	36	1.93
39663282--39663703	27	15.6	27	81	2	371	30	9	21	38	1.85
39663279--39663703	81	5.2	81	83	1	474	30	9	21	38	1.85
39663346--39663703	27	13.3	27	85	0	473	31	9	20	39	1.84
39665649--39665736	6	14.3	6	71	17	65	47	13	18	20	1.82
39665658--39665736	31	2.5	31	87	0	113	48	12	18	20	1.81
39665851--39665932	28	3.0	26	78	15	85	35	21	23	19	1.96
39666496--39666960	27	17.3	27	82	2	497	26	18	18	35	1.94
39667010--39667074	27	2.4	27	76	0	76	32	10	18	38	1.85
39667063--39667393	27	12.3	27	84	3	416	32	9	18	39	1.83
39667080--39667393	54	5.8	54	89	1	459	32	8	18	40	1.82
39668762--39668934	41	4.2	41	88	2	258	50	6	20	22	1.70
39668770--39668923	83	1.9	83	93	2	265	48	5	21	24	1.72
39670020--39670057	19	2.1	18	90	5	58	28	15	0	55	1.41
39680041--39680177	38	3.6	38	93	0	229	19	19	25	35	1.96
39685256--39685463	45	4.6	45	92	1	346	28	27	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39686289--39686456	25	6.7	25	88	6	207	49	10	13	26	1.74
39690590--39690726	56	2.4	56	93	0	229	27	14	24	32	1.94
39697528--39697764	27	8.8	27	77	8	196	47	19	4	28	1.69
39697571--39697769	81	2.4	81	81	10	219	48	19	3	28	1.65
39698071--39698190	41	2.9	41	88	0	177	23	21	26	28	1.99
39699942--39699989	21	2.3	20	82	3	60	18	20	20	39	1.92
39702425--39702465	19	2.1	20	95	4	75	70	4	24	0	1.06
39704772--39704807	10	3.6	10	84	0	54	25	27	16	30	1.97
39704772--39704848	20	3.8	20	79	3	82	23	23	16	36	1.94
39709132--39709260	43	3.0	43	85	1	170	26	18	30	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343