genome.fa.s10.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  147  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48766404--48766620	40	5.5	40	90	3	316	22	23	27	26	1.99
48766404--48766620	79	2.7	80	89	4	316	22	23	27	26	1.99
48766404--48766620	119	1.8	119	86	7	316	22	23	27	26	1.99
48769745--48769787	15	2.9	15	92	0	77	30	25	6	37	1.82
48776205--48776256	16	3.2	16	94	0	86	28	0	36	34	1.58
48776507--48776541	18	2.0	17	88	5	52	54	0	0	45	0.99
48776641--48776682	15	2.7	16	82	14	52	52	2	0	45	1.13
48776394--48776691	154	1.9	156	95	2	546	44	3	5	47	1.41
48776650--48776784	15	8.9	15	67	24	70	51	3	2	42	1.32
48776433--48776748	154	2.0	155	83	7	401	46	4	3	45	1.39
48776710--48776800	44	2.1	43	81	6	103	53	3	2	40	1.29
48776690--48776908	120	1.8	119	89	6	345	50	5	3	40	1.44
48776869--48776907	17	2.5	15	80	15	51	51	0	5	43	1.24
48776874--48776907	17	2.0	17	94	0	59	50	0	5	44	1.26
48776940--48777134	93	2.1	92	88	4	286	47	4	4	44	1.41
48778532--48778558	11	2.5	11	100	0	54	51	18	7	22	1.70
48790687--48790720	17	2.0	17	94	0	59	55	5	8	29	1.54
48806636--48806676	2	20.5	2	100	0	82	0	48	0	51	1.00
48810682--48810812	46	2.8	46	87	9	169	31	25	20	22	1.98
48813001--48813080	30	2.7	30	82	7	99	56	15	17	11	1.67
48813001--48813071	15	4.7	15	81	6	90	57	12	18	11	1.64
48813003--48813080	15	5.2	15	78	9	79	56	15	16	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48816013--48816138	46	2.7	46	88	2	173	31	26	18	23	1.97
48817442--48817534	29	3.2	29	93	3	161	32	26	12	27	1.93
48837389--48837440	26	2.0	26	100	0	104	19	19	30	30	1.96
48846244--48846303	30	2.0	30	90	0	93	40	5	25	30	1.77
48854775--48854996	80	2.8	80	82	2	268	26	23	25	24	2.00
48854775--48854996	40	5.6	40	80	3	241	26	23	25	24	2.00
48854775--48854996	120	1.9	120	80	5	270	26	23	25	24	2.00
48862187--48862409	40	5.6	40	80	2	223	27	23	25	23	2.00
48880563--48880734	46	3.7	46	72	10	152	30	29	19	20	1.97
48880572--48880833	93	2.8	93	85	0	362	30	27	19	22	1.98
48882927--48882991	6	10.3	6	76	14	51	75	3	4	16	1.10
48882935--48882963	13	2.1	14	93	6	51	79	6	0	13	0.93
48882911--48882993	25	3.2	25	75	13	69	71	4	6	18	1.25
48883280--48883309	12	2.4	13	94	5	53	53	0	43	3	1.17
48885703--48885992	40	7.3	41	84	5	269	26	27	22	24	2.00
48885775--48885992	120	1.8	120	85	2	312	27	27	21	23	1.99
48887378--48887402	13	1.9	13	100	0	50	0	24	0	76	0.80
48893963--48894186	40	5.7	40	89	2	310	28	28	21	22	1.99
48893938--48894186	40	6.3	40	86	3	285	27	27	21	22	1.99
48893963--48894186	79	2.8	78	86	4	306	28	28	21	22	1.99
48895575--48895628	27	2.0	27	82	3	65	12	16	0	70	1.17
48903678--48903776	40	2.5	40	96	0	180	24	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48907442--48907592	28	5.4	28	92	1	223	33	28	11	25	1.92
48915121--48915298	40	4.5	40	88	2	252	25	21	27	25	2.00
48925361--48925455	43	2.2	43	81	3	111	35	25	11	27	1.90
48933789--48933847	20	3.0	20	72	16	52	76	5	6	11	1.14
48941763--48941984	118	1.9	119	84	6	299	25	27	22	24	2.00
48941761--48941984	40	5.7	40	85	7	287	25	27	22	24	2.00
48946860--48946919	27	2.3	27	85	2	77	21	23	20	35	1.96
48956280--48956337	30	1.9	30	82	6	73	18	27	31	22	1.97
48964327--48964356	16	1.9	15	93	6	51	33	23	0	43	1.54
48964561--48964735	51	3.5	49	77	4	181	30	26	17	25	1.97
48964542--48964691	49	3.0	50	78	2	167	30	25	19	24	1.98
48964542--48964740	100	2.0	100	89	2	301	30	25	18	25	1.98
48964561--48964745	49	3.7	50	77	5	187	30	26	17	25	1.97
48964559--48964789	101	2.3	100	82	2	275	32	25	16	25	1.96
48967744--48967809	15	4.3	15	76	1	69	57	12	16	13	1.65
48971693--48971900	56	3.7	56	85	2	249	22	17	29	30	1.97
48975172--48975460	50	5.7	50	78	2	256	31	25	15	26	1.96
48975172--48975416	101	2.5	100	84	2	296	29	26	17	26	1.97
48976193--48976285	33	2.8	33	81	0	96	27	16	25	30	1.96
48982012--48982092	26	3.2	24	75	11	65	24	18	17	39	1.92
48986645--48986916	39	7.0	39	92	0	436	23	29	25	22	1.99
48989939--48990041	52	2.0	52	94	0	179	33	12	15	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48993893--48993944	27	2.0	26	84	3	68	17	26	21	34	1.95
48996936--48997308	105	3.6	105	93	1	606	18	20	30	30	1.96
48997224--48997276	27	2.0	26	92	3	88	13	22	33	30	1.92
49000318--49000368	26	2.0	26	88	0	75	21	27	19	31	1.97
49009358--49009580	48	4.6	47	77	5	205	26	20	30	23	1.98
49010350--49010379	15	2.0	15	100	0	60	20	0	20	60	1.37
49013023--49013115	39	2.3	40	87	3	134	20	18	29	32	1.96
49013121--49013213	28	3.4	28	77	12	111	27	10	30	31	1.91
49013102--49013208	56	1.9	55	92	1	178	27	12	30	29	1.92
49026481--49026641	45	3.6	45	85	4	204	27	26	21	23	1.99
49030395--49030516	27	4.6	27	70	2	93	36	18	18	25	1.94
49040465--49040498	16	2.2	16	89	5	52	55	14	0	29	1.40
49051845--49052118	49	5.7	48	75	5	182	29	18	26	24	1.98
49051854--49052075	98	2.3	94	81	8	243	30	18	26	24	1.98
49055893--49056019	42	3.0	41	76	15	123	31	29	16	22	1.96
49056622--49056681	30	2.0	30	100	0	120	33	16	23	26	1.96
49067710--49067810	28	3.5	27	71	17	78	25	27	21	24	1.99
49067839--49067884	20	2.3	20	81	3	58	30	28	15	26	1.96
49067839--49067894	19	2.9	19	81	2	58	35	25	14	25	1.93
49072421--49072475	20	2.8	20	80	2	58	36	23	16	23	1.94
49075718--49075751	16	2.1	17	94	5	61	32	0	0	67	0.91
49082412--49082555	39	3.7	39	92	0	234	24	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49089227--49089275	23	2.1	23	85	7	64	20	6	2	71	1.18
49091876--49091960	39	2.2	39	80	6	91	30	29	20	20	1.97
49092034--49092154	47	2.6	46	80	6	138	27	30	10	31	1.90
49095838--49096195	40	8.9	40	93	1	592	30	29	19	19	1.97
49098508--49098592	40	2.2	39	82	2	98	30	30	20	18	1.96
49098666--49098786	47	2.6	46	80	6	138	27	30	10	31	1.90
49102485--49102802	40	7.9	40	94	0	546	27	29	22	20	1.98
49106053--49106218	89	1.9	90	92	3	282	28	28	22	21	1.99
49106045--49106216	45	3.9	43	80	11	204	29	27	21	21	1.99
49108570--49108631	15	4.2	15	77	4	72	56	16	16	11	1.67
49108559--49108627	29	2.4	29	85	0	93	57	17	15	8	1.62
49111547--49111718	93	1.8	93	94	0	308	27	30	21	20	1.98
49111539--49111714	46	3.8	46	81	10	214	28	29	21	21	1.98
49113161--49113281	47	2.6	46	80	6	138	27	30	10	31	1.90
49116537--49116695	39	4.1	39	81	10	175	22	20	28	27	1.99
49116537--49116695	78	2.1	77	86	5	223	22	20	28	27	1.99
49124717--49124858	40	3.6	40	83	6	173	26	22	26	23	2.00
49143009--49143039	16	1.9	16	93	0	53	25	9	22	41	1.84
49147528--49147586	29	2.0	28	83	6	73	72	0	20	6	1.06
49159464--49159488	13	1.9	13	100	0	50	40	24	4	32	1.73
49193273--49193331	29	2.0	28	83	6	73	72	0	20	6	1.06
49205152--49205542	47	8.3	47	92	1	599	26	30	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49205173--49205541	141	2.6	141	96	1	661	26	30	10	32	1.90
49206937--49207056	56	2.1	56	98	0	231	22	23	9	45	1.81
49209262--49209286	13	1.9	13	100	0	50	40	24	4	32	1.73
49215993--49216095	43	2.4	42	79	9	111	33	24	16	26	1.96
49215981--49216095	43	2.7	43	78	8	110	32	24	16	26	1.96
49221354--49221531	48	3.7	47	81	3	212	26	19	28	25	1.99
49221350--49221582	96	2.4	98	86	3	310	29	19	26	24	1.99
49221349--49221582	48	4.9	47	79	7	204	29	19	26	24	1.98
49223005--49223042	19	2.0	19	100	0	76	31	21	15	31	1.94
49224474--49224568	43	2.2	43	81	5	113	34	24	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343