Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  13  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4553822--4553854
10
3.4
10
83
8
50
51
0
3
45
1.16
4554048--4554117
23
3.0
23
82
2
86
44
18
8
28
1.79
4554306--4554347
18
2.3
19
88
12
61
33
0
0
66
0.92
4554870--4554923
27
2.0
28
85
10
76
37
3
7
51
1.48
4555933--4555971
20
2.0
20
100
0
78
28
0
5
66
1.12
4557962--4558015
20
2.7
20
85
0
72
11
35
35
18
1.86
4566328--4566601
138
2.0
138
92
0
458
33
20
18
28
1.96
4566358--4566636
138
2.0
137
81
5
323
36
19
19
24
1.95
4578364--4578450
44
2.0
44
100
0
174
34
16
16
33
1.91
4586153--4586190
18
2.1
18
85
9
51
18
36
5
39
1.73
4586653--4586710
29
2.0
29
100
0
116
44
17
20
17
1.86
4588391--4588418
6
4.7
6
100
0
56
85
0
14
0
0.59
4607986--4608043
25
2.4
23
77
8
62
44
1
5
48
1.35
4609970--4610023
28
1.9
28
96
0
99
29
11
20
38
1.87
4620207--4620367
51
3.1
51
82
9
182
29
16
12
41
1.85
4620207--4620375
54
3.2
53
82
9
193
28
17
12
41
1.85
4637453--4637508
23
2.5
23
82
8
62
35
5
3
55
1.40
4637746--4637786
22
1.9
21
85
14
57
58
12
2
26
1.46
4637830--4637868
16
2.5
15
84
12
51
48
0
0
51
1.00
4638743--4638788
23
2.0
24
91
4
76
52
19
0
28
1.47
4640434--4640475
22
1.9
22
85
0
57
52
0
0
47
1.00
4640499--4640535
16
2.3
16
86
13
58
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4641083--4641123
14
3.0
13
85
7
55
34
17
9
39
1.82
4642287--4642319
6
5.3
6
92
7
57
15
0
0
84
0.61
4649776--4649846
35
2.0
35
81
5
81
50
0
4
45
1.21
4655483--4655590
54
2.0
54
90
3
173
16
12
52
18
1.74
4656022--4656402
195
2.0
195
97
0
717
19
22
27
30
1.98
4661183--4661230
19
2.6
19
83
3
62
41
2
10
45
1.50
4661254--4661337
42
2.0
42
95
0
150
29
8
14
47
1.73
4663641--4663750
54
2.0
54
98
0
211
40
2
12
43
1.57
4663657--4663750
19
5.2
18
71
13
77
40
3
13
42
1.61
4663711--4663758
19
2.6
19
83
3
62
37
2
14
45
1.57
4666568--4666598
14
2.2
14
100
0
62
32
19
25
22
1.97
4673799--4673824
11
2.4
11
100
0
52
50
0
19
30
1.48
4677419--4677553
52
2.6
51
84
5
162
28
16
24
31
1.96
4684987--4685090
53
2.0
52
83
9
131
24
13
27
34
1.93
4685994--4686027
16
2.1
17
94
5
61
23
35
35
5
1.79
4689232--4689278
22
2.1
22
81
14
53
42
8
0
48
1.33
4689350--4689389
20
2.1
19
86
9
55
32
5
2
60
1.32
4689355--4689392
19
2.0
20
89
5
60
36
5
2
55
1.37
4689498--4689526
3
9.7
3
100
0
58
68
0
0
31
0.89
4689718--4689786
28
2.4
28
85
2
84
43
5
0
50
1.26
4689843--4689911
36
1.9
36
100
0
138
31
10
8
49
1.67
4697232--4697501
73
3.5
73
87
10
423
28
5
25
40
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4697325--4697487
84
1.9
84
98
0
317
27
4
26
41
1.76
4701732--4701917
73
2.5
73
99
0
363
27
6
24
40
1.80
4704639--4704703
28
2.2
31
81
8
82
47
6
13
32
1.68
4705626--4705680
18
3.1
17
84
10
58
49
1
1
47
1.23
4705742--4705770
13
2.1
14
93
6
51
55
3
6
34
1.44
4705742--4705774
13
2.5
13
90
9
50
54
3
6
36
1.41
4712800--4712871
36
2.0
35
97
2
135
29
5
5
59
1.43
4718288--4718345
8
7.2
8
71
21
50
68
1
0
29
0.99
4718280--4718345
25
2.8
24
80
15
82
66
1
0
31
1.01
4718287--4718342
15
3.5
15
74
25
53
67
1
0
30
1.01
4718288--4718448
9
17.7
9
69
19
86
63
2
1
32
1.18
4718987--4719049
9
6.6
10
72
20
55
33
0
3
63
1.10
4718965--4719030
17
3.8
17
76
21
57
34
1
0
63
1.04
4718994--4719047
27
2.0
27
89
7
83
35
0
3
61
1.14
4730896--4730942
17
2.7
17
80
3
58
68
0
25
6
1.13
4737345--4737392
24
2.0
24
84
8
62
31
6
4
58
1.42
4739827--4739924
42
2.3
42
84
3
126
16
20
18
44
1.86
4739852--4739923
21
3.4
21
62
7
56
16
22
16
44
1.86
4743570--4743624
24
2.2
25
83
3
67
21
16
18
43
1.88
4745598--4745640
16
2.7
15
83
16
52
30
6
0
62
1.21
4745629--4745714
10
8.9
9
70
20
50
31
6
2
59
1.37
4746813--4746851
21
2.0
20
85
14
55
30
0
23
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4750331--4750379
26
2.0
26
88
8
75
30
0
6
63
1.19
4754203--4754254
24
2.2
24
89
0
77
55
9
1
32
1.43
4756171--4756222
24
2.2
24
89
0
77
55
9
1
32
1.43
4764024--4764068
13
3.7
12
88
11
65
62
4
0
33
1.15
4764962--4765088
61
2.1
61
88
4
186
46
5
9
38
1.60
4766573--4766619
21
2.2
21
80
0
58
36
14
0
48
1.44
4768112--4768170
31
1.9
31
82
6
75
40
10
8
40
1.69
4769163--4769281
58
2.1
58
98
0
229
31
19
10
37
1.86
4769802--4769905
52
2.0
51
90
1
163
33
18
12
35
1.88
4772054--4772216
66
2.5
67
75
3
168
31
17
17
34
1.93
4775760--4775805
21
2.2
21
88
0
65
4
15
4
76
1.11
4778148--4778209
22
2.8
22
82
4
72
46
1
3
48
1.28
4781250--4781304
25
2.3
23
78
12
58
43
3
18
34
1.67
4781607--4781659
24
2.2
24
79
0
61
47
5
7
39
1.56
4781710--4781751
2
22.0
2
83
9
52
54
2
0
42
1.13
4781819--4781855
19
1.9
19
94
0
65
51
2
13
32
1.55
4781937--4782011
30
2.5
30
81
10
82
56
6
2
34
1.40
4782040--4782100
12
5.2
12
75
11
54
59
6
1
32
1.33
4783994--4784107
19
5.8
19
70
15
63
40
0
2
56
1.19
4783993--4784070
41
1.9
41
84
5
104
38
0
2
58
1.12
4785488--4785550
26
2.3
26
86
10
83
63
7
3
25
1.37
4788071--4788103
12
2.8
12
90
0
57
24
18
0
57
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4789382--4789411
11
2.7
11
94
0
51
36
0
0
63
0.95
4793629--4793736
44
2.4
44
87
3
144
29
23
13
33
1.93
4804851--4804881
16
1.9
16
93
0
53
54
3
6
35
1.42
4810241--4810270
2
15.0
2
100
0
60
50
0
0
50
1.00
4810254--4810320
28
2.3
29
82
10
84
37
4
4
53
1.41
4811319--4811651
131
2.6
127
83
2
414
26
17
18
37
1.93
4816008--4816039
14
2.3
14
94
0
55
43
0
3
53
1.16
4825891--4825935
17
2.6
17
85
0
63
11
8
6
73
1.25
4825949--4826052
28
3.8
26
73
19
77
25
3
3
66
1.26
4826018--4826068
24
2.0
25
85
14
70
31
0
3
64
1.11
4828468--4828506
19
2.0
20
90
5
62
20
0
7
71
1.10
4828487--4828532
25
1.9
23
86
8
65
28
0
8
63
1.24
4835339--4835369
14
2.1
15
94
5
55
38
6
3
51
1.44
4835624--4835785
80
2.0
80
100
0
324
29
24
7
38
1.82
4838783--4838831
25
2.0
25
91
0
80
38
18
4
38
1.70
4838783--4838833
12
4.1
13
76
16
54
37
17
3
41
1.68
4845202--4845244
13
3.0
15
83
13
63
20
27
2
48
1.62
4848436--4848472
3
12.3
3
88
0
56
32
62
0
5
1.18
4850686--4850720
18
1.9
18
88
0
52
40
0
0
60
0.97
4856200--4856256
29
2.0
27
83
6
69
42
1
0
56
1.10
4856189--4856251
27
2.3
27
79
17
67
41
1
1
55
1.19
4866864--4866911
9
5.6
8
86
13
53
56
0
4
39
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4866864--4866911
17
2.8
17
82
17
55
56
0
4
39
1.19
4871116--4871353
120
2.0
122
90
1
381
55
5
8
30
1.53
4878194--4878241
22
2.2
21
79
13
53
31
6
0
62
1.20
4879670--4879695
2
13.0
2
100
0
52
50
0
0
50
1.00
4881759--4881827
35
2.0
35
100
0
138
34
15
11
37
1.84
4888761--4888793
13
2.6
13
85
4
50
30
0
6
63
1.18
4890649--4890876
46
5.0
46
89
1
314
40
14
24
20
1.90
4891157--4891189
17
2.0
17
88
5
50
48
3
15
33
1.60
4892664--4892792
46
2.8
46
95
0
222
29
27
21
20
1.98
4895771--4895795
3
8.3
3
100
0
50
68
0
0
32
0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343