Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  316  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102226872--102226941
3
24.0
3
74
11
65
0
34
0
65
0.93
102226874--102226942
22
3.4
22
82
9
85
0
33
0
66
0.92
102227111--102227145
19
1.9
18
88
11
54
5
8
5
80
1.03
102229053--102229080
13
2.2
13
100
0
56
28
0
7
64
1.20
102235905--102236135
118
2.0
118
92
0
381
28
31
17
22
1.97
102246180--102246226
22
2.1
22
92
0
76
53
10
36
0
1.36
102247988--102248049
30
2.0
31
81
9
74
29
6
4
59
1.43
102250825--102250872
23
2.1
23
100
0
96
39
14
0
45
1.45
102252589--102252616
13
2.2
13
100
0
56
28
0
7
64
1.20
102252692--102252719
13
2.2
13
100
0
56
28
0
7
64
1.20
102253897--102253930
15
2.2
16
89
5
52
67
0
11
20
1.21
102259469--102259520
24
2.2
24
100
0
104
19
36
3
40
1.70
102262182--102262211
15
2.0
15
93
0
51
10
13
3
73
1.21
102268453--102268507
29
1.9
29
85
10
78
29
1
30
38
1.68
102269003--102269069
29
2.3
29
84
5
82
28
2
34
34
1.73
102271637--102271671
19
1.9
17
88
11
52
77
8
0
14
0.99
102271878--102271937
26
2.3
25
83
11
68
63
5
1
30
1.25
102273276--102273321
20
2.3
20
84
0
56
41
21
28
8
1.83
102275444--102275469
13
2.0
13
100
0
52
38
30
0
30
1.58
102279152--102279203
26
2.0
26
85
7
70
26
7
1
63
1.32
102279319--102279344
13
2.0
13
100
0
52
38
23
7
30
1.83
102288744--102288775
16
2.0
16
100
0
64
18
31
6
43
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102294896--102295414
73
7.1
73
90
3
767
28
17
22
31
1.97
102295403--102295436
16
2.1
16
94
0
59
20
8
0
70
1.13
102295403--102295439
14
2.4
16
86
8
51
24
10
0
64
1.25
102295492--102295526
18
1.9
18
94
0
61
20
8
0
71
1.11
102295349--102295565
89
2.4
89
87
5
321
29
15
15
39
1.88
102296393--102296491
30
3.3
30
94
0
180
26
50
6
17
1.69
102299072--102299124
15
3.5
15
78
12
56
35
0
1
62
1.06
102301809--102301904
48
2.0
48
100
0
192
33
8
14
43
1.75
102304197--102304510
46
6.8
46
91
0
423
40
14
23
21
1.90
102311075--102311111
18
2.1
18
89
0
56
51
24
2
21
1.61
102316002--102316098
49
2.0
49
95
0
176
45
10
16
27
1.80
102316801--102316836
16
2.2
17
90
5
56
36
19
8
36
1.82
102320717--102320746
14
2.1
14
93
0
51
0
16
3
80
0.85
102325632--102325677
19
2.5
20
86
13
64
45
0
0
54
0.99
102325639--102325694
21
2.6
22
83
13
73
48
0
0
51
1.00
102325639--102325689
10
4.8
11
79
18
54
45
0
0
54
0.99
102325673--102325703
13
2.3
14
94
5
55
45
0
0
54
0.99
102327403--102327448
23
2.0
23
87
8
67
30
2
0
67
1.03
102327412--102327456
23
2.0
22
82
4
54
37
0
2
60
1.09
102328537--102328573
17
2.2
17
90
0
56
64
0
0
35
0.94
102331724--102331750
2
13.5
2
100
0
54
0
48
0
51
1.00
102340073--102340128
27
2.0
27
86
3
76
64
1
1
32
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102346007--102346061
26
2.1
26
86
6
76
43
20
5
30
1.74
102346015--102346070
26
2.1
26
90
6
85
37
21
5
35
1.76
102349368--102349396
14
2.1
14
100
0
58
0
13
41
44
1.44
102355885--102355953
34
2.0
34
94
0
120
26
15
20
37
1.93
102361986--102362035
25
2.0
25
100
0
100
20
20
12
48
1.80
102370151--102370190
3
13.3
3
100
0
80
67
0
32
0
0.91
102370157--102370203
12
3.9
12
91
5
53
65
0
34
0
0.93
102371283--102371333
21
2.4
21
75
18
52
9
9
39
41
1.71
102372073--102372251
89
2.0
89
86
0
250
40
16
14
28
1.88
102372369--102372444
6
12.7
6
81
5
91
61
13
6
18
1.52
102372870--102372909
21
1.9
21
94
0
71
25
30
20
25
1.99
102372952--102373012
31
2.0
31
84
9
81
22
11
18
47
1.80
102380638--102380669
12
2.7
12
95
0
55
28
31
12
28
1.93
102389246--102389279
17
2.0
17
88
0
50
76
8
2
11
1.12
102389707--102389752
24
1.9
24
90
0
74
52
6
4
36
1.47
102406323--102406356
17
2.0
17
88
0
50
76
8
2
11
1.12
102406788--102406833
24
1.9
24
82
8
58
54
6
4
34
1.46
102413478--102413518
12
3.4
12
86
0
64
51
0
2
46
1.14
102413478--102413527
6
8.3
6
75
16
50
48
0
4
48
1.20
102413478--102413527
24
2.1
24
100
0
100
48
0
4
48
1.20
102413485--102413527
12
3.6
12
87
0
68
46
0
4
48
1.22
102416833--102416862
11
2.9
10
90
9
51
86
0
3
10
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102421621--102421675
27
2.1
26
83
10
67
12
16
0
70
1.16
102424568--102424640
31
2.4
31
83
0
92
34
8
9
47
1.66
102424581--102424643
31
2.0
31
90
0
99
31
7
12
47
1.70
102425641--102425686
20
2.3
20
100
0
92
39
4
8
47
1.54
102429073--102429134
23
2.5
24
82
7
63
50
3
0
46
1.17
102429082--102429132
24
2.1
24
82
7
59
50
3
0
45
1.20
102431019--102431180
31
5.2
31
84
0
162
33
13
10
41
1.79
102432306--102432550
121
2.0
121
95
0
445
30
22
19
27
1.98
102435413--102435452
18
2.3
18
86
4
55
75
0
0
25
0.81
102435432--102435505
31
2.4
31
78
14
82
63
0
2
33
1.09
102435574--102435628
19
2.8
20
77
5
58
65
1
5
27
1.25
102441060--102441103
23
1.9
23
86
9
63
27
15
4
52
1.63
102445791--102445820
12
2.5
12
88
0
51
6
0
43
50
1.28
102448095--102448165
22
3.6
20
71
27
62
66
2
1
29
1.15
102448087--102448138
23
2.2
24
86
10
72
67
3
0
28
1.08
102458641--102458763
63
2.0
63
96
0
228
32
21
13
32
1.92
102465175--102465220
20
2.3
20
79
17
60
26
15
28
30
1.96
102467612--102467681
29
2.4
29
88
9
115
17
25
34
22
1.96
102476697--102476769
36
2.0
36
100
0
146
50
13
10
24
1.74
102487978--102488035
30
1.9
30
86
6
82
18
25
31
24
1.98
102489801--102489849
25
2.0
25
84
8
64
32
6
4
57
1.42
102504109--102504216
26
4.2
26
95
0
180
33
7
23
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102505397--102505426
8
3.8
8
90
0
51
43
26
26
3
1.70
102505816--102505983
27
6.2
27
85
8
200
19
23
22
35
1.96
102505814--102505961
54
2.7
54
93
2
244
16
25
22
35
1.94
102505816--102505983
81
2.1
81
86
4
232
19
23
22
35
1.96
102505816--102505983
54
3.1
54
90
3
241
19
23
22
35
1.96
102507929--102507977
24
1.9
27
88
12
77
73
2
10
14
1.18
102509171--102509840
44
14.6
44
67
13
199
28
21
17
32
1.96
102509686--102509920
94
2.5
93
84
2
308
29
21
17
30
1.97
102509734--102509902
50
3.5
49
74
14
163
31
22
17
27
1.97
102509984--102510072
46
1.9
45
84
8
117
28
25
14
31
1.95
102514627--102514655
12
2.3
13
94
5
51
79
3
0
17
0.87
102517958--102518024
29
2.3
29
80
17
77
49
4
0
46
1.22
102518276--102518310
17
2.0
18
88
5
54
25
0
5
68
1.11
102518666--102518761
48
2.0
48
95
0
174
20
20
16
41
1.90
102523372--102523412
21
1.9
22
85
14
59
12
4
12
70
1.31
102524361--102524397
20
1.9
18
89
10
56
43
0
21
35
1.53
102524954--102525129
46
3.8
46
76
10
187
21
19
28
30
1.98
102524951--102525121
93
1.8
93
89
0
270
21
20
28
29
1.98
102530324--102530384
20
3.2
20
79
9
65
50
3
0
45
1.17
102530871--102530955
34
2.5
35
72
14
88
34
0
5
60
1.21
102537173--102537206
17
2.0
17
94
0
59
82
0
2
14
0.79
102538711--102538771
24
2.7
21
72
20
52
63
4
1
29
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102539799--102540234
94
4.7
92
76
6
333
30
12
16
41
1.85
102540656--102540901
137
1.8
131
81
8
298
33
17
15
33
1.91
102550011--102550050
18
2.2
18
86
0
53
77
10
10
2
1.08
102551360--102551399
20
2.0
20
100
0
80
40
10
20
30
1.85
102553644--102553755
33
3.4
33
80
1
118
27
23
16
32
1.96
102553769--102553885
33
3.5
33
94
0
189
25
20
14
39
1.91
102554520--102554560
20
2.0
22
85
9
59
29
24
0
46
1.53
102554587--102554652
31
2.1
31
100
0
132
27
15
3
54
1.55
102554953--102554991
16
2.4
16
88
12
62
33
12
0
53
1.39
102555049--102555074
13
2.0
13
100
0
52
46
7
7
38
1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343