Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  272  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90335592--90335765
89
2.0
87
89
2
267
25
29
22
22
1.99
90338787--90338828
21
2.0
21
100
0
84
19
19
19
42
1.89
90339393--90339445
27
2.0
27
92
0
88
37
18
7
35
1.80
90340667--90340700
8
4.2
8
85
14
52
11
0
0
88
0.52
90340667--90340700
15
2.2
16
94
5
61
11
0
0
88
0.52
90345029--90345056
9
3.1
9
100
0
56
10
0
0
89
0.49
90348299--90348353
24
2.3
24
90
0
83
41
16
21
20
1.90
90348456--90348515
26
2.3
26
82
0
75
38
21
21
18
1.94
90350016--90350056
16
2.5
17
88
4
57
24
31
24
19
1.98
90352854--90352883
15
1.9
16
93
6
53
53
0
0
46
1.00
90354703--90354735
16
2.1
16
88
11
50
45
3
6
45
1.43
90355072--90355151
22
3.6
22
79
5
72
23
33
0
42
1.55
90355490--90355557
34
2.0
34
100
0
136
20
17
35
26
1.95
90361762--90362030
105
2.6
105
92
2
443
29
30
20
18
1.97
90362357--90362420
30
2.2
29
81
10
76
29
28
6
35
1.82
90362364--90362420
30
1.9
30
85
3
80
29
24
7
38
1.82
90369380--90369430
26
2.0
26
96
0
93
29
35
23
11
1.90
90369243--90369509
104
2.6
104
92
2
439
29
30
20
18
1.97
90369835--90369898
30
2.2
29
81
10
76
29
28
6
35
1.82
90369842--90369898
30
1.9
30
85
3
80
29
24
7
38
1.82
90393709--90393951
54
4.5
54
96
0
432
27
25
20
26
1.99
90397319--90397357
20
2.0
20
89
0
60
17
28
17
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90397322--90397357
10
3.6
10
84
0
54
19
25
19
36
1.95
90397322--90397365
20
2.2
20
83
0
52
22
25
18
34
1.96
90403368--90403427
30
2.0
30
96
0
111
28
13
21
36
1.91
90413158--90413291
54
2.5
54
90
0
205
30
24
17
27
1.97
90418340--90418381
12
3.7
12
78
12
52
66
0
0
33
0.92
90418339--90418396
22
2.5
22
80
5
62
67
0
0
32
0.91
90420387--90420429
20
2.2
20
91
0
68
51
11
11
25
1.72
90421340--90421496
75
2.1
75
84
9
205
35
0
10
54
1.39
90422439--90422522
36
2.3
36
83
4
96
23
13
22
40
1.89
90422804--90422828
7
3.6
7
100
0
50
24
28
0
48
1.52
90424081--90424187
40
2.7
40
91
0
169
46
22
8
22
1.78
90425761--90425806
15
3.1
15
83
0
56
36
30
6
26
1.82
90426311--90426386
6
12.7
6
84
5
64
50
17
10
22
1.76
90426421--90426463
18
2.4
18
88
0
59
62
9
4
23
1.44
90426431--90426468
12
3.2
12
88
0
58
71
10
2
15
1.25
90426435--90426468
6
5.7
6
86
13
52
70
11
2
14
1.27
90426436--90426493
12
4.8
12
80
0
62
63
13
5
17
1.47
90426435--90426493
18
3.3
18
79
9
66
64
13
5
16
1.45
90434296--90434390
23
4.1
23
83
2
127
22
25
4
48
1.68
90436353--90436494
71
2.0
71
100
0
284
28
26
15
29
1.96
90438869--90438962
23
4.1
23
80
0
116
23
26
4
45
1.71
90448848--90448887
3
13.3
3
100
0
80
65
0
0
35
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90450038--90450093
27
2.1
27
100
0
112
25
14
25
35
1.93
90451356--90451389
16
2.1
16
88
0
50
23
11
20
44
1.84
90459917--90459943
12
2.2
12
100
0
54
59
14
0
25
1.36
90465316--90465372
28
2.0
28
100
0
114
38
3
7
50
1.46
90466833--90466910
33
2.4
32
79
10
86
38
15
19
26
1.91
90466808--90467026
101
2.2
101
85
0
285
32
14
24
28
1.94
90467292--90467324
17
2.0
17
88
5
50
48
0
18
33
1.48
90471605--90471651
17
2.8
17
80
6
51
44
0
6
48
1.28
90471983--90472018
13
2.8
14
84
16
51
55
0
0
44
0.99
90474446--90474474
14
2.0
15
93
6
51
27
0
20
51
1.47
90475636--90475771
56
2.4
56
91
1
220
27
12
25
34
1.92
90480143--90480205
19
3.4
19
82
8
94
34
22
0
42
1.54
90480137--90480205
18
3.8
19
81
9
90
36
20
0
43
1.52
90480137--90480206
36
1.9
36
100
0
140
37
20
0
42
1.52
90481121--90481226
36
2.9
37
82
12
112
36
5
10
47
1.62
90491504--90491673
50
3.4
50
87
2
243
35
14
21
28
1.92
90491658--90491859
31
6.5
31
89
2
298
29
18
25
26
1.98
90495877--90495901
13
1.9
13
100
0
50
4
48
24
24
1.68
90501466--90501527
3
21.0
3
93
3
108
33
1
0
64
1.03
90502017--90502093
28
2.8
28
68
14
70
42
0
22
35
1.54
90503064--90503115
22
2.4
22
71
12
52
50
5
15
28
1.67
90509280--90509413
39
3.4
38
80
8
128
32
8
12
46
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90509286--90509444
39
4.1
38
80
8
119
32
9
11
46
1.73
90511986--90512015
7
4.3
7
100
0
60
26
0
30
43
1.55
90512962--90513004
22
1.9
23
90
4
70
27
0
11
60
1.31
90521066--90521099
16
2.1
16
88
0
50
8
17
2
70
1.25
90521938--90522213
55
4.9
55
82
7
304
50
15
9
25
1.73
90530093--90530122
16
1.9
15
93
6
51
83
3
0
13
0.77
90533222--90533253
12
2.6
13
90
9
50
50
25
6
18
1.70
90539801--90539832
12
2.6
13
90
9
50
50
25
6
18
1.70
90541653--90541778
66
1.9
66
80
3
146
48
17
18
15
1.82
90549278--90549379
20
5.1
19
71
12
69
55
0
0
43
1.06
90550624--90550656
6
5.3
6
92
7
57
15
18
0
66
1.25
90550747--90550776
8
3.8
8
90
0
51
16
33
0
50
1.46
90571303--90571327
3
8.3
3
100
0
50
0
36
32
32
1.58
90575570--90575618
18
2.7
18
76
17
57
75
6
6
12
1.17
90575579--90575617
17
2.3
18
82
8
55
76
5
7
10
1.13
90575909--90575940
2
16.0
2
100
0
64
50
0
0
50
1.00
90576449--90576484
8
4.6
8
86
6
56
52
11
0
36
1.37
90576581--90576620
22
1.9
20
85
10
53
40
2
0
57
1.12
90576603--90576654
23
2.1
26
86
10
74
40
0
1
57
1.10
90576602--90576655
25
2.3
22
81
15
63
42
0
1
55
1.10
90581669--90581739
36
2.0
36
97
0
133
50
16
12
19
1.77
90583959--90583983
6
4.2
6
100
0
50
84
0
0
16
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90584998--90585022
5
5.0
5
100
0
50
20
0
0
80
0.72
90588274--90588350
27
2.8
28
74
16
72
55
3
1
38
1.26
90591438--90591493
28
2.0
28
82
0
67
28
8
3
58
1.45
90591522--90591583
29
2.1
29
85
5
81
35
8
0
56
1.29
90591545--90591588
17
2.6
17
82
10
54
34
2
0
63
1.07
90591927--90591967
21
2.0
21
90
0
64
21
2
2
73
1.07
90593808--90593841
17
1.9
18
88
5
52
38
2
0
58
1.13
90602851--90603208
46
8.0
46
86
5
464
38
14
23
23
1.92
90603469--90603515
25
2.0
25
83
8
62
53
4
14
27
1.60
90605001--90605155
43
3.6
42
80
5
152
27
17
23
31
1.97
90605052--90605155
42
2.5
42
79
7
120
27
18
24
29
1.98
90605888--90605946
30
2.0
30
96
0
109
30
3
25
40
1.72
90606817--90606850
11
3.1
11
91
0
50
55
0
29
14
1.40
90608297--90608330
16
2.1
16
88
0
50
17
8
8
64
1.47
90610207--90610262
24
2.2
26
81
12
64
55
10
1
32
1.45
90610540--90610578
14
2.7
15
88
11
55
35
0
5
58
1.20
90614921--90614997
39
2.0
39
94
0
136
35
27
16
20
1.95
90620738--90620897
80
2.0
80
97
0
302
38
20
23
17
1.93
90621231--90621284
19
2.8
18
78
10
63
42
5
11
40
1.64
90621231--90621291
20
3.1
19
75
13
61
42
4
9
42
1.59
90625438--90625483
23
2.0
23
95
0
83
36
17
19
26
1.94
90625580--90625613
12
2.7
13
86
9
52
38
20
5
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90628093--90628130
15
2.4
16
82
4
51
47
0
2
50
1.15
90633374--90633445
22
3.3
22
86
7
103
34
2
18
44
1.64
90639481--90639702
46
4.7
48
79
13
189
26
19
30
23
1.98
90647131--90647251
46
2.6
49
85
13
159
26
20
29
23
1.99
90653695--90653764
22
3.2
22
79
0
77
38
8
18
34
1.81
90656540--90656583
21
2.2
19
84
8
52
22
4
13
59
1.53
90656976--90657019
22
2.0
22
90
0
70
36
9
20
34
1.84
90659995--90660019
12
2.1
12
100
0
50
32
8
24
36
1.84
90664838--90664885
19
2.5
19
83
12
55
66
2
2
29
1.14
90664843--90664887
15
3.1
15
87
3
56
66
2
0
31
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343