Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  333  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106551171--106551207
19
1.9
19
88
0
56
43
0
2
54
1.14
106556147--106556208
29
2.2
29
80
8
76
25
6
12
54
1.62
106556312--106556373
23
2.7
24
85
7
83
66
0
1
32
1.02
106556312--106556374
22
2.7
23
87
4
83
65
0
1
33
1.03
106557074--106557124
25
2.0
25
84
0
66
29
19
9
41
1.84
106559120--106559156
15
2.5
15
91
8
58
35
18
18
27
1.95
106560325--106560361
17
2.1
18
95
5
67
81
0
2
16
0.81
106560331--106560355
12
2.1
12
100
0
50
84
0
0
16
0.63
106560854--106560897
22
2.0
22
90
0
70
11
20
25
43
1.85
106560969--106561131
43
3.8
43
89
0
236
29
31
16
22
1.96
106564524--106564560
14
2.6
14
91
0
56
35
40
0
24
1.55
106564516--106564592
21
3.7
21
75
3
66
37
40
0
22
1.54
106565659--106565850
41
4.7
40
89
4
251
32
27
21
18
1.97
106565888--106566022
40
3.4
38
77
8
117
21
20
20
37
1.94
106565907--106566023
40
2.9
40
79
3
121
24
21
18
35
1.96
106568531--106568604
21
3.4
21
92
3
121
33
28
24
13
1.93
106568535--106568617
44
1.9
42
87
4
121
33
26
24
15
1.95
106568988--106569045
15
3.8
15
88
2
89
51
12
0
36
1.39
106569367--106569408
5
8.2
5
97
2
75
57
0
0
42
0.99
106569431--106569459
8
3.6
8
100
0
58
62
0
0
37
0.96
106569368--106569460
10
10.7
9
77
13
65
56
2
0
40
1.11
106572281--106572317
17
2.1
18
95
5
67
81
0
2
16
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106572287--106572311
12
2.1
12
100
0
50
84
0
0
16
0.63
106582534--106582575
11
3.9
11
84
3
50
30
2
47
19
1.62
106586640--106586677
18
2.1
18
90
0
58
31
13
23
31
1.93
106587209--106587262
11
5.0
11
86
4
74
29
5
46
18
1.72
106594776--106594836
29
2.1
30
81
9
72
27
14
6
50
1.68
106595655--106595706
26
2.0
25
85
10
70
1
28
0
69
0.99
106595648--106595711
30
2.1
31
83
11
80
1
28
0
70
0.97
106601281--106601315
12
2.8
13
91
8
56
34
0
0
65
0.93
106601316--106601362
18
2.6
18
77
16
51
65
12
0
21
1.25
106601439--106601496
30
1.9
30
86
6
82
56
12
3
27
1.51
106603262--106603317
28
2.0
28
96
0
103
19
7
19
53
1.68
106604184--106604224
21
2.0
20
95
4
73
29
26
19
24
1.98
106605590--106605754
43
3.8
43
75
6
163
31
23
14
30
1.94
106610947--106611002
27
2.0
29
82
6
71
51
3
0
44
1.18
106611348--106611431
26
3.2
26
96
0
150
33
4
25
36
1.77
106613051--106613190
27
5.2
27
86
2
174
17
23
22
35
1.95
106613051--106613190
54
2.6
55
87
2
194
17
23
22
35
1.95
106618158--106618399
121
2.0
121
90
0
376
40
10
7
41
1.68
106619666--106619864
87
2.3
87
85
0
263
34
15
21
28
1.94
106621014--106621124
29
3.8
29
70
5
80
25
18
18
36
1.94
106625819--106625910
31
2.9
32
74
8
98
28
16
11
43
1.83
106626592--106626645
17
2.9
18
81
13
56
55
3
5
35
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106630840--106630884
22
2.0
22
91
0
72
42
20
13
24
1.87
106630992--106631049
27
2.1
27
90
6
91
27
12
0
60
1.32
106650747--106650783
18
2.1
18
94
0
65
54
2
16
27
1.56
106655320--106655381
33
1.9
32
86
3
88
35
19
9
35
1.85
106666703--106666735
15
2.1
16
88
5
50
48
9
0
42
1.35
106667369--106667398
3
9.7
3
92
7
51
33
3
0
63
1.11
106669094--106669118
10
2.5
10
100
0
50
44
12
0
44
1.41
106681547--106681599
21
2.7
20
80
8
54
32
9
5
52
1.57
106682869--106683133
18
14.3
18
72
9
183
35
13
12
37
1.84
106682856--106683133
36
7.5
36
72
9
202
36
14
12
37
1.84
106683290--106683398
45
2.4
45
92
0
173
42
20
19
18
1.90
106683376--106683400
12
2.1
12
100
0
50
40
20
24
16
1.91
106684190--106684272
5
16.0
5
70
20
55
57
3
0
38
1.16
106684198--106684271
40
1.9
37
81
13
87
56
4
0
39
1.18
106687852--106687910
30
2.0
30
89
0
91
59
11
1
27
1.42
106690004--106690082
27
2.7
29
82
9
108
35
5
5
54
1.44
106698050--106698101
6
8.7
6
93
0
86
34
63
1
0
1.06
106699395--106699446
26
2.0
26
81
7
61
51
0
1
46
1.12
106701015--106701047
6
5.5
6
100
0
66
33
0
48
18
1.48
106701131--106701276
12
12.5
11
68
21
68
50
2
45
2
1.25
106701194--106701276
6
12.8
6
80
14
85
53
1
44
1
1.16
106701150--106701276
27
5.0
24
76
14
105
51
2
44
1
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106701150--106701294
45
3.0
48
75
13
136
51
2
45
1
1.21
106701186--106701277
33
2.8
33
83
3
114
53
1
44
1
1.15
106706712--106707267
184
3.0
180
89
3
801
29
14
24
30
1.95
106709689--106709764
36
2.1
36
87
0
107
10
21
32
35
1.87
106710633--106710712
35
2.3
35
80
10
92
22
10
1
66
1.29
106710902--106710941
18
2.2
18
95
0
71
45
10
10
35
1.71
106711834--106711862
13
2.1
14
93
6
51
65
0
0
34
0.93
106721804--106721850
21
2.2
21
88
7
69
25
25
19
29
1.98
106737746--106737809
31
2.1
31
100
0
128
34
9
29
26
1.88
106740500--106740581
40
2.0
40
100
0
164
45
2
7
45
1.44
106740507--106740571
20
3.2
20
67
16
62
46
1
7
44
1.41
106746914--106746942
14
2.1
14
100
0
58
48
17
0
34
1.47
106750871--106750911
21
2.0
21
90
0
64
19
29
21
29
1.98
106759028--106759059
11
2.9
11
95
0
55
21
0
34
43
1.53
106763875--106763912
17
2.2
17
86
9
51
52
0
5
42
1.24
106765484--106765544
30
2.0
30
96
0
113
24
13
11
50
1.74
106773628--106773680
18
2.9
18
88
0
79
33
16
22
26
1.96
106783154--106783190
12
3.0
13
84
11
51
29
40
18
10
1.85
106786301--106786334
17
2.0
17
94
0
59
44
50
0
5
1.26
106788475--106788508
17
2.0
17
94
0
59
44
50
0
5
1.26
106793102--106793135
17
2.0
17
94
0
59
44
50
0
5
1.26
106796021--106796054
17
2.0
17
94
0
59
44
50
0
5
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106801227--106801259
16
2.0
17
88
5
50
48
0
0
51
1.00
106801817--106801843
9
3.0
9
100
0
54
44
11
0
44
1.39
106803364--106803409
21
2.2
21
92
0
74
67
19
6
6
1.36
106803364--106803417
21
2.6
21
87
0
63
68
18
7
5
1.33
106809133--106809173
21
2.0
21
90
0
64
29
21
29
19
1.98
106814041--106814081
21
2.0
21
85
0
55
65
19
7
7
1.41
106819309--106819351
20
2.3
18
88
8
59
23
0
2
74
0.93
106822461--106822564
55
1.9
55
84
7
140
51
13
7
26
1.67
106833597--106833628
12
2.7
12
100
0
64
59
0
6
34
1.23
106834921--106834973
23
2.3
23
96
0
97
35
16
13
33
1.88
106837442--106837525
25
3.3
25
80
8
89
35
20
25
19
1.95
106837568--106837724
80
2.0
79
94
1
278
37
21
26
15
1.92
106839383--106839451
32
2.2
32
84
7
88
49
10
4
36
1.57
106839397--106839453
17
3.5
16
72
18
55
49
7
7
36
1.57
106842165--106842194
13
2.3
13
100
0
60
63
0
13
23
1.29
106846783--106846816
16
2.1
17
88
5
52
35
2
0
61
1.11
106847929--106847992
15
3.9
16
73
15
51
50
3
3
43
1.33
106848006--106848061
26
2.1
27
81
12
64
42
1
5
50
1.35
106848068--106848119
26
1.9
28
84
7
72
55
3
3
36
1.36
106863850--106863890
21
2.0
21
90
0
64
29
21
29
19
1.98
106870748--106870782
18
1.9
18
94
0
61
80
5
0
14
0.89
106871025--106871206
9
20.0
9
66
23
71
32
1
2
62
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106871096--106871181
18
4.8
18
76
13
79
34
0
2
62
1.08
106871112--106871192
19
4.4
19
72
20
73
33
0
2
64
1.07
106876936--106876960
6
4.2
6
100
0
50
20
0
0
80
0.72
106884225--106884249
13
1.9
13
100
0
50
68
0
0
32
0.90
106893072--106893103
17
1.9
17
93
6
57
37
0
0
62
0.95
106896684--106896728
23
2.0
23
86
8
65
53
8
8
28
1.62
106912363--106912716
176
2.0
177
96
0
647
33
20
18
28
1.96
106912784--106913437
325
2.0
325
97
0
1236
33
16
17
33
1.92
106924449--106924498
17
2.7
20
78
18
70
10
0
44
46
1.37
106929078--106929127
17
2.7
20
78
18
70
10
0
44
46
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343