genome.fa.s10.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  148  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224807--49224846	20	2.0	20	100	0	80	35	10	10	45	1.71
49228343--49228501	43	3.7	43	75	6	135	27	15	24	33	1.95
49238205--49238256	25	2.1	25	96	0	95	28	21	11	38	1.88
49245374--49245545	93	1.8	93	92	0	290	27	28	21	22	1.99
49245367--49245542	46	3.8	46	74	12	180	28	28	21	21	1.98
49245419--49245561	46	3.1	45	75	15	123	29	27	19	23	1.98
49247924--49248012	30	3.0	30	79	11	94	56	15	17	10	1.67
49247924--49248006	15	5.6	14	73	10	58	55	16	18	9	1.68
49247935--49248012	15	5.2	15	75	9	70	55	15	17	11	1.69
49250927--49251104	46	3.8	46	77	10	209	28	28	21	21	1.99
49250934--49251105	93	1.8	93	93	0	299	27	29	22	21	1.99
49260170--49260254	42	2.0	42	95	0	152	57	4	9	28	1.50
49260300--49260338	18	2.2	18	86	4	53	69	7	17	5	1.32
49267702--49267757	15	3.7	15	88	7	87	12	16	10	60	1.58
49272950--49273009	27	2.3	26	82	2	66	36	20	20	23	1.95
49276460--49276494	17	2.0	18	94	5	63	31	0	0	68	0.90
49282168--49282253	40	2.2	39	85	2	109	29	27	17	25	1.97
49286832--49286872	20	2.0	20	86	9	57	21	7	2	68	1.26
49308077--49308146	24	3.0	24	67	29	60	31	14	32	21	1.93
49307907--49308292	47	8.2	47	90	0	583	34	11	28	26	1.90
49308306--49308488	46	4.0	46	89	0	267	36	8	30	25	1.85
49309977--49310368	39	9.9	40	87	2	497	23	19	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49309977--49310366	79	4.9	79	88	4	509	23	19	29	26	1.98
49309981--49310368	160	2.4	158	86	2	557	23	19	29	27	1.98
49314145--49314281	39	3.5	40	90	6	201	24	28	23	23	2.00
49322284--49322500	40	5.5	40	91	3	334	24	28	23	23	1.99
49334866--49335068	40	5.1	40	88	5	261	27	27	22	22	1.99
49342922--49343089	40	4.2	40	79	3	187	28	26	20	24	1.99
49346722--49346844	47	2.7	46	78	8	135	32	10	29	27	1.90
49349564--49349613	22	2.3	22	86	6	66	70	2	6	22	1.20
49355322--49355368	25	1.9	24	86	4	67	74	2	17	6	1.12
49356604--49356791	79	2.4	80	88	3	272	26	21	26	25	2.00
49356604--49356791	40	4.7	40	89	2	272	26	21	26	25	2.00
49356604--49356814	79	2.7	79	82	5	255	27	21	25	25	2.00
49356604--49356824	119	1.9	119	82	9	281	27	22	25	24	2.00
49371724--49371770	25	1.9	24	86	4	67	74	2	17	6	1.12
49373011--49373154	39	3.7	39	87	0	207	24	22	26	26	2.00
49373008--49373168	39	4.1	40	82	4	166	25	21	26	26	2.00
49379813--49379846	16	2.1	16	94	0	59	67	0	0	32	0.91
49382820--49382864	20	2.3	20	88	3	65	28	17	26	26	1.98
49386466--49386525	27	2.3	26	82	2	66	23	20	20	36	1.95
49387267--49387326	27	2.3	26	82	2	66	23	20	20	36	1.95
49385857--49387459	801	2.0	801	99	0	3172	25	16	24	33	1.96
49394784--49394843	30	2.0	30	100	0	120	26	23	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49402492--49402566	9	7.9	9	77	11	78	34	8	21	36	1.83
49402491--49402568	38	2.1	38	97	0	147	34	10	20	34	1.87
49402490--49402570	20	4.2	20	90	6	139	35	11	19	33	1.87
49402623--49402675	25	2.1	25	92	3	88	35	18	16	28	1.93
49402887--49402950	31	2.1	31	87	0	92	37	15	21	25	1.93
49410461--49410508	25	1.9	25	86	0	69	33	25	14	27	1.94
49410547--49410623	9	7.9	9	72	16	64	35	7	22	35	1.83
49410556--49410627	11	7.1	11	70	17	57	36	11	20	31	1.88
49410545--49410627	20	4.2	20	93	0	148	36	10	20	32	1.87
49410681--49410778	47	2.1	47	94	5	171	30	20	20	28	1.98
49410680--49410799	24	5.0	24	88	10	174	30	20	21	27	1.98
49410995--49411055	31	2.0	31	86	0	86	31	14	26	27	1.95
49412582--49412633	25	2.1	25	96	0	95	38	11	21	28	1.88
49413079--49413118	20	2.1	19	85	4	53	32	7	12	47	1.69
49420410--49420628	48	4.5	48	79	2	206	24	27	20	27	1.99
49420410--49420628	96	2.3	98	86	1	298	24	27	20	27	1.99
49425873--49425981	43	2.6	42	78	11	116	27	17	24	30	1.97
49463966--49464120	82	1.9	80	85	7	215	27	15	27	29	1.96
49463965--49464140	55	3.3	53	78	11	180	27	15	27	29	1.96
49463965--49464140	27	6.6	27	81	8	171	27	15	27	29	1.96
49472127--49472304	27	6.6	27	83	3	205	26	15	28	29	1.96
49472128--49472283	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49472124--49472304	82	2.2	81	83	2	229	27	15	27	29	1.96
49474437--49474500	31	2.1	31	90	0	101	25	23	15	35	1.94
49474693--49474860	24	7.0	24	89	6	243	27	19	20	31	1.97
49474917--49474993	9	7.9	9	72	16	64	35	22	7	35	1.83
49474913--49474995	20	4.2	20	93	0	148	32	20	10	36	1.87
49482480--49482548	34	2.0	34	94	5	122	20	14	26	39	1.91
49486993--49487039	24	2.0	24	91	0	76	36	2	38	23	1.67
49488450--49488537	27	3.3	26	84	7	95	13	26	22	37	1.91
49496356--49496440	42	2.0	42	100	0	170	58	4	9	27	1.49
49498333--49498603	46	5.8	46	75	9	185	28	19	29	23	1.98
49505895--49506065	45	3.7	46	79	7	154	29	20	28	21	1.98
49511734--49511868	55	2.4	56	88	1	209	33	24	16	25	1.96
49526126--49526216	46	2.0	46	86	0	128	27	31	6	34	1.83
49526233--49526354	22	5.3	22	65	30	67	24	27	13	34	1.93
49526230--49526475	47	5.2	47	95	0	438	25	27	12	34	1.91
49528775--49528800	13	2.0	13	100	0	52	61	7	0	30	1.24
49535906--49536127	40	5.6	40	85	7	301	28	24	22	24	1.99
49541548--49541589	18	2.3	19	80	12	52	42	7	9	40	1.65
49542058--49542211	28	5.5	28	93	3	249	25	12	28	33	1.92
49542035--49542211	56	3.2	55	89	3	248	25	11	28	33	1.91
49543001--49543071	35	2.0	35	100	0	142	25	16	25	32	1.96
49545841--49545911	35	2.0	35	100	0	142	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49548154--49548218	31	2.1	31	94	0	112	16	32	10	40	1.84
49550703--49550765	32	2.0	32	100	0	126	55	3	12	28	1.52
49552144--49552226	32	2.6	32	77	7	96	21	34	21	21	1.96
49557098--49557204	43	2.6	41	80	4	124	29	16	27	26	1.97
49561491--49561647	77	2.0	77	98	0	305	26	19	15	38	1.92
49561999--49562070	33	2.1	34	84	2	92	26	25	23	25	2.00
49563831--49563877	20	2.3	21	88	3	69	27	17	36	19	1.93
49565708--49565764	26	2.2	26	81	6	62	24	19	22	33	1.97
49567144--49567253	31	3.5	31	94	0	184	28	24	19	28	1.98
49567277--49567368	42	2.2	42	92	0	148	38	21	14	26	1.91
49567513--49567686	26	6.8	26	89	1	246	28	22	21	27	1.99
49567513--49567686	52	3.4	52	95	2	300	28	22	21	27	1.99
49567735--49567811	20	4.0	20	90	8	115	33	19	9	37	1.83
49567735--49567791	11	5.5	11	72	16	59	31	19	10	38	1.86
49568472--49568536	27	2.4	27	82	5	78	21	24	18	35	1.96
49568568--49569046	27	17.7	27	76	5	342	30	8	19	40	1.82
49568653--49569046	81	4.9	80	86	4	427	29	8	20	41	1.82
49569038--49569141	27	3.9	27	89	0	163	40	8	22	28	1.83
49569012--49569155	54	2.7	54	83	0	189	36	8	21	34	1.84
49569012--49569141	27	4.8	27	87	0	161	37	8	22	31	1.84
49568974--49569168	54	3.6	54	79	0	183	33	7	22	36	1.82
49573880--49573911	15	2.1	15	94	0	55	15	25	15	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49577295--49577344	26	1.9	26	83	0	64	12	12	4	72	1.26
49579606--49579724	40	3.0	40	88	0	175	24	22	25	27	2.00
49579607--49579765	80	2.0	80	82	4	196	23	22	25	28	1.99
49587495--49587652	40	4.0	40	92	1	255	24	21	25	28	1.99
49587495--49587693	80	2.5	78	86	4	265	24	22	25	28	1.99
49589207--49589261	21	2.7	20	83	8	65	14	34	25	25	1.94
49590180--49590212	13	2.5	14	85	14	52	45	6	6	42	1.53
49590201--49590263	33	1.9	33	83	6	83	52	17	0	30	1.45
49592380--49592417	19	2.0	19	85	10	51	28	2	23	44	1.67
49596140--49596252	23	4.8	22	75	13	75	23	23	17	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343