genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  128  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43131015--43131140	46	2.7	46	87	3	182	21	19	26	32	1.97
43134392--43134519	46	2.8	46	87	2	195	21	22	26	28	1.99
43141120--43141214	19	4.8	19	69	12	75	22	17	26	33	1.96
43141098--43141253	60	2.5	62	89	4	244	22	16	26	34	1.95
43141195--43141298	43	2.5	43	79	3	113	27	15	25	30	1.96
43156078--43156246	46	3.7	46	77	13	193	23	20	27	28	1.99
43156071--43156241	93	1.8	93	92	0	288	22	21	27	28	1.99
43162659--43162795	43	3.2	43	77	3	132	32	21	16	29	1.95
43164615--43164768	67	2.3	67	87	6	231	29	22	29	18	1.97
43172837--43172961	55	2.3	55	87	0	169	16	28	28	25	1.97
43176588--43176616	14	2.0	15	93	6	51	62	13	6	17	1.52
43178386--43178445	24	2.4	26	77	5	61	30	3	21	45	1.68
43181798--43181920	43	2.8	44	81	6	144	34	24	16	24	1.95
43186200--43186369	46	3.7	46	79	4	207	30	28	20	20	1.98
43186208--43186379	93	1.8	93	91	0	281	29	29	20	20	1.98
43188765--43188812	15	3.2	15	80	11	62	58	14	14	12	1.64
43190172--43190210	19	2.0	20	90	5	62	38	17	5	38	1.72
43193345--43193528	40	4.6	40	82	6	196	23	20	27	28	1.99
43193345--43193525	80	2.3	81	83	9	221	23	20	27	27	1.99
43193426--43193575	40	3.8	39	81	7	140	25	22	28	24	1.99
43201249--43201432	40	4.6	40	82	6	196	23	20	27	28	1.99
43201249--43201429	80	2.3	81	83	9	221	23	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43201330--43201479	40	3.8	38	80	8	122	24	22	28	24	1.99
43206464--43206703	68	3.7	64	76	11	229	29	17	27	25	1.97
43210938--43211085	67	2.2	66	83	8	174	32	17	28	21	1.96
43210893--43211145	68	3.9	64	77	11	203	30	16	28	24	1.97
43214830--43214854	11	2.3	11	100	0	50	84	0	0	16	0.63
43214830--43214901	14	5.6	13	74	9	51	73	1	2	22	1.04
43235551--43235650	51	2.0	51	95	0	182	37	25	16	22	1.93
43235552--43235633	27	3.1	27	62	22	66	36	28	13	21	1.91
43238920--43238992	34	2.2	34	87	7	105	27	23	24	24	2.00
43243110--43243138	14	2.0	15	93	6	51	51	20	0	27	1.47
43251689--43251752	27	2.4	27	89	0	92	17	20	35	26	1.94
43251814--43251930	27	4.3	26	81	4	90	42	19	5	31	1.75
43251882--43252237	27	13.2	27	83	4	371	32	21	7	38	1.82
43251909--43252237	81	4.1	81	84	4	416	30	21	8	39	1.83
43252744--43252816	31	2.4	31	90	0	110	19	19	13	47	1.82
43252744--43252837	6	15.3	6	70	16	68	19	17	13	50	1.79
43261019--43261054	19	1.9	18	88	5	54	44	16	0	38	1.48
43268240--43268364	40	3.1	41	91	2	175	30	27	18	24	1.98
43274482--43274664	77	2.3	81	85	7	243	25	27	22	24	2.00
43274463--43274664	40	5.1	40	84	8	245	24	27	22	24	2.00
43282471--43282655	40	4.7	40	86	6	225	27	27	21	24	1.99
43284998--43285220	40	5.7	40	85	6	278	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43284998--43285218	79	2.8	79	83	7	272	24	22	28	24	2.00
43285037--43285253	79	2.8	79	80	10	198	27	20	27	24	1.99
43296241--43296510	49	5.6	49	90	2	440	30	9	30	28	1.89
43296244--43296510	96	2.8	96	95	1	462	30	9	31	28	1.89
43297875--43298056	40	4.6	40	81	6	192	25	28	20	25	1.99
43297842--43298056	79	2.7	81	79	7	203	25	27	20	26	1.99
43302431--43302497	32	2.1	32	85	0	89	28	25	10	35	1.89
43302540--43302685	56	2.6	55	77	6	150	26	27	17	28	1.98
43308835--43308925	28	3.2	28	70	11	87	24	24	18	32	1.97
43308795--43308952	56	2.8	56	81	5	160	27	29	15	28	1.96
43316138--43316341	27	7.6	27	85	4	250	29	27	15	26	1.96
43319595--43319702	37	2.9	37	92	0	180	26	32	17	23	1.97
43319843--43319988	48	3.0	48	87	0	211	32	24	6	36	1.80
43323779--43323855	29	2.6	31	80	10	90	27	32	16	23	1.96
43325429--43325538	37	3.0	37	93	0	184	26	31	18	23	1.97
43325679--43325824	48	3.0	48	87	0	220	32	25	6	36	1.81
43332963--43333056	40	2.3	40	85	3	118	30	17	24	27	1.97
43339425--43339551	43	3.0	42	81	5	139	25	14	25	34	1.94
43341138--43341169	8	4.0	8	91	0	55	46	25	25	3	1.67
43341416--43341479	28	2.3	28	91	0	101	35	28	6	29	1.82
43341586--43341675	28	3.2	26	79	7	90	20	23	22	34	1.97
43341596--43341675	27	2.9	27	84	5	106	21	25	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43345966--43345994	14	2.0	15	93	6	51	51	27	0	20	1.47
43349181--43349334	43	3.6	43	76	6	125	28	15	22	33	1.95
43349218--43349334	42	2.7	43	79	9	123	29	15	22	33	1.94
43349534--43349563	14	2.1	14	100	0	60	50	0	13	36	1.42
43351620--43351752	46	2.9	47	84	3	162	20	18	26	34	1.96
43355288--43355357	15	4.7	15	77	8	72	10	11	15	62	1.53
43355291--43355347	30	1.9	30	92	0	96	12	12	14	61	1.57
43361015--43361128	43	2.7	42	80	10	115	35	25	15	23	1.95
43375857--43375916	27	2.3	26	82	2	66	35	18	23	23	1.96
43375917--43376089	67	2.6	67	90	1	267	29	21	28	19	1.98
43377390--43377564	46	3.8	46	76	15	198	29	29	20	21	1.98
43377397--43377568	93	1.8	93	93	2	301	28	29	20	21	1.98
43384957--43385128	93	1.8	93	95	2	310	28	29	20	20	1.98
43384950--43385125	46	3.8	46	79	14	209	29	29	20	20	1.98
43387060--43387112	27	2.0	27	88	0	79	24	18	18	37	1.94
43387094--43387250	27	5.8	27	83	3	108	31	7	20	40	1.81
43387134--43387253	54	2.2	54	88	2	170	30	7	20	41	1.79
43387150--43387253	27	3.9	27	92	0	163	29	7	21	41	1.81
43389480--43389623	49	2.9	49	85	4	200	27	27	20	24	1.99
43389483--43389623	51	2.8	49	84	4	185	28	27	20	23	1.99
43392281--43392331	25	2.0	25	100	0	102	27	33	0	39	1.57
43393361--43393687	167	2.0	167	90	1	512	31	18	8	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43394059--43394186	51	2.5	51	93	0	220	30	22	20	26	1.98
43393959--43394242	50	5.6	50	78	5	250	30	23	17	27	1.97
43394587--43394633	19	2.3	20	82	10	60	48	14	0	36	1.44
43397205--43397236	16	2.0	16	93	0	55	31	18	3	46	1.65
43399896--43399977	43	1.9	43	97	0	155	31	12	14	41	1.83
43404689--43404722	17	1.9	18	88	5	52	35	11	2	50	1.54
43405391--43405473	22	3.8	22	73	0	76	33	24	25	16	1.96
43408703--43408872	39	4.3	39	87	0	196	32	18	24	24	1.97
43408730--43408898	78	2.2	78	83	3	207	31	20	24	23	1.98
43410827--43411259	47	9.1	47	90	2	668	28	30	9	31	1.88
43410829--43411256	143	3.0	143	92	1	680	28	31	9	31	1.88
43410827--43411259	96	4.6	96	94	2	671	28	30	9	31	1.88
43420984--43421153	39	4.3	39	84	2	180	32	20	22	24	1.97
43420986--43421153	78	2.2	78	83	2	203	32	20	22	24	1.98
43424297--43424468	40	4.3	40	83	5	215	23	20	27	27	1.99
43424679--43424720	22	1.9	22	85	9	59	33	9	14	42	1.78
43427696--43427852	39	4.0	39	94	0	260	20	24	29	25	1.99
43430018--43430046	12	2.4	12	100	0	58	6	6	24	62	1.45
43436223--43436260	19	2.0	19	100	0	76	31	15	15	36	1.90
43437664--43437714	20	2.7	18	82	14	59	37	21	0	41	1.54
43438981--43439024	22	2.0	22	95	0	79	20	27	43	9	1.82
43453599--43453655	15	3.8	15	86	4	80	12	14	15	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43456375--43456531	56	2.8	54	81	8	165	21	19	29	29	1.97
43459390--43459553	46	3.5	45	78	8	159	24	30	18	26	1.98
43459382--43459598	47	4.6	46	76	8	136	23	30	18	26	1.98
43462224--43462299	29	2.6	29	81	4	91	31	13	23	31	1.93
43462220--43462307	29	3.1	28	75	14	90	31	13	22	31	1.93
43466761--43466875	29	4.0	29	85	1	142	27	13	27	31	1.93
43476952--43477061	6	17.8	6	68	15	55	47	10	20	21	1.79
43476964--43477033	25	2.8	25	88	0	104	44	10	24	21	1.82
43476927--43477061	31	4.4	31	76	8	114	46	11	19	22	1.81
43477179--43477238	27	2.3	26	82	2	66	36	20	21	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343