genome.fa.s10.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  123  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41226763--41226902	54	2.6	53	77	7	158	28	8	22	40	1.83
41226888--41226945	27	2.2	27	87	6	84	36	8	17	37	1.80
41230013--41230164	67	2.3	65	80	7	166	28	16	31	23	1.96
41232654--41232712	27	2.2	26	88	5	91	37	22	23	16	1.94
41232918--41232983	22	3.0	22	80	8	80	37	21	19	21	1.94
41233496--41233630	27	5.0	27	85	0	162	22	22	21	32	1.98
41233670--41233844	27	6.5	26	80	9	136	29	9	22	38	1.86
41233670--41233844	54	3.2	52	74	7	161	29	9	22	38	1.86
41233837--41233887	27	1.9	27	84	11	70	37	11	17	33	1.86
41234055--41234093	17	2.3	17	90	0	69	10	35	35	17	1.84
41241079--41241304	99	2.4	93	84	10	273	26	30	18	24	1.98
41241079--41241304	46	4.8	49	82	11	258	26	30	18	24	1.98
41241087--41241399	93	3.3	90	79	12	226	26	29	18	25	1.98
41251667--41251814	41	3.6	40	77	7	109	32	26	15	25	1.95
41260829--41260893	28	2.3	28	94	0	112	33	27	7	30	1.85
41261009--41261088	27	2.9	27	83	5	97	21	22	21	35	1.96
41261009--41261099	27	3.2	28	79	4	85	21	24	19	34	1.97
41266766--41266795	14	2.1	14	93	0	51	46	13	0	40	1.43
41268348--41268376	14	2.0	15	93	6	51	51	20	0	27	1.47
41274695--41274870	97	1.8	97	85	4	248	27	19	30	22	1.98
41274556--41274870	49	6.6	47	70	13	198	27	20	29	23	1.98
41276858--41277028	93	1.8	93	83	0	225	29	25	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41282707--41282875	46	3.6	47	76	13	170	31	27	18	23	1.97
41282755--41282898	46	3.1	44	71	15	114	29	27	19	23	1.98
41284616--41284644	14	2.0	15	93	6	51	24	0	20	55	1.44
41289970--41290117	55	2.7	54	77	2	170	36	19	23	20	1.95
41302168--41302296	49	2.6	49	86	4	172	26	20	30	22	1.99
41302164--41302438	142	1.9	142	82	5	342	26	17	31	24	1.97
41311166--41311441	39	7.1	39	91	0	444	22	25	28	24	1.99
41321862--41322037	46	3.8	46	79	12	207	20	20	30	28	1.98
41321859--41322030	93	1.8	93	94	0	308	20	20	30	27	1.98
41324130--41324190	26	2.3	26	83	5	79	32	16	19	31	1.94
41333010--41333397	49	8.1	49	88	4	576	31	9	31	28	1.88
41333010--41333397	96	4.0	96	96	0	641	31	9	31	28	1.88
41335855--41335963	56	1.9	56	85	7	150	28	28	17	25	1.97
41344534--41344698	56	2.9	57	87	2	226	29	13	24	32	1.94
41351946--41352093	43	3.4	43	82	3	156	25	15	26	33	1.95
41355052--41355321	29	9.3	29	81	3	213	36	12	24	26	1.92
41355193--41355408	58	3.7	58	74	5	186	37	13	24	24	1.91
41355104--41355350	116	2.1	116	83	3	300	37	14	24	24	1.92
41355158--41355408	29	8.6	29	79	6	143	37	13	24	23	1.91
41358157--41358307	28	5.4	28	92	1	223	25	11	28	33	1.92
41366322--41366471	28	5.4	28	91	1	212	26	12	27	34	1.92
41366347--41366485	28	5.0	27	91	2	100	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41371361--41371474	28	4.0	29	76	10	110	27	28	14	29	1.95
41371367--41371474	57	1.9	57	83	7	139	25	29	14	29	1.95
41371547--41371592	19	2.5	19	85	3	58	21	36	13	28	1.91
41371690--41371736	8	5.9	8	80	9	51	6	21	23	48	1.72
41375883--41375974	29	3.2	29	72	6	71	23	32	14	29	1.94
41377636--41377706	27	2.8	25	75	8	70	29	22	22	25	1.99
41381866--41381948	38	2.1	38	84	4	103	18	14	39	27	1.89
41388253--41388367	43	2.7	42	80	1	131	29	27	20	22	1.98
41389268--41389318	26	2.0	26	84	0	66	37	11	5	45	1.65
41396746--41396852	42	2.5	42	83	1	142	30	27	18	23	1.98
41398518--41398688	48	3.6	46	81	7	200	25	25	19	28	1.99
41398518--41398704	96	1.9	96	91	0	302	26	26	19	27	1.99
41404857--41405039	48	3.8	48	82	2	217	23	31	19	26	1.98
41406085--41406183	44	2.3	43	83	11	107	24	16	28	31	1.96
41413206--41413379	46	3.8	46	76	15	189	22	20	27	29	1.99
41420642--41420764	46	2.8	45	92	3	196	21	21	27	29	1.99
41423020--41423167	47	3.1	47	83	2	145	32	26	15	25	1.95
41423068--41423167	47	2.1	47	92	0	164	33	22	15	30	1.94
41423144--41423335	54	3.6	54	84	2	228	33	27	14	25	1.94
41423943--41424154	105	2.0	105	98	0	406	42	17	8	31	1.80
41430355--41430428	29	2.6	29	89	4	105	25	16	32	25	1.96
41433047--41433176	45	2.9	45	88	0	197	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41435070--41435095	13	2.0	13	100	0	52	69	7	15	7	1.35
41436770--41436832	29	2.2	29	94	0	108	12	23	44	19	1.85
41437169--41437351	48	3.8	48	87	2	217	27	30	19	22	1.98
41437217--41437352	48	2.8	48	94	0	236	30	30	16	22	1.96
41438642--41438687	20	2.3	20	80	0	56	17	30	34	17	1.93
41446426--41446483	29	2.0	29	96	0	107	44	6	15	32	1.73
41450097--41450252	27	5.8	26	84	3	114	30	19	7	42	1.78
41450097--41450254	54	2.9	53	80	2	156	30	19	6	43	1.77
41450121--41450279	27	5.9	27	84	0	140	32	18	6	42	1.77
41450231--41450563	27	12.3	27	77	4	224	38	19	9	31	1.85
41450245--41450451	80	2.6	81	82	3	231	40	21	9	29	1.84
41450581--41450658	27	2.9	27	77	11	88	35	21	20	21	1.96
41451451--41451557	25	4.4	24	86	3	126	30	20	22	26	1.98
41451451--41451544	25	3.8	25	88	1	127	28	22	22	26	1.99
41454096--41454156	27	2.3	27	82	0	68	31	29	6	32	1.83
41454107--41454262	27	5.8	27	89	1	179	28	23	7	41	1.80
41454111--41454262	80	1.9	81	81	1	189	28	22	7	41	1.80
41454214--41454546	27	12.3	27	75	8	167	39	19	9	31	1.83
41454161--41454291	54	2.4	54	80	0	136	33	20	7	38	1.81
41454241--41454573	54	6.1	54	73	7	226	39	20	9	30	1.84
41455456--41455549	25	3.8	25	90	1	136	25	22	24	27	2.00
41455456--41455562	25	4.4	24	85	5	126	28	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458062--41458122	27	2.3	27	82	0	68	31	29	6	32	1.83
41458073--41458230	53	2.9	54	80	2	167	28	22	6	42	1.79
41458080--41458257	27	6.6	27	84	1	160	30	20	7	41	1.79
41458221--41458539	27	11.8	27	78	4	223	40	19	9	30	1.83
41458221--41458371	80	1.9	80	86	2	214	41	20	8	29	1.82
41458565--41458629	27	2.4	27	84	5	87	35	15	24	24	1.94
41459418--41459523	24	4.4	24	85	2	133	27	19	24	28	1.99
41461663--41461739	27	2.9	27	80	7	68	29	28	7	33	1.85
41461690--41461833	27	5.4	27	81	1	146	24	21	9	44	1.82
41461910--41461953	22	2.0	22	86	0	61	36	6	18	38	1.77
41461838--41462010	27	6.6	27	74	10	101	41	17	10	30	1.83
41461838--41462101	27	9.9	27	72	10	96	40	17	10	32	1.83
41462155--41462219	27	2.4	27	79	5	69	35	16	24	23	1.95
41463027--41463118	24	3.8	24	82	4	105	25	21	25	28	1.99
41465282--41465342	27	2.3	27	85	0	77	31	29	6	32	1.83
41465293--41465436	27	5.4	27	82	1	137	24	22	9	43	1.83
41465439--41465511	27	2.7	27	87	4	94	49	19	5	26	1.69
41465690--41465815	64	2.0	63	90	7	202	42	15	19	22	1.89
41465778--41465843	26	2.5	26	80	7	71	37	18	21	22	1.94
41466543--41466618	24	3.1	24	88	5	109	25	21	22	31	1.98
41467478--41467542	32	2.0	32	100	0	130	44	18	9	27	1.80
41468809--41468860	27	1.9	28	88	7	81	28	25	5	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41468856--41468949	27	3.5	27	83	4	118	24	17	11	46	1.81
41468856--41468960	54	1.9	54	82	3	131	28	16	10	44	1.80
41468981--41469037	26	2.2	25	90	3	87	45	17	8	28	1.78
41469005--41469067	22	2.7	22	80	7	63	41	11	14	33	1.81
41469158--41469213	27	2.1	26	84	15	71	39	10	10	39	1.75
41469267--41469331	27	2.4	27	82	5	78	35	18	24	21	1.96
41470136--41470204	25	2.8	24	78	10	68	21	21	26	30	1.99
41470160--41470217	24	2.5	22	78	15	62	25	18	27	27	1.98
41470425--41470503	31	2.5	31	93	0	140	29	17	25	27	1.98
41470779--41470895	55	2.1	54	96	1	216	21	5	18	54	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343