genome.fa.s10.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  130  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43810787--43810934	76	1.9	76	90	0	233	26	18	25	29	1.98
43812750--43812829	15	5.3	15	84	1	88	13	13	17	55	1.70
43821738--43821788	24	2.1	24	82	7	59	52	17	17	11	1.73
43822011--43822110	29	3.6	29	79	6	107	25	15	30	30	1.95
43829325--43829385	29	2.2	29	85	5	81	29	16	26	27	1.97
43829339--43829436	29	3.4	29	78	1	108	23	16	31	28	1.96
43842521--43842585	29	2.2	29	88	0	94	30	29	9	30	1.88
43844073--43844127	28	1.9	29	81	3	67	32	20	1	45	1.61
43856643--43856693	26	2.0	26	84	7	68	47	13	1	37	1.55
43861088--43861113	11	2.4	11	100	0	52	34	7	19	38	1.80
43881747--43881958	40	5.3	40	81	3	223	26	28	13	32	1.93
43883456--43883493	20	1.9	20	84	10	51	23	0	0	76	0.79
43889185--43889214	14	2.1	14	100	0	60	6	36	26	30	1.82
43892263--43892328	32	2.1	32	100	0	132	31	12	25	30	1.92
43894986--43895209	78	2.8	79	81	11	253	25	21	27	25	2.00
43894986--43895209	40	5.7	40	85	6	253	25	21	27	25	2.00
43899968--43899996	14	2.1	14	100	0	58	27	13	20	37	1.91
43902915--43903139	79	2.8	80	80	11	239	26	22	26	24	2.00
43902915--43903139	40	5.7	40	84	7	239	26	22	26	24	2.00
43902915--43903145	119	1.9	120	80	9	267	26	22	26	24	2.00
43902968--43903172	79	2.6	79	81	9	197	27	20	26	24	1.99
43907669--43907721	13	3.6	14	82	12	54	69	7	16	5	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43909696--43909825	66	1.9	68	84	10	176	33	15	30	20	1.94
43916917--43917106	96	2.0	96	89	2	292	33	18	11	35	1.87
43917567--43917600	17	2.0	17	100	0	68	29	11	5	52	1.61
43919833--43919896	26	2.4	27	89	2	94	35	23	10	29	1.89
43920000--43920110	27	4.1	26	88	4	150	19	24	20	35	1.96
43924842--43924879	17	2.2	18	85	4	51	63	2	23	10	1.39
43924861--43924915	12	4.6	12	73	15	51	63	0	23	12	1.29
43930688--43930725	16	2.2	18	86	9	53	50	0	2	47	1.15
43933885--43934005	63	1.9	63	83	5	154	30	20	9	39	1.84
43934064--43934167	19	5.6	19	73	16	69	58	0	1	39	1.09
43934102--43934167	29	2.3	29	80	14	75	56	0	1	42	1.08
43934115--43934167	10	5.7	10	73	13	51	58	0	0	41	0.98
43934491--43934540	19	2.7	20	81	12	61	24	8	2	66	1.29
43944731--43944768	16	2.4	16	100	0	76	23	0	10	65	1.23
43946383--43946531	46	3.2	45	70	23	123	30	26	19	23	1.98
43946938--43946997	30	2.0	30	90	0	93	30	25	8	36	1.85
43951580--43951735	27	5.7	27	78	6	145	27	28	16	28	1.97
43951585--43951736	54	2.8	55	80	4	182	26	27	16	28	1.97
43959637--43959792	27	5.7	27	78	6	145	27	28	16	28	1.97
43959642--43959793	54	2.8	55	80	4	182	26	27	16	28	1.97
43963068--43963378	46	6.6	49	77	13	241	24	29	18	27	1.98
43963068--43963285	95	2.3	95	83	12	276	25	30	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43964055--43964132	41	1.9	41	94	0	138	48	16	15	19	1.81
43970486--43970608	48	2.7	46	86	8	162	26	31	17	23	1.97
43970390--43970748	46	7.6	46	74	11	196	25	30	17	26	1.98
43970580--43970753	94	1.9	92	82	9	219	24	28	18	28	1.98
43975170--43975465	40	7.4	40	90	5	408	26	27	22	23	2.00
43975196--43975465	119	2.3	120	91	3	429	26	28	22	22	1.99
43983263--43983516	40	6.4	40	89	5	349	25	27	22	24	1.99
43983289--43983516	118	1.9	120	89	5	356	26	28	21	23	1.99
43983296--43983516	78	2.8	80	91	3	349	26	28	22	23	1.99
43989270--43989495	49	4.6	49	80	5	247	30	27	16	25	1.97
43993865--43993981	56	2.1	56	96	0	216	45	7	23	23	1.78
43995442--43995944	47	10.6	47	91	2	708	33	8	29	28	1.87
43995442--43995944	143	3.5	143	87	4	741	33	8	29	28	1.87
43995795--43995916	22	5.3	22	63	21	61	33	10	29	26	1.90
43998647--43998877	49	4.7	49	82	4	293	29	27	18	24	1.98
43998647--43998876	100	2.3	98	84	4	300	29	27	18	24	1.98
44004852--44005013	43	3.8	44	83	4	206	27	14	25	31	1.95
44004852--44005008	86	1.8	85	87	4	235	28	15	26	30	1.96
44008458--44008814	184	1.9	184	98	0	696	24	12	29	34	1.91
44009124--44009151	13	2.2	13	100	0	56	21	0	0	78	0.75
44009129--44009158	15	1.9	16	93	6	53	20	0	0	80	0.72
44009215--44009251	16	2.3	16	90	9	58	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44011240--44011496	40	6.5	40	89	3	369	26	22	27	23	2.00
44018425--44018450	13	2.0	13	100	0	52	15	23	7	53	1.67
44021119--44021205	34	2.6	34	83	0	102	32	8	17	42	1.78
44023382--44023507	56	2.2	56	87	5	166	34	11	25	27	1.91
44023373--44023493	28	4.3	28	92	0	179	33	12	26	28	1.92
44026338--44026463	46	2.7	46	92	0	207	32	26	19	21	1.97
44026884--44026943	30	2.0	30	90	0	93	30	25	8	36	1.85
44032914--44033006	28	3.3	28	93	0	150	33	10	25	30	1.90
44032914--44033020	28	3.8	28	89	0	142	33	11	24	30	1.90
44033193--44033340	40	3.6	41	72	5	129	28	19	27	24	1.99
44036386--44036538	38	4.0	38	85	1	180	31	25	22	20	1.98
44037934--44038036	45	2.3	45	96	1	188	33	17	11	37	1.86
44040252--44040317	33	2.0	33	96	0	123	34	34	3	27	1.72
44042116--44042163	25	1.9	25	91	0	78	35	25	14	25	1.94
44042200--44042262	11	6.1	11	75	14	62	36	9	20	33	1.85
44042202--44042273	20	3.6	20	90	0	117	36	9	20	33	1.86
44042326--44042400	24	3.2	24	87	11	118	32	17	21	29	1.96
44042326--44042431	24	4.4	25	87	7	103	32	19	20	27	1.97
44042326--44042425	23	4.2	24	85	8	132	32	20	20	28	1.97
44042385--44042441	25	2.3	25	84	6	71	31	28	19	21	1.97
44042638--44042701	31	2.1	31	90	0	101	35	15	23	25	1.94
44046687--44046837	28	5.4	28	92	1	223	25	11	28	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44054908--44055056	28	5.4	28	89	4	205	26	12	28	33	1.92
44061856--44061903	25	1.9	25	86	0	69	33	25	16	25	1.96
44061940--44061982	20	2.2	20	100	0	86	37	11	18	32	1.87
44061947--44061990	20	2.2	20	91	0	70	34	11	22	31	1.90
44062035--44062178	24	6.0	24	87	8	204	30	20	20	27	1.98
44062371--44062434	31	2.1	31	90	0	101	35	15	23	25	1.94
44066820--44066972	38	4.0	38	84	1	171	33	26	18	21	1.97
44075373--44075473	24	4.2	24	94	0	175	34	2	36	25	1.72
44075381--44075484	24	4.3	24	91	2	95	37	2	33	25	1.71
44077094--44077192	27	3.7	26	82	4	117	16	25	22	36	1.94
44082969--44083045	24	3.2	24	87	3	102	35	3	38	22	1.72
44085184--44085368	79	2.3	81	84	7	236	24	22	27	25	2.00
44085185--44085368	40	4.6	40	83	9	216	24	22	27	25	2.00
44085237--44085401	79	2.1	79	84	6	210	26	21	27	25	1.99
44093059--44093236	38	4.7	38	78	10	175	24	22	26	25	2.00
44100833--44101015	39	4.7	40	80	9	191	25	22	26	25	2.00
44104069--44104251	40	4.7	40	82	9	189	24	27	22	25	2.00
44106321--44106431	27	4.1	27	86	5	145	15	24	22	37	1.93
44106321--44106431	54	2.1	53	88	5	161	15	24	22	37	1.93
44114541--44114691	28	5.4	28	92	1	223	33	28	11	25	1.92
44117013--44117075	20	3.1	20	90	2	99	36	11	20	31	1.88
44117125--44117280	26	6.1	26	87	1	219	27	21	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44119606--44119706	41	2.5	41	86	0	148	29	26	19	23	1.98
44123749--44123827	27	2.8	28	79	9	90	22	24	20	32	1.97
44130673--44130732	27	2.3	26	82	2	66	21	25	20	33	1.97
44141779--44141809	15	2.1	15	100	0	62	25	32	19	22	1.97
44143434--44143605	93	1.8	93	96	0	317	27	29	21	20	1.98
44143427--44143602	46	3.8	46	79	12	216	28	29	21	20	1.98
44150974--44151106	47	2.8	49	79	16	172	29	29	20	21	1.98
44155728--44155788	30	2.0	30	87	0	86	40	4	24	29	1.76
44156498--44156705	67	3.2	64	77	8	195	31	16	28	23	1.96
44165474--44165584	27	4.1	27	82	5	127	36	20	24	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343